Wall clock time and date at job start Mon Mar 30 2020 23:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.46735 * 2 1 4 4 C 1.38383 * 119.85603 * 260.97305 * 3 2 1 5 5 C 1.37938 * 120.14802 * 179.71007 * 4 3 2 6 6 C 1.39587 * 119.85173 * 0.26860 * 5 4 3 7 7 C 1.47851 * 120.14532 * 179.97438 * 6 5 4 8 8 O 1.21552 * 119.99924 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99762 * 0.02562 * 7 6 5 10 10 C 1.46491 * 119.99893 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.47396 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99346 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00317 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99953 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99945 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47566 * 89.99516 * 15 13 11 17 17 H 1.48504 * 109.46988 * 209.99796 * 15 13 11 18 18 H 1.48499 * 109.46928 * 329.99522 * 15 13 11 19 19 C 1.39565 * 119.71425 * 0.02562 * 6 5 4 20 20 C 1.37981 * 119.85093 * 359.97438 * 19 6 5 21 21 N 1.48014 * 119.92770 * 180.02562 * 20 19 6 22 22 O 1.21801 * 119.99773 * 354.20661 * 21 20 19 23 23 O 1.21799 * 119.99561 * 174.20109 * 21 20 19 24 24 H 1.09004 * 109.46957 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47049 * 299.99673 * 1 2 3 26 26 H 1.09002 * 109.47362 * 59.99895 * 1 2 3 27 27 H 1.08998 * 109.47049 * 240.00327 * 2 1 3 28 28 H 1.08997 * 109.46923 * 119.99938 * 2 1 3 29 29 H 1.08000 * 119.92474 * 359.97438 * 4 3 2 30 30 H 1.07995 * 120.06974 * 180.29964 * 5 4 3 31 31 H 0.96999 * 119.99737 * 359.97438 * 9 7 6 32 32 H 1.09000 * 109.47374 * 300.00287 * 10 9 7 33 33 H 1.09004 * 109.47487 * 59.99825 * 10 9 7 34 34 H 0.96997 * 119.99944 * 180.02562 * 14 13 11 35 35 H 1.08000 * 120.07586 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4394 2.0076 -1.1853 5 6 2.8945 3.3097 -1.1932 6 6 2.9491 4.0339 -0.0011 7 6 3.4364 5.4298 -0.0020 8 8 3.4833 6.0578 1.0377 9 7 3.8285 6.0059 -1.1556 10 6 4.3108 7.3891 -1.1566 11 6 4.6841 7.7900 -2.5606 12 1 4.5728 7.0850 -3.3711 13 6 5.1667 9.0571 -2.8105 14 7 5.4929 9.4068 -4.0356 15 14 5.3586 10.2768 -1.4087 16 1 6.7156 10.1453 -0.8202 17 1 5.1745 11.6571 -1.9248 18 1 4.3380 9.9978 -0.3667 19 6 2.5428 3.4342 1.1918 20 6 2.0896 2.1310 1.1859 21 7 1.6578 1.4935 2.4500 22 8 1.8009 2.0802 3.5078 23 8 1.1592 0.3824 2.4323 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3967 1.4462 -2.1069 30 1 3.2074 3.7680 -2.1197 31 1 3.7914 5.5045 -1.9852 32 1 3.5252 8.0481 -0.7869 33 1 5.1857 7.4694 -0.5115 34 1 5.8328 10.2981 -4.2114 35 1 2.5831 3.9890 2.1176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427605980.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:45 Heat of formation + Delta-G solvation = -38.763344 kcal Electronic energy + Delta-G solvation = -20804.770537 eV Core-core repulsion = 17384.212285 eV Total energy + Delta-G solvation = -3420.558252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.45644 -41.45701 -39.85289 -37.89255 -36.38244 -35.29128 -34.48649 -33.10938 -31.39225 -29.88210 -27.61249 -26.02341 -24.13111 -23.75343 -22.90900 -21.95040 -20.45172 -19.79112 -18.88480 -18.74523 -18.08825 -17.49627 -16.87525 -16.46186 -16.43729 -16.08961 -15.30955 -15.02259 -14.82687 -14.72744 -14.43652 -14.26873 -13.85229 -13.18858 -13.11762 -13.02211 -12.75118 -12.70857 -12.55250 -12.35762 -12.07580 -11.96643 -11.68587 -11.47708 -11.21804 -10.94396 -10.80959 -10.38038 -10.04071 -8.41937 -6.49116 -1.30648 -0.59424 0.18779 0.26141 1.31571 1.35323 1.45955 1.50425 2.09906 2.26398 2.35350 2.94041 3.16965 3.23659 3.54223 3.61513 3.64464 3.91321 4.21072 4.39085 4.42675 4.50840 4.70835 4.74765 4.79612 4.84802 4.96353 4.99739 5.11169 5.18474 5.22017 5.30780 5.33278 5.48241 6.02941 6.47917 6.49205 6.63784 7.05677 7.21872 8.72196 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033441 B = 0.003650 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.083098 B = 7670.385516 C = 8400.366733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C 0.012 3.988 4 C -0.104 4.104 5 C -0.018 4.018 6 C -0.141 4.141 7 C 0.545 3.455 8 O -0.588 6.588 9 N -0.689 5.689 10 C 0.229 3.771 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.031 3.969 14 N -0.927 5.927 15 Si 0.931 3.069 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.261 1.261 19 C -0.010 4.010 20 C -0.067 4.067 21 N 0.033 4.967 22 O -0.231 6.231 23 O -0.116 6.116 24 H 0.085 0.915 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.203 0.797 30 H 0.175 0.825 31 H 0.412 0.588 32 H 0.017 0.983 33 H 0.016 0.984 34 H 0.273 0.727 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 -20.808 2.698 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.140 4.140 3 C 0.011 3.989 4 C -0.121 4.121 5 C -0.037 4.037 6 C -0.145 4.145 7 C 0.332 3.668 8 O -0.470 6.470 9 N -0.339 5.339 10 C 0.106 3.894 11 C -0.584 4.584 12 H 0.085 0.915 13 C -0.170 4.170 14 N -0.566 5.566 15 Si 0.755 3.245 16 H -0.191 1.191 17 H -0.199 1.199 18 H -0.185 1.185 19 C -0.030 4.030 20 C -0.151 4.151 21 N 0.547 4.453 22 O -0.429 6.429 23 O -0.344 6.344 24 H 0.104 0.896 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.111 0.889 29 H 0.220 0.780 30 H 0.192 0.808 31 H 0.250 0.750 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.889 -19.757 2.779 21.454 hybrid contribution 0.218 0.953 0.825 1.279 sum -7.671 -18.804 3.605 20.626 Atomic orbital electron populations 1.21701 0.92908 1.03767 1.01385 1.21170 0.97704 0.88773 1.06325 1.20571 0.90635 0.98057 0.89666 1.21618 0.97869 0.94251 0.98388 1.22204 0.89979 0.94117 0.97360 1.19723 1.06162 0.94106 0.94509 1.18516 0.77870 0.86669 0.83747 1.90751 1.57257 1.65810 1.33202 1.45865 1.63151 1.15257 1.09582 1.19220 0.94075 0.79551 0.96588 1.21234 1.44772 0.99802 0.92622 0.91473 1.25510 0.93993 0.99735 0.97759 1.69956 1.44092 1.21348 1.21178 0.85953 0.79740 0.78866 0.79938 1.19095 1.19921 1.18534 1.20898 0.90436 0.91817 0.99884 1.20890 1.14286 0.95396 0.84509 1.43694 0.98191 1.00437 1.02964 1.94605 1.62867 1.65763 1.19616 1.94398 1.41333 1.05020 1.93607 0.89646 0.94545 0.91641 0.86283 0.88891 0.77982 0.80782 0.74980 0.96510 0.96620 0.91796 0.84137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.38 71.98 0.68 -0.93 16 2 C -0.10 -1.13 5.32 29.85 0.16 -0.98 16 3 C 0.01 0.20 5.14 -19.81 -0.10 0.09 16 4 C -0.10 -1.15 9.65 22.23 0.21 -0.94 16 5 C -0.02 -0.30 9.54 22.52 0.21 -0.08 16 6 C -0.14 -3.72 5.87 -20.09 -0.12 -3.84 16 7 C 0.54 19.73 7.77 86.79 0.67 20.40 16 8 O -0.59 -26.51 16.35 -3.88 -0.06 -26.58 16 9 N -0.69 -25.29 5.50 -469.71 -2.58 -27.87 16 10 C 0.23 10.63 4.50 85.64 0.38 11.02 16 11 C -0.55 -28.38 9.83 25.60 0.25 -28.13 16 12 H 0.07 3.58 7.84 -2.91 -0.02 3.56 16 13 C 0.03 1.68 5.47 84.65 0.46 2.14 16 14 N -0.93 -53.21 13.96 21.45 0.30 -52.91 16 15 Si 0.93 42.58 27.47 68.60 1.88 44.47 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.26 -11.88 6.54 99.48 0.65 -11.23 16 19 C -0.01 -0.28 9.10 22.53 0.21 -0.07 16 20 C -0.07 -1.60 6.83 36.34 0.25 -1.35 16 21 N 0.03 0.90 4.45 -46.55 -0.21 0.70 16 22 O -0.23 -7.47 18.45 18.88 0.35 -7.13 16 23 O -0.12 -2.81 13.44 18.89 0.25 -2.55 16 24 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.04 0.60 6.54 -2.39 -0.02 0.58 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.12 0.52 8.01 -2.39 -0.02 0.50 16 28 H 0.09 1.28 5.96 -2.39 -0.01 1.27 16 29 H 0.20 0.39 8.04 -2.91 -0.02 0.37 16 30 H 0.17 2.05 6.41 -2.91 -0.02 2.04 16 31 H 0.41 12.17 6.36 -92.71 -0.59 11.58 16 32 H 0.02 0.83 7.20 -2.39 -0.02 0.82 16 33 H 0.02 0.77 7.57 -2.38 -0.02 0.75 16 34 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.14 4.51 7.21 -2.91 -0.02 4.49 16 Total: -1.00 -70.86 304.51 3.70 -67.16 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.50 Total: 7.36 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 3.27 Total: -2.65 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.49 Total: -80.08 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: 0.54 Total: -36.26 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.88 Total: 44.47 kcal Total: -70.86 3.70 -67.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427605980.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.400 kcal (2) G-P(sol) polarization free energy of solvation -70.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds