Wall clock time and date at job start Tue Mar 31 2020 01:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47267 * 2 1 4 4 C 1.36782 * 119.99732 * 278.08374 * 3 2 1 5 5 H 1.07996 * 119.99817 * 179.62546 * 4 3 2 6 6 C 1.39118 * 120.00057 * 359.62090 * 4 3 2 7 7 N 1.31323 * 119.99723 * 11.53453 * 6 4 3 8 8 Si 1.86797 * 120.00039 * 191.53610 * 6 4 3 9 9 H 1.48502 * 109.47453 * 90.00093 * 8 6 4 10 10 H 1.48496 * 109.47164 * 210.00088 * 8 6 4 11 11 H 1.48495 * 109.47009 * 329.99944 * 8 6 4 12 12 C 1.34770 * 120.00210 * 98.07320 * 3 2 1 13 13 O 1.21565 * 120.00414 * 186.07167 * 12 3 2 14 14 C 1.47987 * 120.00264 * 6.07713 * 12 3 2 15 15 C 1.39907 * 120.89205 * 315.39505 * 14 12 3 16 16 C 1.38475 * 119.18518 * 180.02562 * 15 14 12 17 17 N 1.31479 * 121.04585 * 0.02562 * 16 15 14 18 18 C 1.32735 * 121.98039 * 359.65198 * 17 16 15 19 19 C 1.48063 * 119.65500 * 180.34434 * 18 17 16 20 20 O 1.21434 * 119.99529 * 180.29307 * 19 18 17 21 21 O 1.34678 * 120.00225 * 0.28779 * 19 18 17 22 22 C 1.45200 * 116.99984 * 180.02562 * 21 19 18 23 23 C 1.39238 * 120.68365 * 0.63467 * 18 17 16 24 24 H 1.08992 * 109.47338 * 309.08095 * 1 2 3 25 25 H 1.08999 * 109.46830 * 69.08764 * 1 2 3 26 26 H 1.09008 * 109.46831 * 189.08405 * 1 2 3 27 27 H 1.08993 * 109.47282 * 239.99493 * 2 1 3 28 28 H 1.09001 * 109.47067 * 119.99691 * 2 1 3 29 29 H 0.97005 * 119.99409 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.40942 * 359.97438 * 15 14 12 31 31 H 1.07992 * 119.47457 * 179.97438 * 16 15 14 32 32 H 1.08999 * 109.46818 * 180.02562 * 22 21 19 33 33 H 1.08995 * 109.47048 * 300.00171 * 22 21 19 34 34 H 1.08997 * 109.46831 * 60.00197 * 22 21 19 35 35 H 1.07998 * 120.55579 * 179.68016 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0893 2.0815 -1.1728 5 1 2.4436 3.1017 -1.1720 6 6 1.7051 1.4795 -2.3667 7 7 1.0666 0.3321 -2.3478 8 14 2.0975 2.3033 -3.9967 9 1 3.4238 1.8406 -4.4786 10 1 1.0567 1.9476 -4.9943 11 1 2.1241 3.7766 -3.8129 12 6 2.3976 1.9619 1.1555 13 8 2.6976 3.1398 1.1742 14 6 2.4489 1.1657 2.4019 15 6 1.4108 0.2901 2.7381 16 6 1.4951 -0.4375 3.9134 17 7 2.5317 -0.3164 4.7129 18 6 3.5436 0.4961 4.4340 19 6 4.6892 0.5867 5.3676 20 8 5.6157 1.3320 5.1212 21 8 4.7036 -0.1573 6.4901 22 6 5.8583 -0.0169 7.3592 23 6 3.5360 1.2686 3.2756 24 1 -0.3633 0.6478 0.7977 25 1 -0.3633 0.3668 -0.9600 26 1 -0.3633 -1.0149 0.1623 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.7985 -0.0874 -3.1803 30 1 0.5539 0.1835 2.0896 31 1 0.6962 -1.1144 4.1777 32 1 5.7434 -0.6700 8.2243 33 1 6.7600 -0.2935 6.8129 34 1 5.9384 1.0177 7.6926 35 1 4.3580 1.9328 3.0532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434199247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:20 Heat of formation + Delta-G solvation = -65.611179 kcal Electronic energy + Delta-G solvation = -21438.176896 eV Core-core repulsion = 18016.454435 eV Total energy + Delta-G solvation = -3421.722461 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.11448 -41.16991 -39.87101 -37.65468 -37.28761 -34.48579 -33.23860 -32.77904 -31.35506 -28.85311 -27.61221 -25.88417 -25.01247 -23.94162 -22.86708 -21.34409 -19.29458 -18.88868 -18.59450 -17.78517 -17.55250 -17.40347 -16.91107 -16.50073 -16.03247 -15.54306 -15.46587 -15.11641 -14.95994 -14.57131 -14.27722 -14.15022 -13.71592 -13.24801 -13.05351 -12.90646 -12.79745 -12.62687 -12.19672 -12.07732 -12.03401 -11.91072 -11.85979 -11.12582 -10.99149 -10.82242 -10.44284 -10.35982 -9.84402 -8.30411 -5.94866 -0.73216 -0.19423 1.13932 1.36222 1.41254 1.44664 1.53678 1.93354 2.20697 2.63858 2.80132 3.03279 3.06296 3.62464 3.70166 3.78550 3.79961 4.18832 4.29253 4.33460 4.41376 4.52005 4.61304 4.70771 4.84443 4.90039 4.98904 5.11074 5.16445 5.32880 5.37023 5.57554 5.93522 6.01632 6.34111 6.43772 6.68536 7.05189 7.31188 7.86423 8.52756 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030953 B = 0.004427 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.394667 B = 6322.961581 C = 6888.997798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.101 3.899 3 N -0.422 5.422 4 C -0.341 4.341 5 H 0.077 0.923 6 C 0.007 3.993 7 N -0.858 5.858 8 Si 0.993 3.007 9 H -0.272 1.272 10 H -0.264 1.264 11 H -0.280 1.280 12 C 0.443 3.557 13 O -0.639 6.639 14 C -0.070 4.070 15 C -0.118 4.118 16 C 0.112 3.888 17 N -0.437 5.437 18 C 0.075 3.925 19 C 0.530 3.470 20 O -0.523 6.523 21 O -0.337 6.337 22 C 0.024 3.976 23 C -0.081 4.081 24 H 0.032 0.968 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.278 0.722 30 H 0.172 0.828 31 H 0.221 0.779 32 H 0.140 0.860 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.335 -8.896 11.189 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 N -0.137 5.137 4 C -0.469 4.469 5 H 0.095 0.905 6 C -0.197 4.197 7 N -0.496 5.496 8 Si 0.816 3.184 9 H -0.197 1.197 10 H -0.189 1.189 11 H -0.205 1.205 12 C 0.233 3.767 13 O -0.530 6.530 14 C -0.081 4.081 15 C -0.139 4.139 16 C -0.048 4.048 17 N -0.149 5.149 18 C -0.060 4.060 19 C 0.374 3.626 20 O -0.412 6.412 21 O -0.252 6.252 22 C -0.068 4.068 23 C -0.102 4.102 24 H 0.051 0.949 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.189 0.811 31 H 0.238 0.762 32 H 0.158 0.842 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.083 -8.773 11.745 14.660 hybrid contribution 0.537 1.402 -1.655 2.234 sum 0.621 -7.371 10.090 12.511 Atomic orbital electron populations 1.22201 0.94564 1.01123 1.02116 1.22229 0.96316 0.81370 1.02155 1.44000 1.51319 1.13123 1.05219 1.19790 1.43742 0.98772 0.84579 0.90525 1.25975 0.94708 0.97120 1.01860 1.70122 1.33913 1.16847 1.28722 0.84935 0.78531 0.78067 0.76828 1.19700 1.18874 1.20515 1.18209 0.87252 0.87230 0.84026 1.90582 1.58480 1.17764 1.86135 1.20367 0.95778 0.96898 0.95064 1.23512 0.98824 0.92981 0.98557 1.23550 0.95667 0.97276 0.88331 1.67592 1.00283 1.15373 1.31646 1.19764 0.94488 0.98432 0.93331 1.20722 0.84421 0.76901 0.80537 1.90846 1.36794 1.38335 1.75193 1.86654 1.46597 1.60483 1.31425 1.23720 0.85628 1.04242 0.93231 1.21926 0.98318 0.97369 0.92619 0.94906 0.90799 0.90398 0.87904 0.92057 0.91056 0.81063 0.76216 0.84218 0.91564 0.91605 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 8.57 71.98 0.62 -4.53 16 2 C 0.10 4.15 4.89 86.38 0.42 4.57 16 3 N -0.42 -21.22 2.64 -638.69 -1.68 -22.91 16 4 C -0.34 -18.61 9.49 84.13 0.80 -17.81 16 5 H 0.08 4.58 7.19 -2.91 -0.02 4.56 16 6 C 0.01 0.33 5.34 84.98 0.45 0.78 16 7 N -0.86 -39.19 7.25 21.69 0.16 -39.03 16 8 Si 0.99 39.76 29.57 68.60 2.03 41.79 16 9 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 10 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 12 C 0.44 22.60 7.28 86.83 0.63 23.23 16 13 O -0.64 -38.22 16.59 -3.92 -0.07 -38.28 16 14 C -0.07 -2.82 5.14 -19.90 -0.10 -2.92 16 15 C -0.12 -3.61 7.51 22.73 0.17 -3.44 16 16 C 0.11 2.72 11.17 84.80 0.95 3.67 16 17 N -0.44 -12.83 10.09 -185.16 -1.87 -14.70 16 18 C 0.07 2.53 6.74 41.86 0.28 2.82 16 19 C 0.53 17.26 7.95 70.43 0.56 17.82 16 20 O -0.52 -19.17 16.11 20.05 0.32 -18.84 16 21 O -0.34 -8.95 10.38 -55.87 -0.58 -9.53 16 22 C 0.02 0.43 10.56 113.37 1.20 1.63 16 23 C -0.08 -3.15 9.33 22.90 0.21 -2.93 16 24 H 0.03 1.13 6.50 -2.39 -0.02 1.11 16 25 H 0.07 3.13 5.88 -2.39 -0.01 3.11 16 26 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.10 4.62 5.74 -2.39 -0.01 4.60 16 28 H 0.06 2.20 4.98 -2.39 -0.01 2.18 16 29 H 0.28 11.79 8.31 -92.70 -0.77 11.02 16 30 H 0.17 4.84 3.84 -2.91 -0.01 4.83 16 31 H 0.22 3.01 8.06 -2.91 -0.02 2.98 16 32 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.13 5.59 7.64 -2.91 -0.02 5.56 16 Total: -1.00 -68.62 298.61 5.64 -62.97 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.14 Total: 15.64 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 6.19 Total: 22.89 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -3.39 Total: -76.64 kcal Atomic # 8 Polarization: -66.33 SS G_CDS: -0.32 Total: -66.65 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -68.62 5.64 -62.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434199247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.639 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds