Wall clock time and date at job start Tue Mar 31 2020 01:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47188 * 2 1 4 4 C 1.46507 * 119.99896 * 275.00225 * 3 2 1 5 5 C 1.50697 * 109.46936 * 274.99391 * 4 3 2 6 6 H 1.08006 * 120.00217 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00251 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99599 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47473 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47136 * 120.00526 * 9 7 5 12 12 H 1.48508 * 109.46826 * 240.00180 * 9 7 5 13 13 S 1.65601 * 120.00284 * 94.99638 * 3 2 1 14 14 O 1.42104 * 106.40162 * 336.46707 * 13 3 2 15 15 O 1.42097 * 106.40701 * 203.54160 * 13 3 2 16 16 N 1.65608 * 107.21642 * 90.00037 * 13 3 2 17 17 C 1.47144 * 120.87061 * 89.99996 * 16 13 3 18 18 C 1.53392 * 108.21145 * 129.40197 * 17 16 13 19 19 C 1.53145 * 108.94502 * 51.83369 * 18 17 16 20 20 O 1.42938 * 109.51106 * 300.93614 * 19 18 17 21 21 C 1.42686 * 114.05074 * 62.32809 * 20 19 18 22 22 H 1.09002 * 109.46761 * 60.00221 * 1 2 3 23 23 H 1.08996 * 109.46644 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47047 * 300.00042 * 1 2 3 25 25 H 1.09003 * 109.47581 * 240.00319 * 2 1 3 26 26 H 1.08999 * 109.47488 * 119.99772 * 2 1 3 27 27 H 1.08999 * 109.47296 * 34.99751 * 4 3 2 28 28 H 1.09004 * 109.46704 * 155.00325 * 4 3 2 29 29 H 0.97002 * 119.99793 * 179.97438 * 8 7 5 30 30 H 1.08994 * 109.71886 * 249.08351 * 17 16 13 31 31 H 1.09004 * 109.71568 * 9.68442 * 17 16 13 32 32 H 1.09001 * 109.55625 * 171.66925 * 18 17 16 33 33 H 1.08995 * 109.56299 * 291.88046 * 18 17 16 34 34 H 1.09005 * 109.46387 * 60.94767 * 19 18 17 35 35 H 1.08994 * 109.46692 * 180.92381 * 19 18 17 36 36 H 1.09000 * 109.54085 * 184.76641 * 21 20 19 37 37 H 1.08998 * 109.43454 * 64.42828 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4948 1.7889 -1.8823 6 1 4.1721 1.1112 -1.3839 7 6 3.8526 2.3606 -3.0849 8 7 3.0276 3.1855 -3.6920 9 14 5.5090 1.9636 -3.8517 10 1 6.2450 1.0158 -2.9771 11 1 5.3014 1.3459 -5.1861 12 1 6.2971 3.2133 -4.0019 13 16 2.4122 2.1203 1.4287 14 8 1.6869 1.4415 2.4448 15 8 2.3057 3.5187 1.1998 16 7 4.0144 1.8137 1.7138 17 6 5.0577 2.7235 1.2146 18 6 5.9908 3.0693 2.3819 19 6 6.4602 1.7709 3.0446 20 8 5.3264 1.0362 3.5114 21 6 4.4316 0.6287 2.4774 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.3617 1.8097 -1.9453 28 1 2.0922 3.1803 -1.0756 29 1 3.2794 3.5880 -4.5379 30 1 5.6248 2.2337 0.4231 31 1 4.5981 3.6334 0.8285 32 1 6.8536 3.6208 2.0082 33 1 5.4550 3.6791 3.1092 34 1 7.0085 1.1702 2.3188 35 1 7.1113 2.0073 3.8861 36 1 3.5567 0.1517 2.9193 37 1 4.9383 -0.0734 1.8152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451533804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:03 Heat of formation + Delta-G solvation = -143.508342 kcal Electronic energy + Delta-G solvation = -21700.677861 eV Core-core repulsion = 18411.021476 eV Total energy + Delta-G solvation = -3289.656384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.18220 -38.44616 -37.68562 -36.94460 -35.52772 -34.67955 -33.04717 -31.53698 -28.50327 -26.65234 -26.23753 -24.93088 -23.27537 -22.23248 -20.00298 -18.93791 -18.66502 -18.25647 -17.75215 -17.05972 -16.51256 -16.32108 -16.03971 -15.78511 -15.36895 -14.90509 -14.80590 -14.54359 -14.11274 -13.81173 -13.66682 -13.37936 -13.24115 -13.19968 -13.08124 -12.76458 -12.66326 -12.35447 -12.23162 -12.20462 -12.08594 -11.89115 -11.71840 -11.59211 -10.89695 -10.58053 -10.16248 -9.79051 -8.15469 -6.29272 -0.40341 1.43531 1.45437 1.56224 1.89813 2.42538 2.48976 2.85373 3.16472 3.29459 3.71695 3.93580 3.97740 4.03996 4.29865 4.33839 4.42202 4.46086 4.48242 4.62436 4.69629 4.77902 4.93520 4.97686 5.06708 5.13169 5.21647 5.26753 5.38107 5.44318 5.55446 5.77133 5.96548 6.08177 6.11514 6.83124 7.40987 8.93040 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.009214 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.797010 B = 3038.091050 C = 4176.441500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 N -0.994 5.994 4 C 0.260 3.740 5 C -0.536 4.536 6 H 0.074 0.926 7 C 0.010 3.990 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.255 1.255 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.798 3.202 14 O -1.000 7.000 15 O -1.014 7.014 16 N -1.023 6.023 17 C 0.114 3.886 18 C -0.163 4.163 19 C 0.058 3.942 20 O -0.401 6.401 21 C 0.286 3.714 22 H 0.046 0.954 23 H 0.093 0.907 24 H 0.046 0.954 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.021 0.979 28 H 0.015 0.985 29 H 0.264 0.736 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 -6.785 9.824 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.006 4.006 3 N -0.836 5.836 4 C 0.137 3.863 5 C -0.575 4.575 6 H 0.092 0.908 7 C -0.189 4.189 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.807 3.193 14 O -0.984 6.984 15 O -0.998 6.998 16 N -0.871 5.871 17 C -0.011 4.011 18 C -0.202 4.202 19 C -0.018 4.018 20 O -0.316 6.316 21 C 0.124 3.876 22 H 0.065 0.935 23 H 0.112 0.888 24 H 0.065 0.935 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.563 -6.256 10.467 13.403 hybrid contribution 0.614 0.226 -1.409 1.553 sum 6.177 -6.030 9.059 12.513 Atomic orbital electron populations 1.22198 0.95902 1.03356 1.01278 1.21293 0.94697 0.81152 1.03416 1.57685 1.78989 1.24203 1.22676 1.18740 0.96776 0.90678 0.80125 1.21826 1.02395 1.27420 1.05842 0.90826 1.25826 1.00804 0.94720 0.97589 1.70084 1.38042 1.31270 1.17584 0.85480 0.79541 0.78140 0.78349 1.17884 1.21039 1.20869 1.01227 0.72987 0.72511 0.72546 1.93511 1.71106 1.76267 1.57512 1.93508 1.86438 1.33426 1.86446 1.58728 1.24868 1.36071 1.67421 1.21554 0.89607 0.93114 0.96831 1.22524 1.00578 0.99435 0.97654 1.22766 0.87062 0.91186 1.00767 1.87900 1.35941 1.73543 1.34207 1.22706 0.94190 0.84614 0.86085 0.93452 0.88846 0.93519 0.89863 0.89483 0.96128 0.96712 0.92660 0.90285 0.90934 0.87131 0.91696 0.91326 0.86278 0.86351 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.08 10.24 71.98 0.74 -4.34 16 2 C 0.12 3.91 6.06 86.38 0.52 4.44 16 3 N -0.99 -40.50 2.83 -519.83 -1.47 -41.97 16 4 C 0.26 12.98 5.44 85.63 0.47 13.44 16 5 C -0.54 -27.00 9.38 25.60 0.24 -26.76 16 6 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -53.05 13.29 21.45 0.28 -52.77 16 9 Si 0.96 40.59 29.54 68.60 2.03 42.62 16 10 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 S 2.80 113.06 6.12 -56.49 -0.35 112.72 16 14 O -1.00 -40.25 15.71 -128.00 -2.01 -42.26 16 15 O -1.01 -48.98 15.30 -128.00 -1.96 -50.94 16 16 N -1.02 -34.38 3.46 -629.25 -2.18 -36.56 16 17 C 0.11 3.65 6.59 86.39 0.57 4.22 16 18 C -0.16 -3.89 6.32 30.77 0.19 -3.70 16 19 C 0.06 1.21 6.80 72.03 0.49 1.70 16 20 O -0.40 -10.70 10.84 -148.98 -1.62 -12.32 16 21 C 0.29 7.81 7.46 127.67 0.95 8.76 16 22 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 2.68 8.11 -2.39 -0.02 2.66 16 26 H 0.09 2.39 7.61 -2.39 -0.02 2.37 16 27 H 0.02 1.09 8.11 -2.39 -0.02 1.07 16 28 H 0.01 0.84 6.91 -2.38 -0.02 0.82 16 29 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.07 2.72 6.94 -2.38 -0.02 2.71 16 32 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.12 3.14 6.92 -2.39 -0.02 3.12 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -67.06 316.14 -1.59 -68.64 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 1.05 Total: 14.09 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.63 Total: -1.26 kcal Atomic # 7 Polarization: -127.94 SS G_CDS: -3.36 Total: -131.30 kcal Atomic # 8 Polarization: -99.93 SS G_CDS: -5.58 Total: -105.51 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 16 Polarization: 113.06 SS G_CDS: -0.35 Total: 112.72 kcal Total: -67.06 -1.59 -68.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451533804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.866 kcal (2) G-P(sol) polarization free energy of solvation -67.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds