Wall clock time and date at job start Tue Mar 31 2020 01:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47054 * 2 1 4 4 C 1.46494 * 120.00314 * 86.56292 * 3 2 1 5 5 C 1.54038 * 113.81744 * 293.69260 * 4 3 2 6 6 O 1.44181 * 85.66068 * 136.73749 * 5 4 3 7 7 C 1.44441 * 93.22996 * 335.92450 * 6 5 4 8 8 S 1.65602 * 120.00122 * 266.56553 * 3 2 1 9 9 O 1.42107 * 106.40270 * 23.53772 * 8 3 2 10 10 O 1.42096 * 106.40721 * 156.45668 * 8 3 2 11 11 N 1.65597 * 107.21905 * 270.00159 * 8 3 2 12 12 C 1.46505 * 120.00046 * 89.99635 * 11 8 3 13 13 C 1.46501 * 120.00151 * 269.99652 * 11 8 3 14 14 C 1.50704 * 109.46984 * 94.99463 * 13 11 8 15 15 H 1.08002 * 119.99882 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99921 * 180.02562 * 14 13 11 17 17 N 1.31512 * 120.00128 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99958 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47017 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47083 * 120.00024 * 18 16 14 21 21 H 1.48493 * 109.47202 * 240.00391 * 18 16 14 22 22 H 1.09005 * 109.47050 * 291.02419 * 1 2 3 23 23 H 1.08998 * 109.47546 * 51.02777 * 1 2 3 24 24 H 1.09008 * 109.47088 * 171.03067 * 1 2 3 25 25 H 1.09010 * 109.47190 * 240.00115 * 2 1 3 26 26 H 1.08999 * 109.47296 * 120.00216 * 2 1 3 27 27 H 1.08998 * 113.00075 * 161.86138 * 4 3 2 28 28 H 1.08997 * 113.86554 * 250.94759 * 5 4 3 29 29 H 1.09000 * 113.86002 * 22.52434 * 5 4 3 30 30 H 1.08998 * 113.74957 * 269.92349 * 7 6 5 31 31 H 1.08998 * 114.05796 * 138.26950 * 7 6 5 32 32 H 1.09005 * 109.47076 * 90.00371 * 12 11 8 33 33 H 1.09006 * 109.47003 * 209.99664 * 12 11 8 34 34 H 1.08990 * 109.47440 * 329.99972 * 12 11 8 35 35 H 1.08992 * 109.47595 * 214.99993 * 13 11 8 36 36 H 1.09007 * 109.46552 * 335.00503 * 13 11 8 37 37 H 0.96991 * 120.00317 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1907 2.0972 1.2664 5 6 0.8701 2.3739 2.0094 6 8 1.5812 1.9712 3.1972 7 6 2.5374 1.1821 2.4560 8 16 2.3753 2.1333 -1.4316 9 8 1.6239 1.4637 -2.4349 10 8 2.2748 3.5295 -1.1874 11 7 3.9695 1.8296 -1.7606 12 6 4.3444 0.6466 -2.5393 13 6 5.0052 2.7438 -1.2730 14 6 5.5502 2.2331 0.0360 15 1 5.1641 1.3188 0.4618 16 6 6.5419 2.9332 0.6899 17 7 7.0117 4.0469 0.1717 18 14 7.2179 2.2999 2.3120 19 1 6.5274 1.0368 2.6767 20 1 8.6746 2.0455 2.1756 21 1 6.9897 3.3135 3.3729 22 1 -0.3633 0.3687 0.9593 23 1 -0.3634 0.6463 -0.7989 24 1 -0.3634 -1.0152 -0.1602 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 2.8370 2.9704 1.1773 28 1 0.5741 3.4229 2.0069 29 1 0.0586 1.7011 1.7317 30 1 2.2356 0.1441 2.3164 31 1 3.5645 1.2843 2.8063 32 1 4.3627 0.9002 -3.5993 33 1 5.3327 0.3062 -2.2301 34 1 3.6168 -0.1467 -2.3681 35 1 5.8114 2.8027 -2.0040 36 1 4.5751 3.7345 -1.1256 37 1 7.7090 4.5396 0.6318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451706283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:25 Heat of formation + Delta-G solvation = -99.291418 kcal Electronic energy + Delta-G solvation = -21883.492211 eV Core-core repulsion = 18595.753216 eV Total energy + Delta-G solvation = -3287.738995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48236 -38.39593 -37.21700 -36.94608 -36.78598 -34.47899 -31.58495 -29.66411 -28.87102 -27.62654 -26.76700 -24.20082 -23.94997 -21.44046 -20.08831 -19.11829 -18.61663 -18.22530 -17.87698 -16.99585 -16.84606 -16.72754 -16.21058 -15.21526 -14.96892 -14.67678 -14.58836 -14.40923 -13.98895 -13.94514 -13.71648 -13.61024 -13.39368 -13.10450 -13.00788 -12.91847 -12.63661 -12.55469 -12.44395 -12.39729 -12.03049 -11.96088 -11.70206 -11.49526 -10.59868 -10.55357 -10.11091 -9.73680 -8.16925 -6.30665 -0.34869 1.42392 1.44917 1.54683 1.90680 2.41327 2.50507 2.68799 3.15424 3.30591 3.40787 3.75404 3.99040 4.11552 4.13487 4.21076 4.38831 4.42693 4.59671 4.65740 4.70127 4.80488 4.93223 4.97031 5.05979 5.07980 5.14001 5.24688 5.29196 5.41860 5.47118 5.60430 5.75670 5.94435 6.09755 6.82307 7.39894 8.91636 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.009469 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.189221 B = 2956.443617 C = 3951.681168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.103 3.897 3 N -0.986 5.986 4 C 0.088 3.912 5 C 0.019 3.981 6 O -0.393 6.393 7 C 0.035 3.965 8 S 2.792 3.208 9 O -0.997 6.997 10 O -1.015 7.015 11 N -1.005 6.005 12 C 0.098 3.902 13 C 0.257 3.743 14 C -0.534 4.534 15 H 0.077 0.923 16 C 0.011 3.989 17 N -0.930 5.930 18 Si 0.953 3.047 19 H -0.249 1.249 20 H -0.284 1.284 21 H -0.286 1.286 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.018 0.982 36 H 0.016 0.984 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 -11.044 1.770 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.020 4.020 3 N -0.826 5.826 4 C -0.019 4.019 5 C -0.059 4.059 6 O -0.311 6.311 7 C -0.043 4.043 8 S 2.802 3.198 9 O -0.981 6.981 10 O -0.999 6.999 11 N -0.846 5.846 12 C -0.047 4.047 13 C 0.133 3.867 14 C -0.573 4.573 15 H 0.095 0.905 16 C -0.188 4.188 17 N -0.570 5.570 18 Si 0.778 3.222 19 H -0.172 1.172 20 H -0.210 1.210 21 H -0.212 1.212 22 H 0.089 0.911 23 H 0.063 0.937 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.036 0.964 36 H 0.034 0.966 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.787 -10.361 1.497 15.032 hybrid contribution 1.192 0.248 0.587 1.351 sum -9.596 -10.114 2.084 14.096 Atomic orbital electron populations 1.22404 0.94892 1.03756 1.02273 1.21649 0.95476 0.80193 1.04732 1.57913 1.79275 1.24595 1.20840 1.24255 0.98019 0.96433 0.83233 1.24937 0.95968 1.02723 0.82310 1.89700 1.45875 1.67514 1.28060 1.24612 0.94951 0.97089 0.87643 1.01483 0.72658 0.72510 0.73166 1.93525 1.70382 1.76507 1.57704 1.93522 1.86846 1.33455 1.86118 1.57603 1.24672 1.35630 1.66671 1.21476 1.02609 0.85965 0.94694 1.18783 0.85900 0.87735 0.94279 1.21837 1.20199 1.09404 1.05910 0.90474 1.25805 0.96899 0.94891 1.01230 1.70071 1.29056 1.17030 1.40860 0.85581 0.78243 0.79091 0.79309 1.17234 1.20971 1.21216 0.91101 0.93668 0.88996 0.89562 0.87710 0.88085 0.88722 0.86780 0.86383 0.89175 0.92847 0.90657 0.90124 0.96384 0.96618 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 9.76 71.98 0.70 -2.57 16 2 C 0.10 2.26 5.75 86.38 0.50 2.75 16 3 N -0.99 -30.05 3.08 -524.28 -1.61 -31.67 16 4 C 0.09 2.81 4.29 45.69 0.20 3.01 16 5 C 0.02 0.51 8.84 72.28 0.64 1.15 16 6 O -0.39 -11.83 12.47 -148.98 -1.86 -13.69 16 7 C 0.03 0.96 8.62 72.28 0.62 1.58 16 8 S 2.79 107.54 6.01 -56.49 -0.34 107.20 16 9 O -1.00 -37.96 16.13 -128.00 -2.07 -40.03 16 10 O -1.02 -47.42 15.62 -128.00 -2.00 -49.42 16 11 N -1.00 -40.38 3.23 -543.20 -1.75 -42.13 16 12 C 0.10 3.11 10.31 127.77 1.32 4.43 16 13 C 0.26 12.78 5.41 85.63 0.46 13.25 16 14 C -0.53 -26.78 9.38 25.60 0.24 -26.54 16 15 H 0.08 3.58 7.81 -2.91 -0.02 3.56 16 16 C 0.01 0.58 5.46 84.66 0.46 1.05 16 17 N -0.93 -53.40 13.29 21.45 0.28 -53.12 16 18 Si 0.95 40.85 29.54 68.60 2.03 42.88 16 19 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 22 H 0.07 1.18 5.48 -2.38 -0.01 1.16 16 23 H 0.04 1.03 8.06 -2.39 -0.02 1.01 16 24 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.09 1.79 7.29 -2.38 -0.02 1.77 16 26 H 0.10 1.79 5.51 -2.39 -0.01 1.77 16 27 H 0.10 4.00 7.62 -2.39 -0.02 3.98 16 28 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.11 2.46 4.88 -2.39 -0.01 2.44 16 30 H 0.12 2.44 5.62 -2.39 -0.01 2.42 16 31 H 0.09 2.66 8.14 -2.39 -0.02 2.65 16 32 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.07 2.37 8.07 -2.38 -0.02 2.35 16 34 H 0.08 2.07 7.41 -2.39 -0.02 2.06 16 35 H 0.02 0.95 8.11 -2.39 -0.02 0.93 16 36 H 0.02 0.89 6.91 -2.38 -0.02 0.87 16 37 H 0.26 14.40 8.31 -92.72 -0.77 13.63 16 Total: -1.00 -66.97 312.16 -1.11 -68.08 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.07 Total: 13.79 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.14 Total: -1.90 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -3.08 Total: -126.91 kcal Atomic # 8 Polarization: -97.21 SS G_CDS: -5.92 Total: -103.13 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: 107.54 SS G_CDS: -0.34 Total: 107.20 kcal Total: -66.97 -1.11 -68.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451706283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.215 kcal (2) G-P(sol) polarization free energy of solvation -66.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds