Wall clock time and date at job start Tue Mar 31 2020 01:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47188 * 2 1 4 4 C 1.46507 * 119.99896 * 275.00225 * 3 2 1 5 5 C 1.50697 * 109.46936 * 274.99391 * 4 3 2 6 6 H 1.08006 * 120.00217 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00251 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99599 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47473 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47136 * 120.00526 * 9 7 5 12 12 H 1.48508 * 109.46826 * 240.00180 * 9 7 5 13 13 S 1.65601 * 120.00284 * 94.99638 * 3 2 1 14 14 O 1.42104 * 106.40162 * 336.46707 * 13 3 2 15 15 O 1.42097 * 106.40701 * 203.54160 * 13 3 2 16 16 N 1.65608 * 107.21642 * 90.00037 * 13 3 2 17 17 C 1.47144 * 120.87061 * 89.99996 * 16 13 3 18 18 C 1.53392 * 108.21145 * 129.40197 * 17 16 13 19 19 C 1.53145 * 108.94502 * 51.83369 * 18 17 16 20 20 O 1.42938 * 109.51106 * 300.93614 * 19 18 17 21 21 C 1.42686 * 114.05074 * 62.32809 * 20 19 18 22 22 H 1.09002 * 109.46761 * 60.00221 * 1 2 3 23 23 H 1.08996 * 109.46644 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47047 * 300.00042 * 1 2 3 25 25 H 1.09003 * 109.47581 * 240.00319 * 2 1 3 26 26 H 1.08999 * 109.47488 * 119.99772 * 2 1 3 27 27 H 1.08999 * 109.47296 * 34.99751 * 4 3 2 28 28 H 1.09004 * 109.46704 * 155.00325 * 4 3 2 29 29 H 0.97002 * 119.99793 * 179.97438 * 8 7 5 30 30 H 1.08994 * 109.71886 * 249.08351 * 17 16 13 31 31 H 1.09004 * 109.71568 * 9.68442 * 17 16 13 32 32 H 1.09001 * 109.55625 * 171.66925 * 18 17 16 33 33 H 1.08995 * 109.56299 * 291.88046 * 18 17 16 34 34 H 1.09005 * 109.46387 * 60.94767 * 19 18 17 35 35 H 1.08994 * 109.46692 * 180.92381 * 19 18 17 36 36 H 1.09000 * 109.54085 * 184.76641 * 21 20 19 37 37 H 1.08998 * 109.43454 * 64.42828 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4948 1.7889 -1.8823 6 1 4.1721 1.1112 -1.3839 7 6 3.8526 2.3606 -3.0849 8 7 3.0276 3.1855 -3.6920 9 14 5.5090 1.9636 -3.8517 10 1 6.2450 1.0158 -2.9771 11 1 5.3014 1.3459 -5.1861 12 1 6.2971 3.2133 -4.0019 13 16 2.4122 2.1203 1.4287 14 8 1.6869 1.4415 2.4448 15 8 2.3057 3.5187 1.1998 16 7 4.0144 1.8137 1.7138 17 6 5.0577 2.7235 1.2146 18 6 5.9908 3.0693 2.3819 19 6 6.4602 1.7709 3.0446 20 8 5.3264 1.0362 3.5114 21 6 4.4316 0.6287 2.4774 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.3617 1.8097 -1.9453 28 1 2.0922 3.1803 -1.0756 29 1 3.2794 3.5880 -4.5379 30 1 5.6248 2.2337 0.4231 31 1 4.5981 3.6334 0.8285 32 1 6.8536 3.6208 2.0082 33 1 5.4550 3.6791 3.1092 34 1 7.0085 1.1702 2.3188 35 1 7.1113 2.0073 3.8861 36 1 3.5567 0.1517 2.9193 37 1 4.9383 -0.0734 1.8152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451533804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:05 Heat of formation + Delta-G solvation = -120.261043 kcal Electronic energy + Delta-G solvation = -21699.669782 eV Core-core repulsion = 18411.021476 eV Total energy + Delta-G solvation = -3288.648306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.05031 -36.77816 -36.05372 -35.25299 -34.27508 -32.75284 -31.93026 -29.96869 -26.66704 -25.49217 -25.05986 -23.16287 -21.71964 -21.05404 -18.56549 -17.41721 -17.00249 -16.43677 -16.37617 -15.59461 -15.18524 -15.04265 -14.66736 -14.36570 -13.82515 -13.64645 -13.32300 -12.93194 -12.88780 -12.11848 -12.04084 -11.81430 -11.72165 -11.59431 -11.38129 -11.17735 -11.10928 -10.99626 -10.98460 -10.76585 -10.54337 -10.44295 -10.10963 -9.82173 -9.73695 -8.87956 -8.54202 -8.09506 -6.15513 -4.22220 1.17949 3.19421 3.27722 3.29240 3.38944 3.88898 4.05803 4.31607 4.80456 4.89532 5.01636 5.16159 5.18545 5.35273 5.36825 5.45375 5.57239 5.60761 5.73852 5.79033 5.87598 6.03068 6.07298 6.26991 6.32710 6.37314 6.59216 6.64365 6.76852 7.12518 7.32203 7.40733 7.61663 7.81572 8.11158 8.82847 9.43813 10.92489 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.009214 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.797010 B = 3038.091050 C = 4176.441500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.991 5.991 4 C 0.244 3.756 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.788 3.212 14 O -0.996 6.996 15 O -0.975 6.975 16 N -1.024 6.024 17 C 0.121 3.879 18 C -0.168 4.168 19 C 0.063 3.937 20 O -0.389 6.389 21 C 0.292 3.708 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.264 0.736 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 -4.970 9.050 11.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.832 5.832 4 C 0.122 3.878 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.797 3.203 14 O -0.980 6.980 15 O -0.959 6.959 16 N -0.869 5.869 17 C -0.004 4.004 18 C -0.207 4.207 19 C -0.014 4.014 20 O -0.304 6.304 21 C 0.128 3.872 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.134 0.866 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.488 -4.411 9.664 11.180 hybrid contribution 1.276 -0.329 -1.234 1.805 sum 4.764 -4.740 8.430 10.781 Atomic orbital electron populations 1.22204 0.96808 1.01452 1.02447 1.20985 0.93785 0.82879 1.02031 1.57786 1.78228 1.22996 1.24236 1.19210 0.97377 0.92221 0.78951 1.21571 1.02205 1.27949 1.06025 0.91959 1.24958 0.97200 0.94864 0.96889 1.69944 1.35867 1.29809 1.17036 0.86539 0.83920 0.78208 0.79291 1.19768 1.20964 1.20856 1.01742 0.72314 0.73485 0.72795 1.93528 1.70336 1.76471 1.57644 1.93561 1.85530 1.30789 1.85988 1.58919 1.25934 1.34862 1.67201 1.21453 0.89537 0.94318 0.95103 1.22514 1.00572 0.98431 0.99222 1.22511 0.87593 0.92018 0.99282 1.87910 1.35257 1.73244 1.33995 1.22446 0.93478 0.85505 0.85738 0.92038 0.92277 0.92611 0.90144 0.92098 0.94313 0.93187 0.92624 0.90660 0.88110 0.89880 0.90743 0.92905 0.88997 0.86573 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.13 2.20 6.06 -4.04 -0.02 2.18 16 3 N -0.99 -20.10 2.83 -115.66 -0.33 -20.43 16 4 C 0.24 5.92 5.44 -5.19 -0.03 5.89 16 5 C -0.54 -13.58 9.38 -34.44 -0.32 -13.90 16 6 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -24.82 13.29 55.43 0.74 -24.09 16 9 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 S 2.79 56.05 6.12 -107.50 -0.66 55.39 16 14 O -1.00 -20.34 15.71 -57.17 -0.90 -21.24 16 15 O -0.97 -22.67 15.30 -57.17 -0.87 -23.55 16 16 N -1.02 -17.76 3.46 -118.56 -0.41 -18.17 16 17 C 0.12 1.99 6.59 -3.49 -0.02 1.97 16 18 C -0.17 -2.20 6.32 -26.45 -0.17 -2.36 16 19 C 0.06 0.76 6.80 37.23 0.25 1.01 16 20 O -0.39 -5.75 10.84 -35.23 -0.38 -6.13 16 21 C 0.29 4.34 7.46 60.13 0.45 4.78 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 26 H 0.06 0.91 7.61 -51.93 -0.40 0.51 16 27 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 28 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.84 6.94 -51.93 -0.36 1.48 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.12 1.67 6.92 -51.93 -0.36 1.31 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -30.90 316.14 -8.32 -39.22 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.67 Total: 0.28 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 0.42 Total: -1.11 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: 0.00 Total: -62.68 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -2.15 Total: -50.92 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 56.05 SS G_CDS: -0.66 Total: 55.39 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.90 -8.32 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451533804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.042 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds