Wall clock time and date at job start Tue Mar 31 2020 01:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21262 * 120.00004 * 2 1 4 4 C 1.47168 * 120.00520 * 180.02562 * 2 1 3 5 5 C 1.39851 * 120.17582 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82281 * 180.29957 * 5 4 2 7 7 C 1.38402 * 120.17407 * 359.43610 * 6 5 4 8 8 C 1.50696 * 119.82806 * 180.28065 * 7 6 5 9 9 S 1.81401 * 109.47520 * 270.27765 * 8 7 6 10 10 C 1.81401 * 102.99981 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.46731 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47047 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47532 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99689 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00552 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00016 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00625 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46895 * 59.99770 * 17 15 13 19 19 H 1.48494 * 109.47722 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46912 * 300.00620 * 17 15 13 21 21 C 1.38410 * 120.34833 * 0.56494 * 7 6 5 22 22 C 1.37892 * 120.16928 * 359.71584 * 21 7 6 23 23 H 1.09005 * 109.46530 * 269.99786 * 1 2 3 24 24 H 1.09000 * 109.47058 * 29.99503 * 1 2 3 25 25 H 1.08998 * 109.46815 * 149.99860 * 1 2 3 26 26 H 1.08002 * 120.08457 * 0.02562 * 5 4 2 27 27 H 1.07998 * 119.91348 * 179.72125 * 6 5 4 28 28 H 1.09002 * 109.46875 * 30.28498 * 8 7 6 29 29 H 1.09007 * 109.47167 * 150.27884 * 8 7 6 30 30 H 1.08995 * 109.47092 * 300.00207 * 10 9 8 31 31 H 1.09004 * 109.46866 * 60.00386 * 10 9 8 32 32 H 1.09001 * 109.47038 * 300.00121 * 11 10 9 33 33 H 1.08996 * 109.47536 * 60.00434 * 11 10 9 34 34 H 1.09001 * 109.47108 * 299.99843 * 12 11 10 35 35 H 1.09003 * 109.47413 * 59.99932 * 12 11 10 36 36 H 0.96991 * 120.00247 * 180.02562 * 16 15 13 37 37 H 1.07999 * 119.91764 * 179.69813 * 21 7 6 38 38 H 1.08001 * 120.08323 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 3.6414 -1.2786 0.0000 6 6 4.3236 -2.4769 -0.0068 7 6 3.6280 -3.6734 -0.0024 8 6 4.3815 -4.9785 -0.0035 9 16 4.6844 -5.5005 -1.7141 10 6 5.5862 -7.0613 -1.5108 11 6 5.9219 -7.6392 -2.8871 12 6 6.6820 -8.9559 -2.7158 13 6 7.0121 -9.5256 -4.0713 14 1 6.7103 -9.0007 -4.9657 15 6 7.7003 -10.7162 -4.1699 16 7 8.0682 -11.3552 -3.0808 17 14 8.1101 -11.4220 -5.8501 18 1 8.9537 -10.4569 -6.6000 19 1 8.8488 -12.6994 -5.6838 20 1 6.8541 -11.6701 -6.6025 21 6 2.2439 -3.6777 -0.0029 22 6 1.5473 -2.4877 -0.0019 23 1 -0.3632 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 4.1856 -0.3457 0.0012 27 1 5.4036 -2.4818 -0.0110 28 1 5.3337 -4.8486 0.5109 29 1 3.7922 -5.7387 0.5095 30 1 6.5083 -6.8789 -0.9590 31 1 4.9671 -7.7695 -0.9601 32 1 4.9999 -7.8215 -3.4393 33 1 6.5411 -6.9309 -3.4375 34 1 7.6039 -8.7741 -2.1634 35 1 6.0625 -9.6642 -2.1655 36 1 8.5526 -12.1926 -3.1501 37 1 1.7082 -4.6154 -0.0043 38 1 0.4673 -2.4926 -0.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419506710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:52 Heat of formation + Delta-G solvation = -40.491904 kcal Electronic energy + Delta-G solvation = -17422.029414 eV Core-core repulsion = 14547.689421 eV Total energy + Delta-G solvation = -2874.339993 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32115 -38.62416 -34.48980 -33.44460 -32.05211 -31.61415 -30.30215 -27.76884 -27.22899 -23.59016 -22.95775 -22.66828 -20.32652 -20.05225 -17.40965 -16.52478 -16.13958 -15.89497 -15.56016 -15.29267 -14.84021 -14.60981 -14.55509 -14.38568 -13.89551 -13.87363 -12.97680 -12.78659 -12.62215 -12.54924 -12.38842 -12.19426 -11.76349 -11.58973 -11.33006 -10.95003 -10.87497 -10.59179 -10.10572 -9.95971 -9.82541 -9.35599 -9.30333 -9.17525 -8.93114 -8.38846 -7.51817 -6.04009 -4.06734 0.21901 1.08426 1.67248 2.27068 2.78684 3.32129 3.36212 3.39221 3.54200 3.69267 4.35479 4.38716 4.43455 4.61713 4.66073 4.81356 4.98275 5.01512 5.10863 5.23169 5.31795 5.31868 5.45538 5.48226 5.56980 5.59647 5.70340 5.93561 6.06851 6.08191 6.21661 6.51129 6.54700 6.67500 6.97995 7.16521 7.59965 7.72008 7.94558 8.36293 8.99408 9.57577 11.07251 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.049755 B = 0.002288 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.618650 B =12232.633123 C =12319.216213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.396 3.604 3 O -0.462 6.462 4 C -0.177 4.177 5 C -0.060 4.060 6 C -0.116 4.116 7 C -0.030 4.030 8 C -0.060 4.060 9 S -0.264 6.264 10 C -0.075 4.075 11 C -0.095 4.095 12 C 0.028 3.972 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.117 4.117 22 C -0.072 4.072 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.261 0.739 37 H 0.133 0.867 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.451 18.642 10.061 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.275 3.725 3 O -0.338 6.338 4 C -0.179 4.179 5 C -0.078 4.078 6 C -0.135 4.135 7 C -0.031 4.031 8 C -0.207 4.207 9 S -0.033 6.033 10 C -0.223 4.223 11 C -0.134 4.134 12 C -0.011 4.011 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.136 4.136 22 C -0.090 4.090 23 H 0.116 0.884 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.321 19.512 9.185 25.888 hybrid contribution 0.637 -1.296 0.261 1.468 sum -13.684 18.216 9.446 24.664 Atomic orbital electron populations 1.22243 0.93743 1.05042 1.04782 1.22528 0.91702 0.87598 0.70694 1.90540 1.72188 1.34387 1.36663 1.20520 0.94665 0.94752 1.07927 1.21389 0.93143 0.98585 0.94663 1.21077 1.00621 0.91331 1.00508 1.19606 0.93738 0.93616 0.96179 1.22359 1.03066 0.97119 0.98200 1.87159 1.75735 1.31169 1.09263 1.23676 1.00826 0.93562 1.04228 1.21470 1.00881 0.99421 0.91623 1.19099 0.94848 0.89736 0.97407 1.21180 1.35998 1.06264 0.92558 0.92590 1.25023 0.95797 0.96947 0.96685 1.69949 1.39329 1.16675 1.27565 0.86621 0.78566 0.78292 0.84324 1.20181 1.21272 1.20175 1.21060 0.93362 0.98597 1.00627 1.21433 1.00082 0.91249 0.96256 0.88418 0.89386 0.89381 0.84820 0.84987 0.88996 0.88968 0.90456 0.90450 0.92364 0.92358 0.96429 0.96429 0.92891 0.84953 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.04 9.76 36.00 0.35 -0.68 16 2 C 0.40 3.61 7.23 -30.69 -0.22 3.38 16 3 O -0.46 -5.79 17.09 5.57 0.10 -5.69 16 4 C -0.18 -1.65 5.87 -105.06 -0.62 -2.27 16 5 C -0.06 -0.60 9.60 -39.11 -0.38 -0.98 16 6 C -0.12 -1.17 9.68 -39.65 -0.38 -1.55 16 7 C -0.03 -0.31 5.15 -104.50 -0.54 -0.85 16 8 C -0.06 -0.65 6.06 36.00 0.22 -0.44 16 9 S -0.26 -3.88 21.72 -107.50 -2.33 -6.22 16 10 C -0.07 -1.24 5.94 37.16 0.22 -1.02 16 11 C -0.09 -1.94 5.16 -26.73 -0.14 -2.08 16 12 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 13 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 17 Si 0.89 21.59 29.54 -169.99 -5.02 16.56 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.12 -1.05 9.68 -39.64 -0.38 -1.43 16 22 C -0.07 -0.56 9.37 -39.10 -0.37 -0.93 16 23 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.30 6.47 -51.93 -0.34 -0.03 16 26 H 0.13 1.30 7.65 -52.49 -0.40 0.90 16 27 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 28 H 0.09 0.92 8.08 -51.92 -0.42 0.50 16 29 H 0.09 0.90 8.08 -51.92 -0.42 0.48 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.13 0.64 6.36 -52.49 -0.33 0.30 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -31.94 339.92 -9.86 -41.80 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -5.68 Total: -3.88 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -2.78 Total: -21.76 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: 0.10 Total: -5.69 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -2.33 Total: -6.22 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.94 -9.86 -41.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419506710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.311 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds