Wall clock time and date at job start Tue Mar 31 2020 01:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47054 * 2 1 4 4 C 1.46494 * 120.00314 * 86.56292 * 3 2 1 5 5 C 1.54038 * 113.81744 * 293.69260 * 4 3 2 6 6 O 1.44181 * 85.66068 * 136.73749 * 5 4 3 7 7 C 1.44441 * 93.22996 * 335.92450 * 6 5 4 8 8 S 1.65602 * 120.00122 * 266.56553 * 3 2 1 9 9 O 1.42107 * 106.40270 * 23.53772 * 8 3 2 10 10 O 1.42096 * 106.40721 * 156.45668 * 8 3 2 11 11 N 1.65597 * 107.21905 * 270.00159 * 8 3 2 12 12 C 1.46505 * 120.00046 * 89.99635 * 11 8 3 13 13 C 1.46501 * 120.00151 * 269.99652 * 11 8 3 14 14 C 1.50704 * 109.46984 * 94.99463 * 13 11 8 15 15 H 1.08002 * 119.99882 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99921 * 180.02562 * 14 13 11 17 17 N 1.31512 * 120.00128 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99958 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47017 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47083 * 120.00024 * 18 16 14 21 21 H 1.48493 * 109.47202 * 240.00391 * 18 16 14 22 22 H 1.09005 * 109.47050 * 291.02419 * 1 2 3 23 23 H 1.08998 * 109.47546 * 51.02777 * 1 2 3 24 24 H 1.09008 * 109.47088 * 171.03067 * 1 2 3 25 25 H 1.09010 * 109.47190 * 240.00115 * 2 1 3 26 26 H 1.08999 * 109.47296 * 120.00216 * 2 1 3 27 27 H 1.08998 * 113.00075 * 161.86138 * 4 3 2 28 28 H 1.08997 * 113.86554 * 250.94759 * 5 4 3 29 29 H 1.09000 * 113.86002 * 22.52434 * 5 4 3 30 30 H 1.08998 * 113.74957 * 269.92349 * 7 6 5 31 31 H 1.08998 * 114.05796 * 138.26950 * 7 6 5 32 32 H 1.09005 * 109.47076 * 90.00371 * 12 11 8 33 33 H 1.09006 * 109.47003 * 209.99664 * 12 11 8 34 34 H 1.08990 * 109.47440 * 329.99972 * 12 11 8 35 35 H 1.08992 * 109.47595 * 214.99993 * 13 11 8 36 36 H 1.09007 * 109.46552 * 335.00503 * 13 11 8 37 37 H 0.96991 * 120.00317 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1907 2.0972 1.2664 5 6 0.8701 2.3739 2.0094 6 8 1.5812 1.9712 3.1972 7 6 2.5374 1.1821 2.4560 8 16 2.3753 2.1333 -1.4316 9 8 1.6239 1.4637 -2.4349 10 8 2.2748 3.5295 -1.1874 11 7 3.9695 1.8296 -1.7606 12 6 4.3444 0.6466 -2.5393 13 6 5.0052 2.7438 -1.2730 14 6 5.5502 2.2331 0.0360 15 1 5.1641 1.3188 0.4618 16 6 6.5419 2.9332 0.6899 17 7 7.0117 4.0469 0.1717 18 14 7.2179 2.2999 2.3120 19 1 6.5274 1.0368 2.6767 20 1 8.6746 2.0455 2.1756 21 1 6.9897 3.3135 3.3729 22 1 -0.3633 0.3687 0.9593 23 1 -0.3634 0.6463 -0.7989 24 1 -0.3634 -1.0152 -0.1602 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.8370 2.9704 1.1773 28 1 0.5741 3.4229 2.0069 29 1 0.0586 1.7011 1.7317 30 1 2.2356 0.1441 2.3164 31 1 3.5645 1.2843 2.8063 32 1 4.3627 0.9002 -3.5993 33 1 5.3327 0.3062 -2.2301 34 1 3.6168 -0.1467 -2.3681 35 1 5.8114 2.8027 -2.0040 36 1 4.5751 3.7345 -1.1256 37 1 7.7090 4.5396 0.6318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451706283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:26 Heat of formation + Delta-G solvation = -75.863121 kcal Electronic energy + Delta-G solvation = -21882.476284 eV Core-core repulsion = 18595.753216 eV Total energy + Delta-G solvation = -3286.723068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27336 -36.79965 -35.67126 -35.51720 -35.25227 -32.54238 -30.51735 -27.86874 -27.63837 -26.46744 -25.12333 -22.94263 -22.33442 -20.15240 -18.75150 -17.61735 -16.92759 -16.55513 -16.43051 -15.72821 -15.51912 -15.19985 -14.48786 -13.76056 -13.58543 -13.44084 -13.30443 -13.22531 -12.60326 -12.41608 -12.24429 -12.16502 -11.76569 -11.60630 -11.50667 -11.37917 -11.20949 -11.17729 -10.89231 -10.79937 -10.59456 -10.45384 -10.13806 -9.82475 -9.36987 -8.86618 -8.55531 -8.08190 -6.16905 -4.24301 1.17500 3.20208 3.27133 3.29975 3.34740 3.86309 4.03975 4.30718 4.58398 4.80320 4.91355 5.15659 5.16944 5.19481 5.32899 5.35548 5.49494 5.51099 5.65005 5.81146 5.86892 6.02514 6.04809 6.14166 6.20627 6.25631 6.31401 6.48337 6.51323 6.79303 7.28456 7.37522 7.57351 7.79815 8.08861 8.81198 9.42285 10.91060 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.009469 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.189221 B = 2956.443617 C = 3951.681168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.116 3.884 3 N -0.994 5.994 4 C 0.102 3.898 5 C 0.011 3.989 6 O -0.378 6.378 7 C 0.027 3.973 8 S 2.782 3.218 9 O -0.995 6.995 10 O -0.975 6.975 11 N -0.997 5.997 12 C 0.107 3.893 13 C 0.243 3.757 14 C -0.541 4.541 15 H 0.064 0.936 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.281 1.281 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.138 0.862 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.051 0.949 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 -8.277 0.620 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.010 4.010 3 N -0.831 5.831 4 C -0.005 4.005 5 C -0.068 4.068 6 O -0.296 6.296 7 C -0.051 4.051 8 S 2.791 3.209 9 O -0.979 6.979 10 O -0.959 6.959 11 N -0.839 5.839 12 C -0.040 4.040 13 C 0.120 3.880 14 C -0.580 4.580 15 H 0.082 0.918 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.718 3.282 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.207 1.207 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.156 0.844 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.691 -7.557 0.372 12.295 hybrid contribution 0.924 -0.585 1.002 1.483 sum -8.767 -8.143 1.373 12.044 Atomic orbital electron populations 1.22410 0.96237 1.02415 1.02420 1.21244 0.94276 0.82283 1.03153 1.58183 1.79458 1.23149 1.22355 1.24256 0.96850 0.96771 0.82623 1.24826 0.96421 1.01789 0.83765 1.89712 1.45458 1.67031 1.27433 1.24506 0.95344 0.95890 0.89359 1.01971 0.73012 0.73284 0.72627 1.93537 1.70628 1.76750 1.56998 1.93577 1.86442 1.30485 1.85414 1.57671 1.25322 1.35051 1.65860 1.21226 1.01609 0.86558 0.94593 1.19243 0.85864 0.88233 0.94611 1.21572 1.20984 1.09437 1.06018 0.91831 1.24959 0.96315 0.94745 0.97806 1.69934 1.28101 1.15434 1.39085 0.86574 0.78994 0.78989 0.83662 1.19601 1.20938 1.20704 0.92078 0.91815 0.91658 0.90250 0.90188 0.84392 0.88831 0.89438 0.89674 0.88163 0.93737 0.90773 0.93022 0.94409 0.93155 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 9.76 37.15 0.36 -1.62 16 2 C 0.12 1.47 5.75 -4.05 -0.02 1.45 16 3 N -0.99 -15.99 3.08 -113.79 -0.35 -16.34 16 4 C 0.10 1.69 4.29 -66.85 -0.29 1.40 16 5 C 0.01 0.15 8.84 37.61 0.33 0.49 16 6 O -0.38 -6.11 12.47 -35.23 -0.44 -6.55 16 7 C 0.03 0.41 8.62 37.61 0.32 0.73 16 8 S 2.78 53.95 6.01 -107.50 -0.65 53.30 16 9 O -1.00 -19.57 16.13 -57.17 -0.92 -20.49 16 10 O -0.98 -22.05 15.62 -57.17 -0.89 -22.94 16 11 N -1.00 -20.08 3.23 -123.05 -0.40 -20.48 16 12 C 0.11 1.78 10.31 59.85 0.62 2.39 16 13 C 0.24 5.86 5.41 -5.19 -0.03 5.83 16 14 C -0.54 -13.52 9.38 -34.44 -0.32 -13.84 16 15 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 16 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -24.79 13.29 55.43 0.74 -24.05 16 18 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H 0.06 0.63 5.48 -51.93 -0.28 0.35 16 23 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 24 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 25 H 0.08 0.97 7.29 -51.92 -0.38 0.60 16 26 H 0.08 0.88 5.51 -51.93 -0.29 0.59 16 27 H 0.14 2.65 7.62 -51.93 -0.40 2.26 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.09 1.09 4.88 -51.93 -0.25 0.83 16 30 H 0.09 1.07 5.62 -51.93 -0.29 0.78 16 31 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 34 H 0.05 0.73 7.41 -51.93 -0.38 0.35 16 35 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 36 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 312.16 15.07 4.70 4.70 Total: -1.00 -30.63 312.16 -7.48 -38.11 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.13 Total: 1.25 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 0.88 Total: -1.55 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.01 Total: -60.87 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -2.26 Total: -49.98 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 53.95 SS G_CDS: -0.65 Total: 53.30 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.63 -7.48 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451706283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.754 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds