Wall clock time and date at job start Tue Mar 31 2020 01:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21252 * 120.00271 * 2 1 4 4 C 1.47163 * 120.00050 * 179.97438 * 2 1 3 5 5 C 1.39878 * 120.17212 * 0.02562 * 4 2 1 6 6 C 1.37864 * 119.82558 * 179.97438 * 5 4 2 7 7 C 1.38430 * 120.17128 * 0.27823 * 6 5 4 8 8 C 1.38377 * 120.34822 * 359.44567 * 7 6 5 9 9 C 1.50704 * 119.91395 * 180.30045 * 8 7 6 10 10 S 1.81397 * 109.47131 * 270.25030 * 9 8 7 11 11 C 1.81397 * 102.99883 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47182 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47202 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46958 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00652 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00196 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99725 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00419 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47551 * 59.99445 * 18 16 14 20 20 H 1.48496 * 109.47268 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.46660 * 299.99468 * 18 16 14 22 22 C 1.37915 * 120.17373 * 0.55224 * 8 7 6 23 23 H 1.08991 * 109.47078 * 270.00631 * 1 2 3 24 24 H 1.09004 * 109.46403 * 30.00312 * 1 2 3 25 25 H 1.08999 * 109.46598 * 149.99629 * 1 2 3 26 26 H 1.07999 * 120.08688 * 359.97438 * 5 4 2 27 27 H 1.08002 * 119.90999 * 179.97438 * 6 5 4 28 28 H 1.07996 * 119.82062 * 179.69897 * 7 6 5 29 29 H 1.09000 * 109.46715 * 30.25487 * 9 8 7 30 30 H 1.09003 * 109.46828 * 150.25024 * 9 8 7 31 31 H 1.08999 * 109.47529 * 300.00020 * 11 10 9 32 32 H 1.09005 * 109.47181 * 60.00107 * 11 10 9 33 33 H 1.08999 * 109.47009 * 300.00466 * 12 11 10 34 34 H 1.09005 * 109.46871 * 60.00045 * 12 11 10 35 35 H 1.08993 * 109.47097 * 300.00307 * 13 12 11 36 36 H 1.08997 * 109.47116 * 59.99923 * 13 12 11 37 37 H 0.96998 * 120.00071 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.08533 * 179.74995 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 1.5471 -2.4879 0.0006 6 6 2.2437 -3.6777 0.0006 7 6 3.6280 -3.6734 0.0064 8 6 4.3235 -2.4772 0.0007 9 6 5.8305 -2.4840 0.0002 10 16 6.4357 -2.4864 1.7103 11 6 8.2380 -2.4954 1.5053 12 6 8.9078 -2.4976 2.8809 13 6 10.4279 -2.5046 2.7080 14 6 11.0876 -2.5074 4.0629 15 1 10.4831 -2.5049 4.9580 16 6 12.4629 -2.5131 4.1602 17 7 13.1991 -2.5166 3.0704 18 14 13.2806 -2.5172 5.8396 19 1 12.8628 -3.7283 6.5907 20 1 14.7560 -2.5239 5.6718 21 1 12.8729 -1.3032 6.5916 22 6 3.6412 -1.2786 0.0006 23 1 -0.3633 0.0001 1.0276 24 1 -0.3632 0.8900 -0.5139 25 1 -0.3632 -0.8900 -0.5139 26 1 0.4671 -2.4928 0.0006 27 1 1.7079 -4.6154 0.0010 28 1 4.1679 -4.6088 0.0113 29 1 6.1896 -3.3758 -0.5136 30 1 6.1977 -1.5958 -0.5139 31 1 8.5366 -3.3871 0.9540 32 1 8.5454 -1.6071 0.9533 33 1 8.6091 -1.6057 3.4318 34 1 8.6004 -3.3857 3.4332 35 1 10.7268 -3.3962 2.1570 36 1 10.7349 -1.6163 2.1559 37 1 14.1666 -2.5210 3.1387 38 1 4.1855 -0.3458 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419502982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:50 Heat of formation + Delta-G solvation = -39.882308 kcal Electronic energy + Delta-G solvation = -17550.157199 eV Core-core repulsion = 14675.843640 eV Total energy + Delta-G solvation = -2874.313559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.31459 -38.56947 -34.45835 -33.51931 -32.02539 -31.67699 -30.12386 -27.67259 -27.01927 -24.06486 -23.40616 -22.14629 -20.33764 -19.65352 -17.42300 -16.44818 -16.12741 -15.95062 -15.74671 -15.29916 -14.88242 -14.59069 -14.52882 -14.34727 -13.96386 -13.57927 -12.95554 -12.77209 -12.62672 -12.47366 -12.37115 -12.05750 -11.75686 -11.67212 -11.35383 -10.91933 -10.85600 -10.57443 -10.06657 -9.92917 -9.79425 -9.32619 -9.27777 -9.15464 -8.92034 -8.36700 -7.46725 -6.01861 -4.04448 0.34152 0.88715 1.86340 2.25010 2.83984 3.33765 3.37659 3.40787 3.54810 3.69244 4.31834 4.45363 4.50322 4.62290 4.71930 4.86157 4.91688 5.00285 5.05426 5.24543 5.33958 5.35806 5.49513 5.50296 5.61657 5.62499 5.67120 5.96998 6.04590 6.11820 6.22187 6.54309 6.54675 6.71034 7.01217 7.20986 7.62665 7.74978 7.96914 8.38796 9.01725 9.59701 11.09463 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034359 B = 0.002524 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.721681 B =11093.034162 C =11441.322609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.394 3.606 3 O -0.456 6.456 4 C -0.175 4.175 5 C -0.074 4.074 6 C -0.133 4.133 7 C -0.069 4.069 8 C -0.077 4.077 9 C -0.053 4.053 10 S -0.268 6.268 11 C -0.075 4.075 12 C -0.095 4.095 13 C 0.028 3.972 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.043 4.043 23 H 0.098 0.902 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.261 0.739 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.196 -1.404 -9.972 28.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.272 3.728 3 O -0.332 6.332 4 C -0.176 4.176 5 C -0.093 4.093 6 C -0.151 4.151 7 C -0.089 4.089 8 C -0.078 4.078 9 C -0.201 4.201 10 S -0.038 6.038 11 C -0.223 4.223 12 C -0.134 4.134 13 C -0.011 4.011 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.063 4.063 23 H 0.116 0.884 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -26.246 -0.842 -9.099 27.791 hybrid contribution 1.275 -0.174 -0.242 1.309 sum -24.971 -1.016 -9.341 26.680 Atomic orbital electron populations 1.22234 0.93725 1.04864 1.04857 1.22512 0.91675 0.87607 0.70978 1.90562 1.72118 1.34315 1.36200 1.20483 0.94343 0.94910 1.07842 1.21469 1.00041 0.91497 0.96278 1.21117 0.94080 0.98261 1.01603 1.21361 0.94382 0.97850 0.95318 1.19285 0.93768 0.93386 1.01359 1.22271 0.93995 1.05862 0.97945 1.87125 1.08785 1.98076 1.09780 1.23664 0.89995 1.04414 1.04193 1.21468 0.98646 1.01597 0.91659 1.19096 0.87228 0.97386 0.97388 1.21184 0.91394 1.50815 0.92569 0.92596 1.25024 0.97522 0.95237 0.96666 1.69951 1.05336 1.50722 1.27533 0.86623 0.78156 0.78694 0.84341 1.20190 1.21274 1.20173 1.21336 0.93086 0.98320 0.93539 0.88367 0.89393 0.89528 0.84949 0.85120 0.85136 0.89087 0.89152 0.90485 0.90472 0.92370 0.92391 0.96443 0.96422 0.92902 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.07 9.75 36.01 0.35 -0.72 16 2 C 0.39 3.84 7.23 -30.68 -0.22 3.62 16 3 O -0.46 -6.22 17.09 5.58 0.10 -6.13 16 4 C -0.17 -1.71 5.87 -105.06 -0.62 -2.33 16 5 C -0.07 -0.54 9.36 -39.10 -0.37 -0.91 16 6 C -0.13 -0.99 10.03 -39.65 -0.40 -1.39 16 7 C -0.07 -0.64 9.69 -39.46 -0.38 -1.02 16 8 C -0.08 -0.85 5.13 -104.69 -0.54 -1.39 16 9 C -0.05 -0.63 6.06 36.01 0.22 -0.41 16 10 S -0.27 -4.17 21.72 -107.50 -2.33 -6.50 16 11 C -0.07 -1.29 5.94 37.16 0.22 -1.07 16 12 C -0.09 -1.99 5.16 -26.73 -0.14 -2.13 16 13 C 0.03 0.72 4.97 -27.89 -0.14 0.58 16 14 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 18 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 C -0.04 -0.49 9.25 -39.10 -0.36 -0.85 16 23 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.27 6.47 -51.93 -0.34 -0.07 16 26 H 0.13 0.54 6.36 -52.49 -0.33 0.21 16 27 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 28 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.09 0.95 8.09 -51.92 -0.42 0.53 16 30 H 0.09 1.02 8.08 -51.92 -0.42 0.60 16 31 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 32 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.14 1.67 7.65 -52.49 -0.40 1.26 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -32.67 339.93 -9.86 -42.54 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -5.68 Total: -3.89 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -2.78 Total: -21.69 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: 0.10 Total: -6.13 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -4.17 SS G_CDS: -2.33 Total: -6.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.67 -9.86 -42.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419502982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.654 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds