Wall clock time and date at job start Tue Mar 31 2020 01:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21252 * 120.00271 * 2 1 4 4 C 1.47163 * 120.00050 * 179.97438 * 2 1 3 5 5 C 1.39878 * 120.17212 * 0.02562 * 4 2 1 6 6 C 1.37864 * 119.82558 * 179.97438 * 5 4 2 7 7 C 1.38430 * 120.17128 * 0.27823 * 6 5 4 8 8 C 1.38377 * 120.34822 * 359.44567 * 7 6 5 9 9 C 1.50704 * 119.91395 * 180.30045 * 8 7 6 10 10 S 1.81397 * 109.47131 * 270.25030 * 9 8 7 11 11 C 1.81397 * 102.99883 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47182 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47202 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46958 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00652 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00196 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99725 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00419 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47551 * 59.99445 * 18 16 14 20 20 H 1.48496 * 109.47268 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.46660 * 299.99468 * 18 16 14 22 22 C 1.37915 * 120.17373 * 0.55224 * 8 7 6 23 23 H 1.08991 * 109.47078 * 270.00631 * 1 2 3 24 24 H 1.09004 * 109.46403 * 30.00312 * 1 2 3 25 25 H 1.08999 * 109.46598 * 149.99629 * 1 2 3 26 26 H 1.07999 * 120.08688 * 359.97438 * 5 4 2 27 27 H 1.08002 * 119.90999 * 179.97438 * 6 5 4 28 28 H 1.07996 * 119.82062 * 179.69897 * 7 6 5 29 29 H 1.09000 * 109.46715 * 30.25487 * 9 8 7 30 30 H 1.09003 * 109.46828 * 150.25024 * 9 8 7 31 31 H 1.08999 * 109.47529 * 300.00020 * 11 10 9 32 32 H 1.09005 * 109.47181 * 60.00107 * 11 10 9 33 33 H 1.08999 * 109.47009 * 300.00466 * 12 11 10 34 34 H 1.09005 * 109.46871 * 60.00045 * 12 11 10 35 35 H 1.08993 * 109.47097 * 300.00307 * 13 12 11 36 36 H 1.08997 * 109.47116 * 59.99923 * 13 12 11 37 37 H 0.96998 * 120.00071 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.08533 * 179.74995 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 1.5471 -2.4879 0.0006 6 6 2.2437 -3.6777 0.0006 7 6 3.6280 -3.6734 0.0064 8 6 4.3235 -2.4772 0.0007 9 6 5.8305 -2.4840 0.0002 10 16 6.4357 -2.4864 1.7103 11 6 8.2380 -2.4954 1.5053 12 6 8.9078 -2.4976 2.8809 13 6 10.4279 -2.5046 2.7080 14 6 11.0876 -2.5074 4.0629 15 1 10.4831 -2.5049 4.9580 16 6 12.4629 -2.5131 4.1602 17 7 13.1991 -2.5166 3.0704 18 14 13.2806 -2.5172 5.8396 19 1 12.8628 -3.7283 6.5907 20 1 14.7560 -2.5239 5.6718 21 1 12.8729 -1.3032 6.5916 22 6 3.6412 -1.2786 0.0006 23 1 -0.3633 0.0001 1.0276 24 1 -0.3632 0.8900 -0.5139 25 1 -0.3632 -0.8900 -0.5139 26 1 0.4671 -2.4928 0.0006 27 1 1.7079 -4.6154 0.0010 28 1 4.1679 -4.6088 0.0113 29 1 6.1896 -3.3758 -0.5136 30 1 6.1977 -1.5958 -0.5139 31 1 8.5366 -3.3871 0.9540 32 1 8.5454 -1.6071 0.9533 33 1 8.6091 -1.6057 3.4318 34 1 8.6004 -3.3857 3.4332 35 1 10.7268 -3.3962 2.1570 36 1 10.7349 -1.6163 2.1559 37 1 14.1666 -2.5210 3.1387 38 1 4.1855 -0.3458 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419502982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:49 Heat of formation + Delta-G solvation = -56.884792 kcal Electronic energy + Delta-G solvation = -17550.894482 eV Core-core repulsion = 14675.843640 eV Total energy + Delta-G solvation = -2875.050842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04980 -39.34182 -36.38991 -34.27940 -34.06880 -32.36628 -30.70785 -29.47949 -27.97728 -25.37359 -24.72637 -22.92589 -22.08455 -20.43933 -18.59904 -18.08919 -17.04538 -16.88485 -16.64294 -16.56875 -16.24333 -16.03851 -15.51999 -15.29859 -14.91791 -14.49687 -14.40247 -14.02726 -13.80954 -13.40291 -13.32083 -13.00916 -13.00623 -12.77774 -12.73923 -12.66739 -12.41136 -12.07630 -11.68457 -11.50616 -11.26289 -10.95489 -10.79281 -10.57934 -9.99226 -9.74940 -8.71795 -8.22966 -6.34327 -0.37578 0.05008 0.89194 1.39018 1.42201 1.42410 1.50299 1.65506 2.39631 2.83834 3.05497 3.10173 3.54650 3.79809 4.00260 4.01336 4.06509 4.08973 4.15980 4.30906 4.43259 4.51431 4.55777 4.65652 4.67879 4.78411 4.89649 4.93747 4.97437 5.10056 5.13299 5.30202 5.42138 5.45920 5.48507 5.65068 5.79517 5.88439 6.19978 6.51867 6.80855 7.34807 8.88607 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034359 B = 0.002524 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.721681 B =11093.034162 C =11441.322609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.391 3.609 3 O -0.511 6.511 4 C -0.193 4.193 5 C -0.056 4.056 6 C -0.128 4.128 7 C -0.073 4.073 8 C -0.096 4.096 9 C -0.040 4.040 10 S -0.290 6.290 11 C -0.069 4.069 12 C -0.080 4.080 13 C 0.031 3.969 14 C -0.547 4.547 15 H 0.058 0.942 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.066 4.066 23 H 0.115 0.885 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.175 0.825 27 H 0.166 0.834 28 H 0.144 0.856 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.056 0.944 35 H -0.002 1.002 36 H -0.005 1.005 37 H 0.265 0.735 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.933 -2.957 -9.680 30.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.273 3.727 3 O -0.390 6.390 4 C -0.194 4.194 5 C -0.075 4.075 6 C -0.146 4.146 7 C -0.093 4.093 8 C -0.098 4.098 9 C -0.187 4.187 10 S -0.060 6.060 11 C -0.217 4.217 12 C -0.119 4.119 13 C -0.007 4.007 14 C -0.585 4.585 15 H 0.076 0.924 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.086 4.086 23 H 0.134 0.866 24 H 0.107 0.893 25 H 0.136 0.864 26 H 0.192 0.808 27 H 0.184 0.816 28 H 0.161 0.839 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.017 0.983 36 H 0.013 0.987 37 H 0.074 0.926 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -28.995 -2.410 -8.803 30.397 hybrid contribution 1.999 0.274 -0.414 2.060 sum -26.995 -2.136 -9.216 28.605 Atomic orbital electron populations 1.22280 0.89814 1.06516 1.06336 1.23259 0.93793 0.86738 0.68890 1.90547 1.73526 1.35936 1.39022 1.20716 0.93760 0.96332 1.08546 1.21929 1.02032 0.90087 0.93423 1.21567 0.93373 0.99819 0.99847 1.21644 0.95615 0.97452 0.94571 1.19247 0.93027 0.94098 1.03387 1.22310 0.94911 1.06696 0.94751 1.87104 1.06741 1.98165 1.13942 1.23377 0.91707 1.04833 1.01762 1.21166 0.95690 1.01156 0.93903 1.18972 0.90586 0.95277 0.95913 1.21631 0.92197 1.51001 0.93681 0.92354 1.25978 0.98239 0.94574 1.00948 1.70077 1.05743 1.51393 1.29950 0.85488 0.77100 0.79207 0.79199 1.19080 1.20595 1.19301 1.21319 0.94388 0.97690 0.95241 0.86645 0.89266 0.86385 0.80813 0.81607 0.83852 0.87390 0.89197 0.89727 0.90462 0.92995 0.92491 0.98325 0.98666 0.92639 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.50 9.75 71.24 0.69 -0.81 16 2 C 0.39 7.35 7.23 28.03 0.20 7.56 16 3 O -0.51 -14.60 17.09 -2.94 -0.05 -14.66 16 4 C -0.19 -3.54 5.87 -20.15 -0.12 -3.66 16 5 C -0.06 -0.61 9.36 22.58 0.21 -0.39 16 6 C -0.13 -1.41 10.03 22.23 0.22 -1.19 16 7 C -0.07 -1.18 9.69 22.35 0.22 -0.96 16 8 C -0.10 -2.07 5.13 -19.91 -0.10 -2.17 16 9 C -0.04 -0.93 6.06 71.24 0.43 -0.50 16 10 S -0.29 -9.06 21.72 -56.49 -1.23 -10.28 16 11 C -0.07 -2.43 5.94 71.98 0.43 -2.00 16 12 C -0.08 -3.47 5.16 30.59 0.16 -3.32 16 13 C 0.03 1.68 4.97 29.85 0.15 1.83 16 14 C -0.55 -31.88 9.11 25.60 0.23 -31.64 16 15 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 16 C 0.00 0.04 5.46 84.65 0.46 0.50 16 17 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 18 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C -0.07 -1.55 9.25 22.58 0.21 -1.34 16 23 H 0.12 0.57 8.14 -2.39 -0.02 0.56 16 24 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.12 0.16 6.47 -2.39 -0.02 0.14 16 26 H 0.17 0.38 6.36 -2.91 -0.02 0.36 16 27 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 28 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 29 H 0.11 2.14 8.09 -2.39 -0.02 2.12 16 30 H 0.09 2.08 8.08 -2.39 -0.02 2.06 16 31 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.11 3.04 7.65 -2.91 -0.02 3.01 16 Total: -1.00 -73.90 339.93 5.46 -68.43 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 1.03 Total: 4.52 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 3.40 Total: -38.09 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.28 Total: -56.86 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.05 Total: -14.66 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.23 Total: -10.28 kcal Total: -73.90 5.46 -68.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419502982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.550 kcal (2) G-P(sol) polarization free energy of solvation -73.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds