Wall clock time and date at job start Tue Mar 31 2020 01:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34677 * 117.00484 * 2 1 4 4 O 1.21529 * 119.99998 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00205 * 179.97438 * 3 2 1 6 6 N 1.40108 * 119.99964 * 0.02562 * 5 3 2 7 7 C 1.29798 * 119.99816 * 179.97438 * 6 5 3 8 8 C 1.50702 * 120.00250 * 359.97438 * 7 6 5 9 9 C 1.47376 * 119.99801 * 179.97438 * 7 6 5 10 10 C 1.39802 * 120.08441 * 359.97438 * 9 7 6 11 11 C 1.37725 * 119.91076 * 180.02562 * 10 9 7 12 12 C 1.39080 * 120.08795 * 0.02562 * 11 10 9 13 13 O 1.35651 * 119.91220 * 179.97438 * 12 11 10 14 14 C 1.34812 * 117.00183 * 5.54989 * 13 12 11 15 15 H 1.07993 * 119.99874 * 354.94132 * 14 13 12 16 16 C 1.38637 * 119.99762 * 174.94546 * 14 13 12 17 17 N 1.31564 * 119.99464 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00258 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46913 * 90.00017 * 18 16 14 20 20 H 1.48504 * 109.46792 * 210.00331 * 18 16 14 21 21 H 1.48495 * 109.47114 * 330.00198 * 18 16 14 22 22 C 1.39073 * 120.17075 * 0.23197 * 12 11 10 23 23 C 1.37722 * 120.09004 * 359.48723 * 22 12 11 24 24 H 1.09002 * 109.47017 * 300.00324 * 1 2 3 25 25 H 1.09002 * 109.46760 * 59.99499 * 1 2 3 26 26 H 1.08994 * 109.47893 * 179.97438 * 1 2 3 27 27 H 0.96996 * 120.00372 * 180.02562 * 5 3 2 28 28 H 1.08993 * 109.46794 * 270.00004 * 8 7 6 29 29 H 1.08999 * 109.46867 * 30.00206 * 8 7 6 30 30 H 1.08997 * 109.47208 * 150.00138 * 8 7 6 31 31 H 1.07996 * 120.04463 * 0.02562 * 10 9 7 32 32 H 1.07995 * 119.95563 * 180.02562 * 11 10 9 33 33 H 0.97006 * 119.99356 * 179.97438 * 17 16 14 34 34 H 1.08005 * 119.95650 * 179.72106 * 22 12 11 35 35 H 1.08000 * 120.04635 * 180.25489 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.1999 0.0000 4 8 1.4017 2.2192 0.0005 5 7 3.4094 1.2704 0.0005 6 7 4.1724 0.0953 0.0005 7 6 5.4686 0.1632 0.0005 8 6 6.1529 1.5059 -0.0001 9 6 6.2712 -1.0728 0.0011 10 6 5.6383 -2.3194 0.0022 11 6 6.3918 -3.4722 0.0032 12 6 7.7806 -3.3974 0.0038 13 8 8.5193 -4.5351 0.0054 14 6 7.8500 -5.6997 -0.1098 15 1 6.7700 -5.7034 -0.1157 16 6 8.5480 -6.8923 -0.2207 17 7 7.8947 -8.0287 -0.3336 18 14 10.4160 -6.8857 -0.2112 19 1 10.9043 -7.0174 1.1849 20 1 10.9191 -8.0242 -1.0212 21 1 10.9094 -5.6103 -0.7900 22 6 8.4139 -2.1592 0.0081 23 6 7.6674 -1.0019 0.0012 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 3.8499 2.1346 0.0009 28 1 6.3178 1.8291 -1.0278 29 1 5.5249 2.2339 0.5135 30 1 7.1108 1.4258 0.5138 31 1 4.5599 -2.3783 0.0022 32 1 5.9037 -4.4355 0.0037 33 1 8.3831 -8.8632 -0.4116 34 1 9.4926 -2.1052 0.0131 35 1 8.1600 -0.0407 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490562015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:42 Heat of formation + Delta-G solvation = -58.094957 kcal Electronic energy + Delta-G solvation = -20309.149205 eV Core-core repulsion = 16887.752672 eV Total energy + Delta-G solvation = -3421.396534 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.56513 -40.94180 -39.29627 -37.91903 -37.37628 -34.58220 -34.00941 -32.03666 -30.34897 -29.26462 -28.39246 -27.30847 -24.05475 -23.52658 -22.77203 -21.22015 -19.73028 -19.35190 -19.05282 -18.41637 -17.68542 -17.27484 -16.69540 -15.83473 -15.75071 -15.66721 -15.53216 -15.26199 -14.99622 -14.44736 -14.39088 -14.20601 -14.05361 -13.27859 -13.12075 -13.06336 -12.83388 -12.68285 -12.54589 -12.39894 -12.07047 -11.91854 -11.84777 -11.42903 -11.04089 -10.96239 -10.25990 -9.84759 -8.81034 -8.50305 -6.23092 -0.06200 0.60724 1.02278 1.20223 1.35724 1.40829 1.55289 1.81924 2.29274 2.38465 2.80968 3.03179 3.18706 3.52219 3.98739 4.12286 4.16414 4.28016 4.33493 4.39276 4.50802 4.64246 4.66447 4.74652 4.80581 4.92756 5.07185 5.19348 5.25355 5.37726 5.54146 5.65386 5.77414 5.80461 5.87251 6.17021 6.50262 6.82986 7.33227 7.53686 8.60673 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028112 B = 0.003389 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.770414 B = 8258.869510 C = 9231.073699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.362 6.362 3 C 0.675 3.325 4 O -0.594 6.594 5 N -0.547 5.547 6 N -0.296 5.296 7 C 0.183 3.817 8 C -0.160 4.160 9 C -0.137 4.137 10 C -0.032 4.032 11 C -0.246 4.246 12 C 0.142 3.858 13 O -0.233 6.233 14 C -0.402 4.402 15 H 0.082 0.918 16 C 0.011 3.989 17 N -0.920 5.920 18 Si 0.973 3.027 19 H -0.265 1.265 20 H -0.271 1.271 21 H -0.256 1.256 22 C -0.192 4.192 23 C -0.022 4.022 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.129 0.871 27 H 0.418 0.582 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.286 0.714 34 H 0.145 0.855 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 19.219 0.540 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.274 6.274 3 C 0.430 3.570 4 O -0.484 6.484 5 N -0.300 5.300 6 N -0.106 5.106 7 C -0.004 4.004 8 C -0.219 4.219 9 C -0.141 4.141 10 C -0.052 4.052 11 C -0.266 4.266 12 C 0.091 3.909 13 O -0.139 6.139 14 C -0.478 4.478 15 H 0.099 0.901 16 C -0.188 4.188 17 N -0.560 5.560 18 Si 0.794 3.206 19 H -0.190 1.190 20 H -0.196 1.196 21 H -0.179 1.179 22 C -0.211 4.211 23 C -0.042 4.042 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.147 0.853 27 H 0.265 0.735 28 H 0.127 0.873 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.162 0.838 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.740 18.626 0.535 19.227 hybrid contribution 0.534 0.036 0.004 0.536 sum -4.206 18.662 0.539 19.137 Atomic orbital electron populations 1.23574 0.72864 1.05638 1.02916 1.86436 1.25585 1.29687 1.85672 1.17712 0.82002 0.82353 0.74965 1.91042 1.63461 1.36005 1.57854 1.45512 1.02395 1.07125 1.74996 1.75177 1.07661 1.07833 1.19917 1.23449 0.89506 0.96132 0.91361 1.21519 1.03392 0.91204 1.05739 1.18056 0.92940 0.89769 1.13312 1.21121 0.99639 0.91113 0.93318 1.21186 0.93820 0.99421 1.12125 1.19932 0.90712 0.87379 0.92922 1.83485 1.36126 1.12730 1.81518 1.20731 0.92843 0.82063 1.52183 0.90062 1.25344 1.05298 0.93043 0.95130 1.69742 1.38793 0.98601 1.48883 0.85181 0.77400 0.78777 0.79195 1.19011 1.19566 1.17936 1.20513 1.01176 0.88738 1.10631 1.21259 0.91090 0.98551 0.93297 0.91471 0.91486 0.85264 0.73513 0.87330 0.90185 0.86727 0.85685 0.87347 0.90470 0.83766 0.80408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.56 113.37 1.20 2.00 16 2 O -0.36 -9.82 10.18 -55.87 -0.57 -10.39 16 3 C 0.68 18.85 8.81 129.79 1.14 19.99 16 4 O -0.59 -18.30 16.97 19.75 0.34 -17.96 16 5 N -0.55 -13.13 6.12 -296.96 -1.82 -14.95 16 6 N -0.30 -7.93 10.17 -42.88 -0.44 -8.36 16 7 C 0.18 4.10 7.10 45.27 0.32 4.42 16 8 C -0.16 -1.88 9.03 71.24 0.64 -1.23 16 9 C -0.14 -3.82 5.87 -20.11 -0.12 -3.94 16 10 C -0.03 -1.12 9.57 22.53 0.22 -0.90 16 11 C -0.25 -10.44 9.15 22.35 0.20 -10.24 16 12 C 0.14 6.10 6.65 22.67 0.15 6.25 16 13 O -0.23 -11.84 8.58 -21.46 -0.18 -12.03 16 14 C -0.40 -22.83 9.94 67.92 0.68 -22.16 16 15 H 0.08 4.89 5.42 -2.91 -0.02 4.88 16 16 C 0.01 0.61 5.49 84.83 0.47 1.08 16 17 N -0.92 -53.77 13.96 21.61 0.30 -53.47 16 18 Si 0.97 43.32 28.62 68.60 1.96 45.28 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 22 C -0.19 -6.16 9.97 22.35 0.22 -5.94 16 23 C -0.02 -0.54 9.35 22.53 0.21 -0.33 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.42 7.48 6.53 -213.32 -1.39 6.09 16 28 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.77 6.35 -2.39 -0.02 0.76 16 30 H 0.11 0.89 6.47 -2.39 -0.02 0.87 16 31 H 0.13 4.32 7.55 -2.91 -0.02 4.29 16 32 H 0.11 5.16 5.62 -2.91 -0.02 5.15 16 33 H 0.29 15.28 8.31 -92.70 -0.77 14.51 16 34 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 35 H 0.18 2.39 6.35 -2.91 -0.02 2.38 16 Total: -1.00 -71.54 310.62 4.68 -66.86 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.25 Total: 16.03 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 5.33 Total: -11.00 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -1.95 Total: -76.79 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -0.42 Total: -40.39 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.96 Total: 45.28 kcal Total: -71.54 4.68 -66.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490562015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.763 kcal (2) G-P(sol) polarization free energy of solvation -71.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds