Wall clock time and date at job start Tue Mar 31 2020 01:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21262 * 120.00004 * 2 1 4 4 C 1.47168 * 120.00520 * 180.02562 * 2 1 3 5 5 C 1.39851 * 120.17582 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82281 * 180.29957 * 5 4 2 7 7 C 1.38402 * 120.17407 * 359.43610 * 6 5 4 8 8 C 1.50696 * 119.82806 * 180.28065 * 7 6 5 9 9 S 1.81401 * 109.47520 * 270.27765 * 8 7 6 10 10 C 1.81401 * 102.99981 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.46731 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47047 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47532 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99689 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00552 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00016 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00625 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46895 * 59.99770 * 17 15 13 19 19 H 1.48494 * 109.47722 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46912 * 300.00620 * 17 15 13 21 21 C 1.38410 * 120.34833 * 0.56494 * 7 6 5 22 22 C 1.37892 * 120.16928 * 359.71584 * 21 7 6 23 23 H 1.09005 * 109.46530 * 269.99786 * 1 2 3 24 24 H 1.09000 * 109.47058 * 29.99503 * 1 2 3 25 25 H 1.08998 * 109.46815 * 149.99860 * 1 2 3 26 26 H 1.08002 * 120.08457 * 0.02562 * 5 4 2 27 27 H 1.07998 * 119.91348 * 179.72125 * 6 5 4 28 28 H 1.09002 * 109.46875 * 30.28498 * 8 7 6 29 29 H 1.09007 * 109.47167 * 150.27884 * 8 7 6 30 30 H 1.08995 * 109.47092 * 300.00207 * 10 9 8 31 31 H 1.09004 * 109.46866 * 60.00386 * 10 9 8 32 32 H 1.09001 * 109.47038 * 300.00121 * 11 10 9 33 33 H 1.08996 * 109.47536 * 60.00434 * 11 10 9 34 34 H 1.09001 * 109.47108 * 299.99843 * 12 11 10 35 35 H 1.09003 * 109.47413 * 59.99932 * 12 11 10 36 36 H 0.96991 * 120.00247 * 180.02562 * 16 15 13 37 37 H 1.07999 * 119.91764 * 179.69813 * 21 7 6 38 38 H 1.08001 * 120.08323 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 3.6414 -1.2786 0.0000 6 6 4.3236 -2.4769 -0.0068 7 6 3.6280 -3.6734 -0.0024 8 6 4.3815 -4.9785 -0.0035 9 16 4.6844 -5.5005 -1.7141 10 6 5.5862 -7.0613 -1.5108 11 6 5.9219 -7.6392 -2.8871 12 6 6.6820 -8.9559 -2.7158 13 6 7.0121 -9.5256 -4.0713 14 1 6.7103 -9.0007 -4.9657 15 6 7.7003 -10.7162 -4.1699 16 7 8.0682 -11.3552 -3.0808 17 14 8.1101 -11.4220 -5.8501 18 1 8.9537 -10.4569 -6.6000 19 1 8.8488 -12.6994 -5.6838 20 1 6.8541 -11.6701 -6.6025 21 6 2.2439 -3.6777 -0.0029 22 6 1.5473 -2.4877 -0.0019 23 1 -0.3632 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 4.1856 -0.3457 0.0012 27 1 5.4036 -2.4818 -0.0110 28 1 5.3337 -4.8486 0.5109 29 1 3.7922 -5.7387 0.5095 30 1 6.5083 -6.8789 -0.9590 31 1 4.9671 -7.7695 -0.9601 32 1 4.9999 -7.8215 -3.4393 33 1 6.5411 -6.9309 -3.4375 34 1 7.6039 -8.7741 -2.1634 35 1 6.0625 -9.6642 -2.1655 36 1 8.5526 -12.1926 -3.1501 37 1 1.7082 -4.6154 -0.0043 38 1 0.4673 -2.4926 -0.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419506710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:51 Heat of formation + Delta-G solvation = -56.389102 kcal Electronic energy + Delta-G solvation = -17422.718768 eV Core-core repulsion = 14547.689421 eV Total energy + Delta-G solvation = -2875.029348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03790 -39.37485 -36.36372 -34.19803 -34.04605 -32.29335 -30.89220 -29.45343 -28.17209 -25.38966 -23.72693 -23.48246 -22.04105 -20.77588 -18.58917 -18.08352 -17.11978 -16.86718 -16.56281 -16.31155 -16.20588 -15.99051 -15.42582 -15.22570 -15.00010 -14.56832 -14.43473 -13.97075 -13.89619 -13.36314 -13.32675 -13.04776 -12.99277 -12.82675 -12.72005 -12.69665 -12.36047 -12.00966 -11.65450 -11.47980 -11.24015 -10.91514 -10.80160 -10.56328 -9.99913 -9.76859 -8.67773 -8.21629 -6.32671 -0.54615 0.38683 0.69363 1.40177 1.42951 1.43027 1.51133 1.69916 2.40681 2.82666 3.07933 3.11605 3.57090 3.71074 3.96430 4.03992 4.04790 4.10418 4.21358 4.35164 4.50565 4.52461 4.59346 4.62857 4.67976 4.81767 4.85319 4.97361 5.03160 5.10865 5.12977 5.25631 5.40243 5.48197 5.48810 5.67791 5.81635 5.85189 6.21828 6.50397 6.82760 7.36447 8.89743 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.049755 B = 0.002288 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.618650 B =12232.633123 C =12319.216213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.395 3.605 3 O -0.507 6.507 4 C -0.187 4.187 5 C -0.077 4.077 6 C -0.124 4.124 7 C -0.045 4.045 8 C -0.046 4.046 9 S -0.284 6.284 10 C -0.069 4.069 11 C -0.081 4.081 12 C 0.031 3.969 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.964 3.036 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.267 1.267 21 C -0.120 4.120 22 C -0.060 4.060 23 H 0.118 0.882 24 H 0.089 0.911 25 H 0.111 0.889 26 H 0.127 0.873 27 H 0.135 0.865 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.052 0.948 34 H -0.004 1.004 35 H -0.002 1.002 36 H 0.264 0.736 37 H 0.150 0.850 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.379 18.867 9.912 26.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.277 3.723 3 O -0.386 6.386 4 C -0.189 4.189 5 C -0.095 4.095 6 C -0.143 4.143 7 C -0.046 4.046 8 C -0.193 4.193 9 S -0.054 6.054 10 C -0.217 4.217 11 C -0.120 4.120 12 C -0.008 4.008 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.192 1.192 21 C -0.139 4.139 22 C -0.078 4.078 23 H 0.137 0.863 24 H 0.108 0.892 25 H 0.130 0.870 26 H 0.145 0.855 27 H 0.153 0.847 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.015 0.985 35 H 0.016 0.984 36 H 0.073 0.927 37 H 0.168 0.832 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -16.257 19.728 9.029 27.111 hybrid contribution 1.183 -1.290 0.383 1.792 sum -15.074 18.438 9.412 25.608 Atomic orbital electron populations 1.22290 0.90229 1.06307 1.06408 1.23147 0.93582 0.86683 0.68886 1.90531 1.73400 1.35688 1.38994 1.20780 0.94483 0.95829 1.07780 1.21478 0.94056 0.98418 0.95577 1.21162 1.00968 0.91472 1.00733 1.19653 0.94529 0.93026 0.97427 1.22402 1.04046 0.97814 0.95045 1.87162 1.75263 1.29578 1.13366 1.23377 1.01625 0.95062 1.01641 1.21165 0.99812 0.96986 0.94037 1.18977 0.94141 0.91844 0.95815 1.21640 1.36210 1.06827 0.93768 0.92374 1.25958 0.95558 0.97366 1.00842 1.70072 1.39989 1.17139 1.29904 0.85509 0.78675 0.77598 0.79339 1.19310 1.20690 1.19157 1.21363 0.92913 0.99858 0.99805 1.21793 1.01852 0.89929 0.94235 0.86347 0.89239 0.87004 0.85511 0.84725 0.88167 0.87322 0.90162 0.89806 0.92627 0.92877 0.98544 0.98365 0.92679 0.83201 0.81074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.42 9.76 71.24 0.69 -0.73 16 2 C 0.40 6.68 7.23 28.03 0.20 6.88 16 3 O -0.51 -12.79 17.09 -2.97 -0.05 -12.85 16 4 C -0.19 -3.20 5.87 -20.15 -0.12 -3.32 16 5 C -0.08 -1.55 9.60 22.58 0.22 -1.33 16 6 C -0.12 -2.42 9.68 22.23 0.22 -2.21 16 7 C -0.04 -0.84 5.15 -19.79 -0.10 -0.95 16 8 C -0.05 -0.91 6.06 71.23 0.43 -0.48 16 9 S -0.28 -8.03 21.72 -56.49 -1.23 -9.26 16 10 C -0.07 -2.26 5.94 71.98 0.43 -1.83 16 11 C -0.08 -3.35 5.16 30.59 0.16 -3.20 16 12 C 0.03 1.62 4.97 29.85 0.15 1.77 16 13 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 14 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 15 C 0.00 0.04 5.46 84.65 0.46 0.51 16 16 N -0.93 -56.18 13.29 21.44 0.28 -55.89 16 17 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 C -0.12 -1.81 9.68 22.23 0.22 -1.59 16 22 C -0.06 -0.75 9.37 22.58 0.21 -0.54 16 23 H 0.12 0.43 8.14 -2.38 -0.02 0.42 16 24 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.11 0.28 6.47 -2.39 -0.02 0.26 16 26 H 0.13 2.61 7.65 -2.91 -0.02 2.59 16 27 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 28 H 0.10 1.84 8.08 -2.39 -0.02 1.82 16 29 H 0.11 1.83 8.08 -2.39 -0.02 1.81 16 30 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.26 15.00 8.31 -92.72 -0.77 14.23 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.17 0.79 6.36 -2.91 -0.02 0.77 16 Total: -1.00 -70.18 339.92 5.46 -64.72 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.03 Total: 5.03 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 3.40 Total: -37.97 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.28 Total: -55.89 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.05 Total: -12.85 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.23 Total: -9.26 kcal Total: -70.18 5.46 -64.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419506710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.330 kcal (2) G-P(sol) polarization free energy of solvation -70.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds