Wall clock time and date at job start Mon Mar 30 2020 23:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.46735 * 2 1 4 4 C 1.38383 * 119.85603 * 260.97305 * 3 2 1 5 5 C 1.37938 * 120.14802 * 179.71007 * 4 3 2 6 6 C 1.39587 * 119.85173 * 0.26860 * 5 4 3 7 7 C 1.47851 * 120.14532 * 179.97438 * 6 5 4 8 8 O 1.21552 * 119.99924 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99762 * 0.02562 * 7 6 5 10 10 C 1.46491 * 119.99893 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.47396 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99346 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00317 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99953 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99945 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47566 * 89.99516 * 15 13 11 17 17 H 1.48504 * 109.46988 * 209.99796 * 15 13 11 18 18 H 1.48499 * 109.46928 * 329.99522 * 15 13 11 19 19 C 1.39565 * 119.71425 * 0.02562 * 6 5 4 20 20 C 1.37981 * 119.85093 * 359.97438 * 19 6 5 21 21 N 1.48014 * 119.92770 * 180.02562 * 20 19 6 22 22 O 1.21801 * 119.99773 * 354.20661 * 21 20 19 23 23 O 1.21799 * 119.99561 * 174.20109 * 21 20 19 24 24 H 1.09004 * 109.46957 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47049 * 299.99673 * 1 2 3 26 26 H 1.09002 * 109.47362 * 59.99895 * 1 2 3 27 27 H 1.08998 * 109.47049 * 240.00327 * 2 1 3 28 28 H 1.08997 * 109.46923 * 119.99938 * 2 1 3 29 29 H 1.08000 * 119.92474 * 359.97438 * 4 3 2 30 30 H 1.07995 * 120.06974 * 180.29964 * 5 4 3 31 31 H 0.96999 * 119.99737 * 359.97438 * 9 7 6 32 32 H 1.09000 * 109.47374 * 300.00287 * 10 9 7 33 33 H 1.09004 * 109.47487 * 59.99825 * 10 9 7 34 34 H 0.96997 * 119.99944 * 180.02562 * 14 13 11 35 35 H 1.08000 * 120.07586 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4394 2.0076 -1.1853 5 6 2.8945 3.3097 -1.1932 6 6 2.9491 4.0339 -0.0011 7 6 3.4364 5.4298 -0.0020 8 8 3.4833 6.0578 1.0377 9 7 3.8285 6.0059 -1.1556 10 6 4.3108 7.3891 -1.1566 11 6 4.6841 7.7900 -2.5606 12 1 4.5728 7.0850 -3.3711 13 6 5.1667 9.0571 -2.8105 14 7 5.4929 9.4068 -4.0356 15 14 5.3586 10.2768 -1.4087 16 1 6.7156 10.1453 -0.8202 17 1 5.1745 11.6571 -1.9248 18 1 4.3380 9.9978 -0.3667 19 6 2.5428 3.4342 1.1918 20 6 2.0896 2.1310 1.1859 21 7 1.6578 1.4935 2.4500 22 8 1.8009 2.0802 3.5078 23 8 1.1592 0.3824 2.4323 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3967 1.4462 -2.1069 30 1 3.2074 3.7680 -2.1197 31 1 3.7914 5.5045 -1.9852 32 1 3.5252 8.0481 -0.7869 33 1 5.1857 7.4694 -0.5115 34 1 5.8328 10.2981 -4.2114 35 1 2.5831 3.9890 2.1176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427605980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:45 Heat of formation + Delta-G solvation = -18.703731 kcal Electronic energy + Delta-G solvation = -20803.900687 eV Core-core repulsion = 17384.212285 eV Total energy + Delta-G solvation = -3419.688402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43270 -40.30086 -38.61542 -36.84912 -34.66978 -34.41690 -32.65862 -32.07923 -30.43201 -28.16803 -26.62263 -24.92226 -22.95145 -22.55844 -21.81877 -20.63363 -19.14910 -18.72129 -17.71571 -17.37410 -16.63851 -16.31647 -15.84132 -15.09822 -14.93718 -14.61201 -14.34353 -14.04711 -13.88137 -13.32254 -13.15906 -12.60391 -12.49029 -12.22362 -12.14252 -11.87565 -11.62030 -11.49185 -11.16538 -11.12640 -10.88044 -10.68266 -10.08909 -9.92590 -9.72055 -9.62163 -9.41310 -8.91252 -8.40884 -6.32919 -4.36881 -0.34332 0.38962 1.13628 1.23655 2.59626 3.18980 3.26052 3.33611 3.47422 3.53678 4.02435 4.04013 4.23319 4.44905 4.55291 4.58497 4.85381 4.88757 4.97756 5.02475 5.20415 5.35415 5.39333 5.59349 5.61593 5.68876 5.80295 5.90307 5.94533 6.34688 6.62177 6.89522 6.91903 7.20275 7.54478 7.90173 8.27398 8.50939 8.65928 9.25776 10.78685 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033441 B = 0.003650 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.083098 B = 7670.385516 C = 8400.366733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C 0.000 4.000 4 C -0.126 4.126 5 C -0.033 4.033 6 C -0.125 4.125 7 C 0.542 3.458 8 O -0.542 6.542 9 N -0.693 5.693 10 C 0.219 3.781 11 C -0.549 4.549 12 H 0.080 0.920 13 C 0.080 3.920 14 N -0.889 5.889 15 Si 0.876 3.124 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.260 1.260 19 C 0.001 3.999 20 C -0.055 4.055 21 N 0.033 4.967 22 O -0.165 6.165 23 O -0.155 6.155 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.396 0.604 32 H 0.030 0.970 33 H 0.026 0.974 34 H 0.269 0.731 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.673 -18.345 4.397 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.139 4.139 3 C -0.002 4.002 4 C -0.144 4.144 5 C -0.051 4.051 6 C -0.129 4.129 7 C 0.327 3.673 8 O -0.422 6.422 9 N -0.341 5.341 10 C 0.098 3.902 11 C -0.587 4.587 12 H 0.098 0.902 13 C -0.124 4.124 14 N -0.526 5.526 15 Si 0.702 3.298 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.185 1.185 19 C -0.019 4.019 20 C -0.138 4.138 21 N 0.550 4.450 22 O -0.379 6.379 23 O -0.370 6.370 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.121 0.879 29 H 0.170 0.830 30 H 0.169 0.831 31 H 0.231 0.769 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.341 -17.375 4.401 19.369 hybrid contribution 0.122 0.425 0.427 0.615 sum -7.219 -16.950 4.828 19.046 Atomic orbital electron populations 1.21682 0.93171 1.02815 1.02025 1.21036 0.97692 0.90336 1.04882 1.20090 0.92408 0.97196 0.90482 1.21103 1.00638 0.95257 0.97402 1.21917 0.91416 0.93561 0.98252 1.20186 1.03597 0.96241 0.92881 1.17961 0.79220 0.85172 0.84961 1.90780 1.55547 1.64162 1.31694 1.46139 1.62915 1.16676 1.08351 1.19615 0.94812 0.77197 0.98617 1.21024 1.45783 1.00097 0.91770 0.90186 1.24777 0.93983 0.97861 0.95825 1.69865 1.42654 1.20590 1.19466 0.86824 0.79703 0.80614 0.82625 1.19722 1.20747 1.18452 1.21101 0.89229 0.91002 1.00534 1.20799 1.13155 0.95548 0.84322 1.43497 0.98381 1.00465 1.02628 1.94583 1.59745 1.64942 1.18602 1.94442 1.43595 1.05417 1.93550 0.91322 0.92080 0.92813 0.90084 0.87917 0.82961 0.83138 0.76862 0.95190 0.95638 0.92089 0.81713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.38 37.16 0.35 -0.72 16 2 C -0.10 -0.80 5.32 -27.88 -0.15 -0.95 16 3 C 0.00 0.00 5.14 -104.53 -0.54 -0.54 16 4 C -0.13 -1.03 9.65 -39.64 -0.38 -1.42 16 5 C -0.03 -0.33 9.54 -39.19 -0.37 -0.70 16 6 C -0.12 -1.70 5.87 -104.97 -0.62 -2.31 16 7 C 0.54 9.74 7.77 -12.33 -0.10 9.65 16 8 O -0.54 -11.77 16.35 5.32 0.09 -11.68 16 9 N -0.69 -12.88 5.50 -62.43 -0.34 -13.22 16 10 C 0.22 5.08 4.50 -5.20 -0.02 5.05 16 11 C -0.55 -14.26 9.83 -34.44 -0.34 -14.60 16 12 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 13 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 14 N -0.89 -25.44 13.96 55.43 0.77 -24.66 16 15 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 19 C 0.00 0.02 9.10 -39.18 -0.36 -0.34 16 20 C -0.05 -0.68 6.83 -80.00 -0.55 -1.22 16 21 N 0.03 0.45 4.45 33.93 0.15 0.60 16 22 O -0.17 -2.48 18.45 -29.46 -0.54 -3.03 16 23 O -0.16 -1.97 13.44 -29.46 -0.40 -2.37 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.45 8.01 -51.93 -0.42 0.04 16 28 H 0.10 0.90 5.96 -51.93 -0.31 0.59 16 29 H 0.15 0.76 8.04 -52.49 -0.42 0.34 16 30 H 0.15 1.22 6.41 -52.49 -0.34 0.89 16 31 H 0.40 6.17 6.36 -40.82 -0.26 5.91 16 32 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 33 H 0.03 0.62 7.57 -51.93 -0.39 0.22 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.17 2.38 7.21 -52.49 -0.38 2.01 16 LS Contribution 304.51 15.07 4.59 4.59 Total: -1.00 -31.28 304.51 -7.17 -38.45 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -3.65 Total: 1.39 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -3.17 Total: -6.03 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.58 Total: -37.28 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.85 Total: -17.08 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.28 -7.17 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427605980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.743 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds