Wall clock time and date at job start Tue Mar 31 2020 01:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47267 * 2 1 4 4 C 1.36782 * 119.99732 * 278.08374 * 3 2 1 5 5 H 1.07996 * 119.99817 * 179.62546 * 4 3 2 6 6 C 1.39118 * 120.00057 * 359.62090 * 4 3 2 7 7 N 1.31323 * 119.99723 * 11.53453 * 6 4 3 8 8 Si 1.86797 * 120.00039 * 191.53610 * 6 4 3 9 9 H 1.48502 * 109.47453 * 90.00093 * 8 6 4 10 10 H 1.48496 * 109.47164 * 210.00088 * 8 6 4 11 11 H 1.48495 * 109.47009 * 329.99944 * 8 6 4 12 12 C 1.34770 * 120.00210 * 98.07320 * 3 2 1 13 13 O 1.21565 * 120.00414 * 186.07167 * 12 3 2 14 14 C 1.47987 * 120.00264 * 6.07713 * 12 3 2 15 15 C 1.39907 * 120.89205 * 315.39505 * 14 12 3 16 16 C 1.38475 * 119.18518 * 180.02562 * 15 14 12 17 17 N 1.31479 * 121.04585 * 0.02562 * 16 15 14 18 18 C 1.32735 * 121.98039 * 359.65198 * 17 16 15 19 19 C 1.48063 * 119.65500 * 180.34434 * 18 17 16 20 20 O 1.21434 * 119.99529 * 180.29307 * 19 18 17 21 21 O 1.34678 * 120.00225 * 0.28779 * 19 18 17 22 22 C 1.45200 * 116.99984 * 180.02562 * 21 19 18 23 23 C 1.39238 * 120.68365 * 0.63467 * 18 17 16 24 24 H 1.08992 * 109.47338 * 309.08095 * 1 2 3 25 25 H 1.08999 * 109.46830 * 69.08764 * 1 2 3 26 26 H 1.09008 * 109.46831 * 189.08405 * 1 2 3 27 27 H 1.08993 * 109.47282 * 239.99493 * 2 1 3 28 28 H 1.09001 * 109.47067 * 119.99691 * 2 1 3 29 29 H 0.97005 * 119.99409 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.40942 * 359.97438 * 15 14 12 31 31 H 1.07992 * 119.47457 * 179.97438 * 16 15 14 32 32 H 1.08999 * 109.46818 * 180.02562 * 22 21 19 33 33 H 1.08995 * 109.47048 * 300.00171 * 22 21 19 34 34 H 1.08997 * 109.46831 * 60.00197 * 22 21 19 35 35 H 1.07998 * 120.55579 * 179.68016 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0893 2.0815 -1.1728 5 1 2.4436 3.1017 -1.1720 6 6 1.7051 1.4795 -2.3667 7 7 1.0666 0.3321 -2.3478 8 14 2.0975 2.3033 -3.9967 9 1 3.4238 1.8406 -4.4786 10 1 1.0567 1.9476 -4.9943 11 1 2.1241 3.7766 -3.8129 12 6 2.3976 1.9619 1.1555 13 8 2.6976 3.1398 1.1742 14 6 2.4489 1.1657 2.4019 15 6 1.4108 0.2901 2.7381 16 6 1.4951 -0.4375 3.9134 17 7 2.5317 -0.3164 4.7129 18 6 3.5436 0.4961 4.4340 19 6 4.6892 0.5867 5.3676 20 8 5.6157 1.3320 5.1212 21 8 4.7036 -0.1573 6.4901 22 6 5.8583 -0.0169 7.3592 23 6 3.5360 1.2686 3.2756 24 1 -0.3633 0.6478 0.7977 25 1 -0.3633 0.3668 -0.9600 26 1 -0.3633 -1.0149 0.1623 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.7985 -0.0874 -3.1803 30 1 0.5539 0.1835 2.0896 31 1 0.6962 -1.1144 4.1777 32 1 5.7434 -0.6700 8.2243 33 1 6.7600 -0.2935 6.8129 34 1 5.9384 1.0177 7.6926 35 1 4.3580 1.9328 3.0532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434199247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:20 Heat of formation + Delta-G solvation = -46.852569 kcal Electronic energy + Delta-G solvation = -21437.363462 eV Core-core repulsion = 18016.454435 eV Total energy + Delta-G solvation = -3420.909027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76523 -39.75733 -38.24696 -36.44825 -35.41533 -32.86145 -31.61176 -31.33400 -29.70054 -27.90782 -25.84218 -24.55650 -23.50915 -22.30507 -21.51514 -19.81420 -17.78195 -17.39907 -16.94496 -16.40652 -16.30205 -15.99900 -15.36929 -14.85081 -14.41760 -14.07646 -13.93072 -13.76918 -13.58385 -13.07047 -12.93022 -12.58155 -12.20268 -12.03091 -11.54825 -11.28993 -11.24564 -10.91346 -10.82717 -10.75663 -10.47555 -10.34348 -10.26391 -9.63063 -9.46378 -9.12478 -8.98199 -8.61417 -8.01354 -6.46498 -4.00190 0.62896 1.22387 2.44267 2.57426 3.04409 3.14207 3.19158 3.62070 3.89975 4.08644 4.22613 4.52600 4.86185 4.97721 5.01993 5.09699 5.14282 5.19507 5.22341 5.40293 5.56095 5.86604 5.95565 6.04850 6.22206 6.36639 6.47231 6.52421 6.61640 6.68194 7.17189 7.39470 7.57042 7.62945 7.83546 7.97492 8.29088 8.93980 9.16589 9.72173 10.39563 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030953 B = 0.004427 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.394667 B = 6322.961581 C = 6888.997798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.101 3.899 3 N -0.417 5.417 4 C -0.291 4.291 5 H 0.110 0.890 6 C 0.025 3.975 7 N -0.865 5.865 8 Si 0.936 3.064 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.458 3.542 13 O -0.585 6.585 14 C -0.051 4.051 15 C -0.130 4.130 16 C 0.089 3.911 17 N -0.441 5.441 18 C 0.074 3.926 19 C 0.528 3.472 20 O -0.499 6.499 21 O -0.336 6.336 22 C 0.033 3.967 23 C -0.067 4.067 24 H 0.026 0.974 25 H 0.101 0.899 26 H 0.040 0.960 27 H 0.121 0.879 28 H 0.037 0.963 29 H 0.270 0.730 30 H 0.161 0.839 31 H 0.166 0.834 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 -6.186 10.099 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 N -0.133 5.133 4 C -0.419 4.419 5 H 0.128 0.872 6 C -0.177 4.177 7 N -0.506 5.506 8 Si 0.763 3.237 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.192 1.192 12 C 0.247 3.753 13 O -0.472 6.472 14 C -0.062 4.062 15 C -0.150 4.150 16 C -0.071 4.071 17 N -0.153 5.153 18 C -0.061 4.061 19 C 0.371 3.629 20 O -0.386 6.386 21 O -0.251 6.251 22 C -0.061 4.061 23 C -0.088 4.088 24 H 0.045 0.955 25 H 0.120 0.880 26 H 0.059 0.941 27 H 0.139 0.861 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.178 0.822 31 H 0.184 0.816 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.402 -5.994 10.641 12.293 hybrid contribution 0.154 0.660 -1.397 1.553 sum 1.556 -5.333 9.244 10.785 Atomic orbital electron populations 1.22353 0.96279 0.98881 1.03417 1.22139 0.94984 0.83188 1.01882 1.43797 1.51676 1.12103 1.05685 1.19961 1.40198 0.99007 0.82696 0.87192 1.25390 0.95689 0.96527 1.00112 1.70041 1.35716 1.17178 1.27621 0.85742 0.78286 0.79661 0.80055 1.20114 1.20706 1.19222 1.17537 0.87792 0.87307 0.82650 1.90646 1.56296 1.15260 1.84968 1.20697 0.93723 0.95384 0.96439 1.23366 0.99957 0.94144 0.97573 1.22730 0.95623 0.98424 0.90356 1.67436 1.00274 1.16088 1.31529 1.19731 0.93712 0.98805 0.93890 1.20830 0.85041 0.77013 0.80001 1.90857 1.35975 1.37218 1.74516 1.86679 1.44831 1.61476 1.32139 1.23312 0.86853 1.02954 0.92943 1.22083 0.98634 0.96583 0.91535 0.95544 0.88023 0.94133 0.86114 0.94459 0.91893 0.82200 0.81645 0.87983 0.91849 0.91849 0.82998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.57 37.16 0.32 -2.57 16 2 C 0.10 2.11 4.89 -4.04 -0.02 2.09 16 3 N -0.42 -10.15 2.64 -115.84 -0.31 -10.46 16 4 C -0.29 -7.57 9.49 -15.02 -0.14 -7.71 16 5 H 0.11 3.04 7.19 -52.49 -0.38 2.66 16 6 C 0.03 0.60 5.34 -17.44 -0.09 0.51 16 7 N -0.86 -20.05 7.25 55.50 0.40 -19.65 16 8 Si 0.94 19.27 29.57 -169.99 -5.03 14.25 16 9 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 12 C 0.46 11.17 7.28 -12.27 -0.09 11.08 16 13 O -0.59 -16.31 16.59 5.31 0.09 -16.22 16 14 C -0.05 -1.02 5.14 -104.67 -0.54 -1.55 16 15 C -0.13 -2.14 7.51 -38.87 -0.29 -2.43 16 16 C 0.09 1.27 11.17 -17.62 -0.20 1.07 16 17 N -0.44 -7.17 10.09 -9.88 -0.10 -7.27 16 18 C 0.07 1.29 6.74 -83.08 -0.56 0.73 16 19 C 0.53 8.77 7.95 34.76 0.28 9.04 16 20 O -0.50 -9.04 16.11 -19.21 -0.31 -9.35 16 21 O -0.34 -4.80 10.38 -40.43 -0.42 -5.22 16 22 C 0.03 0.33 10.56 101.05 1.07 1.40 16 23 C -0.07 -1.27 9.33 -38.61 -0.36 -1.63 16 24 H 0.03 0.48 6.50 -51.93 -0.34 0.14 16 25 H 0.10 2.22 5.88 -51.93 -0.31 1.91 16 26 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.12 2.75 5.74 -51.93 -0.30 2.45 16 28 H 0.04 0.70 4.98 -51.93 -0.26 0.44 16 29 H 0.27 5.93 8.31 -40.82 -0.34 5.59 16 30 H 0.16 2.52 3.84 -52.49 -0.20 2.32 16 31 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.15 2.98 7.64 -52.49 -0.40 2.58 16 LS Contribution 298.61 15.07 4.50 4.50 Total: -1.00 -29.70 298.61 -5.23 -34.93 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.43 Total: 4.46 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -0.63 Total: 10.01 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.00 Total: -37.37 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.64 Total: -30.78 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.70 -5.23 -34.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434199247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.922 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds