Wall clock time and date at job start Mon Mar 30 2020 23:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 6 6 S 1.81396 * 109.47360 * 300.00310 * 4 2 1 7 7 C 1.81405 * 102.99941 * 295.00158 * 6 4 2 8 8 C 1.50701 * 109.47197 * 180.02562 * 7 6 4 9 9 H 1.07998 * 119.99671 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00040 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99883 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99968 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47434 * 89.99477 * 12 10 8 14 14 H 1.48502 * 109.47053 * 209.99945 * 12 10 8 15 15 H 1.48505 * 109.46921 * 329.99709 * 12 10 8 16 16 C 1.50699 * 109.47078 * 60.00337 * 4 2 1 17 17 O 1.21257 * 120.00209 * 264.99886 * 16 4 2 18 18 C 1.47169 * 119.99931 * 84.99669 * 16 4 2 19 19 C 1.39849 * 120.17308 * 359.73051 * 18 16 4 20 20 C 1.37887 * 119.82593 * 179.74334 * 19 18 16 21 21 C 1.38411 * 120.16914 * 0.52370 * 20 19 18 22 22 C 1.38402 * 120.34699 * 359.73019 * 21 20 19 23 23 C 1.37883 * 120.17793 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.09004 * 109.46880 * 299.99984 * 7 6 4 32 32 H 1.08994 * 109.47264 * 59.99684 * 7 6 4 33 33 H 0.96997 * 119.99792 * 180.02562 * 11 10 8 34 34 H 1.08003 * 120.08497 * 359.97438 * 19 18 16 35 35 H 1.07998 * 119.91692 * 180.27286 * 20 19 18 36 36 H 1.07998 * 119.82249 * 179.69915 * 21 20 19 37 37 H 1.08007 * 119.90926 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.09247 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 3.1301 -0.7217 -1.2490 6 16 1.4354 -2.4315 -1.2493 7 6 2.2551 -3.1542 0.1987 8 6 1.8483 -4.5986 0.3374 9 1 1.1646 -5.0377 -0.3740 10 6 2.3488 -5.3594 1.3726 11 7 3.1817 -4.8247 2.2386 12 14 1.8451 -7.1500 1.5442 13 1 2.7931 -8.0057 0.7864 14 1 1.8679 -7.5354 2.9781 15 1 0.4737 -7.3323 1.0044 16 6 1.5378 -0.0109 -2.4797 17 8 0.5247 -0.3900 -3.0276 18 6 2.2769 1.1431 -3.0163 19 6 3.4426 1.5870 -2.3839 20 6 4.1323 2.6656 -2.8959 21 6 3.6678 3.3154 -4.0263 22 6 2.5120 2.8854 -4.6547 23 6 1.8138 1.8052 -4.1579 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.3361 -3.0920 0.0729 32 1 1.9614 -2.6060 1.0938 33 1 3.5342 -5.3601 2.9667 34 1 3.8037 1.0839 -1.4991 35 1 5.0352 3.0069 -2.4113 36 1 4.2098 4.1626 -4.4197 37 1 2.1557 3.3979 -5.5361 38 1 0.9118 1.4711 -4.6491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413014928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:42 Heat of formation + Delta-G solvation = -38.565886 kcal Electronic energy + Delta-G solvation = -19187.818117 eV Core-core repulsion = 16313.561641 eV Total energy + Delta-G solvation = -2874.256475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43400 -39.16932 -37.11320 -35.29393 -32.43214 -31.91387 -30.66865 -29.45498 -28.08932 -25.47972 -24.75052 -23.47364 -22.04887 -20.24691 -18.75689 -18.44639 -17.58411 -16.89539 -16.75313 -16.39870 -16.14644 -15.48385 -15.32585 -14.80923 -14.67688 -14.53149 -14.39181 -14.20129 -14.00624 -13.71180 -13.53960 -12.90968 -12.77049 -12.65098 -12.58497 -12.33273 -12.19598 -12.07414 -11.81199 -11.69006 -11.59412 -10.75818 -10.71337 -10.57355 -9.94165 -9.86172 -8.46616 -8.34490 -6.46879 -0.36393 0.43939 0.77480 1.38580 1.39663 1.42058 1.52427 1.96316 2.35858 2.84493 2.85829 3.00161 3.60766 3.70419 3.92350 4.02554 4.05693 4.15159 4.27381 4.32974 4.48485 4.52572 4.57448 4.71699 4.85664 4.89673 4.92811 4.94353 4.96603 5.07806 5.13662 5.29344 5.37376 5.40036 5.46906 5.51461 5.56054 5.88689 5.96543 6.39284 6.59308 7.20686 8.77429 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030319 B = 0.004130 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.293641 B = 6777.605596 C = 6871.873802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.102 4.102 5 H 0.113 0.887 6 S -0.286 6.286 7 C 0.095 3.905 8 C -0.539 4.539 9 H 0.056 0.944 10 C 0.020 3.980 11 N -0.921 5.921 12 Si 0.973 3.027 13 H -0.269 1.269 14 H -0.272 1.272 15 H -0.269 1.269 16 C 0.424 3.576 17 O -0.468 6.468 18 C -0.179 4.179 19 C -0.077 4.077 20 C -0.133 4.133 21 C -0.080 4.080 22 C -0.134 4.134 23 C -0.077 4.077 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.015 0.985 32 H 0.022 0.978 33 H 0.271 0.729 34 H 0.141 0.859 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 19.814 -8.594 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C -0.206 4.206 4 C -0.231 4.231 5 H 0.131 0.869 6 S -0.055 6.055 7 C -0.052 4.052 8 C -0.577 4.577 9 H 0.074 0.926 10 C -0.181 4.181 11 N -0.559 5.559 12 Si 0.796 3.204 13 H -0.194 1.194 14 H -0.197 1.197 15 H -0.194 1.194 16 C 0.301 3.699 17 O -0.344 6.344 18 C -0.182 4.182 19 C -0.095 4.095 20 C -0.151 4.151 21 C -0.097 4.097 22 C -0.152 4.152 23 C -0.096 4.096 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.159 0.841 35 H 0.175 0.825 36 H 0.178 0.822 37 H 0.170 0.830 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.926 19.052 -9.449 21.354 hybrid contribution 0.554 -0.831 1.203 1.563 sum 2.480 18.222 -8.245 20.153 Atomic orbital electron populations 1.21895 0.94462 1.02358 1.01728 1.21194 0.97049 0.97532 0.94247 1.22277 1.02093 0.93037 1.03186 1.23909 1.04619 0.95220 0.99344 0.86870 1.86958 1.66870 1.08442 1.43277 1.20762 0.95796 0.97868 0.90795 1.20948 1.29023 0.95015 1.12759 0.92554 1.25822 0.94385 1.03494 0.94434 1.70036 1.31666 1.38638 1.15601 0.85331 0.78948 0.78269 0.77842 1.19384 1.19724 1.19370 1.22074 0.83200 0.82243 0.82340 1.90502 1.23858 1.63132 1.56944 1.20248 0.99365 0.98747 0.99803 1.21913 0.92537 0.96425 0.98583 1.21527 1.00917 0.95519 0.97091 1.21874 0.94847 0.98977 0.94029 1.21444 0.96019 0.96404 1.01329 1.21511 0.99343 0.94908 0.93825 0.93416 0.93160 0.90740 0.91160 0.90246 0.91874 0.90653 0.96629 0.95933 0.91998 0.84098 0.82450 0.82157 0.82953 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 8.65 71.98 0.62 -4.24 16 2 C -0.08 -2.52 2.65 -10.79 -0.03 -2.55 16 3 C -0.15 -3.31 7.48 71.98 0.54 -2.77 16 4 C -0.10 -3.61 2.09 29.85 0.06 -3.55 16 5 H 0.11 3.69 6.76 -2.39 -0.02 3.68 16 6 S -0.29 -13.48 18.90 -56.49 -1.07 -14.55 16 7 C 0.10 5.14 5.39 71.24 0.38 5.52 16 8 C -0.54 -31.56 9.13 25.60 0.23 -31.32 16 9 H 0.06 3.35 7.71 -2.91 -0.02 3.32 16 10 C 0.02 1.13 5.46 84.65 0.46 1.59 16 11 N -0.92 -53.91 13.29 21.45 0.28 -53.63 16 12 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 16 C 0.42 14.30 4.77 28.03 0.13 14.44 16 17 O -0.47 -18.83 15.51 -2.96 -0.05 -18.88 16 18 C -0.18 -4.63 4.76 -20.15 -0.10 -4.73 16 19 C -0.08 -1.53 7.09 22.58 0.16 -1.37 16 20 C -0.13 -1.87 10.03 22.23 0.22 -1.64 16 21 C -0.08 -0.98 10.04 22.35 0.22 -0.75 16 22 C -0.13 -2.08 10.03 22.22 0.22 -1.86 16 23 C -0.08 -1.76 9.60 22.58 0.22 -1.55 16 24 H 0.05 1.57 6.82 -2.39 -0.02 1.55 16 25 H 0.05 1.98 6.92 -2.39 -0.02 1.96 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 2.49 6.92 -2.39 -0.02 2.47 16 28 H 0.08 1.48 6.09 -2.39 -0.01 1.47 16 29 H 0.06 1.40 5.48 -2.39 -0.01 1.39 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.02 1.25 7.14 -2.39 -0.02 1.24 16 33 H 0.27 14.76 8.31 -92.71 -0.77 13.98 16 34 H 0.14 2.66 4.34 -2.91 -0.01 2.64 16 35 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 37 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.12 2.95 7.65 -2.91 -0.02 2.93 16 Total: -1.00 -70.06 318.45 5.61 -64.45 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.05 Total: 10.98 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 3.36 Total: -34.78 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.28 Total: -53.63 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.88 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -13.48 SS G_CDS: -1.07 Total: -14.55 kcal Total: -70.06 5.61 -64.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.887 kcal (2) G-P(sol) polarization free energy of solvation -70.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds