Wall clock time and date at job start Tue Mar 31 2020 01:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46509 * 109.47119 * 85.64678 * 3 2 1 5 5 C 1.37099 * 119.99769 * 263.73914 * 4 3 2 6 6 H 1.07998 * 119.99497 * 193.95793 * 5 4 3 7 7 C 1.38942 * 120.00433 * 13.96039 * 5 4 3 8 8 N 1.31415 * 120.00122 * 11.31255 * 7 5 4 9 9 Si 1.86794 * 120.00330 * 191.31174 * 7 5 4 10 10 H 1.48506 * 109.46883 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47419 * 119.99508 * 9 7 5 12 12 H 1.48494 * 109.47733 * 240.00110 * 9 7 5 13 13 C 1.34775 * 119.99770 * 83.73481 * 4 3 2 14 14 O 1.21294 * 120.00235 * 3.72756 * 13 4 3 15 15 C 1.50698 * 119.99670 * 183.44487 * 13 4 3 16 16 H 1.09001 * 109.47335 * 309.48486 * 15 13 4 17 17 C 1.53000 * 109.47237 * 69.48623 * 15 13 4 18 18 N 1.46502 * 109.47053 * 189.48780 * 15 13 4 19 19 C 1.33882 * 122.76121 * 299.70909 * 18 15 13 20 20 O 1.21231 * 125.39684 * 359.97438 * 19 18 15 21 21 C 1.51308 * 109.20730 * 179.84259 * 19 18 15 22 22 C 1.54228 * 103.55795 * 0.38607 * 21 19 18 23 23 C 1.33872 * 122.76752 * 120.00119 * 18 15 13 24 24 O 1.21230 * 125.39618 * 0.02562 * 23 18 15 25 25 H 4.40646 * 5.51474 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.46959 * 325.65094 * 3 2 1 27 27 H 1.08990 * 109.47159 * 205.64336 * 3 2 1 28 28 H 0.96997 * 120.00333 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47149 * 184.25578 * 17 15 13 30 30 H 1.08991 * 109.47019 * 304.25644 * 17 15 13 31 31 H 1.09007 * 109.46928 * 64.25279 * 17 15 13 32 32 H 1.08998 * 110.80064 * 241.77692 * 21 19 18 33 33 H 1.08999 * 110.54840 * 118.87675 * 21 19 18 34 34 H 1.08997 * 110.60569 * 241.25811 * 22 21 19 35 35 H 1.08995 * 110.73769 * 118.35713 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1040 -1.3773 5 6 3.4855 -1.3264 -1.8891 6 1 4.0504 -1.3852 -2.8077 7 6 3.1146 -2.4898 -1.2260 8 7 2.2468 -2.4362 -0.2406 9 14 3.8492 -4.1299 -1.7353 10 1 4.7931 -3.9208 -2.8627 11 1 4.5756 -4.7256 -0.5851 12 1 2.7630 -5.0474 -2.1636 13 6 3.2384 1.0015 -2.1412 14 8 2.9924 2.0910 -1.6681 15 6 3.6665 0.8846 -3.5813 16 1 4.5768 0.2882 -3.6426 17 6 2.5578 0.2076 -4.3896 18 7 3.9209 2.2210 -4.1252 19 6 2.9788 3.1704 -4.1845 20 8 1.8330 3.0473 -3.8079 21 6 3.5715 4.4225 -4.7929 22 6 5.0323 4.0249 -5.0873 23 6 5.1128 2.5916 -4.6089 24 8 6.1002 1.8899 -4.6567 25 1 -1.0500 0.0002 -0.0001 26 1 3.0097 -0.8476 0.5798 27 1 3.0089 0.9272 0.4447 28 1 1.9881 -3.2483 0.2226 29 1 2.8968 0.0547 -5.4143 30 1 2.3161 -0.7551 -3.9394 31 1 1.6706 0.8410 -4.3910 32 1 3.5346 5.2513 -4.0860 33 1 3.0517 4.6829 -5.7149 34 1 5.7220 4.6558 -4.5266 35 1 5.2410 4.0851 -6.1554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490973607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:14 Heat of formation + Delta-G solvation = -20.012934 kcal Electronic energy + Delta-G solvation = -22441.282948 eV Core-core repulsion = 19021.537775 eV Total energy + Delta-G solvation = -3419.745173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.63110 -38.69505 -38.10490 -35.49950 -35.14530 -33.81633 -31.92581 -31.46241 -29.80731 -26.54418 -25.95197 -25.00023 -23.48789 -22.04504 -20.13111 -18.85926 -17.90440 -17.03502 -16.79679 -16.40296 -15.97538 -15.58554 -14.59163 -14.38623 -14.19640 -13.97014 -13.86126 -13.66048 -13.61672 -13.05266 -12.77328 -12.60247 -12.02593 -11.91911 -11.64064 -11.37735 -11.28050 -11.18816 -11.06423 -10.61786 -10.45913 -10.15691 -9.67313 -9.52019 -9.47691 -9.32286 -8.71569 -8.35662 -7.98514 -6.41353 -4.05188 1.86757 2.79582 3.04041 3.11870 3.16449 3.19631 3.62020 3.90726 4.08906 4.23921 4.27655 4.40834 4.57329 4.82974 4.92543 4.94387 5.42125 5.59259 5.59740 5.61633 5.66345 5.68727 5.76611 5.94081 6.22732 6.44150 6.68105 6.74846 7.05282 7.21278 7.24745 7.27704 7.57952 7.68809 8.16449 8.26203 8.92183 8.97279 9.32104 9.72446 10.53849 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020288 B = 0.006874 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.798096 B = 4072.141793 C = 4939.496653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.098 4.098 3 C 0.233 3.767 4 N -0.433 5.433 5 C -0.339 4.339 6 H 0.103 0.897 7 C 0.036 3.964 8 N -0.860 5.860 9 Si 0.924 3.076 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.455 3.545 14 O -0.586 6.586 15 C 0.126 3.874 16 H 0.118 0.882 17 C -0.158 4.158 18 N -0.555 5.555 19 C 0.529 3.471 20 O -0.457 6.457 21 C -0.156 4.156 22 C -0.154 4.154 23 C 0.526 3.474 24 O -0.494 6.494 25 H 0.198 0.802 26 H 0.132 0.868 27 H 0.060 0.940 28 H 0.271 0.729 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.369 7.438 -8.099 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.099 4.099 3 C 0.111 3.889 4 N -0.151 5.151 5 C -0.466 4.466 6 H 0.120 0.880 7 C -0.169 4.169 8 N -0.498 5.498 9 Si 0.751 3.249 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.206 1.206 13 C 0.242 3.758 14 O -0.471 6.471 15 C 0.021 3.979 16 H 0.136 0.864 17 C -0.216 4.216 18 N -0.298 5.298 19 C 0.317 3.683 20 O -0.326 6.326 21 C -0.196 4.196 22 C -0.194 4.194 23 C 0.315 3.685 24 O -0.367 6.367 25 H 0.215 0.785 26 H 0.149 0.851 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.062 7.335 -7.508 10.934 hybrid contribution 0.012 -1.115 -0.159 1.126 sum 3.074 6.220 -7.667 10.340 Atomic orbital electron populations 1.24237 0.95386 1.07582 1.02515 1.23281 0.94428 0.94339 0.97895 1.18453 0.84006 1.01649 0.84746 1.43618 1.55236 1.06112 1.10148 1.19757 1.34143 0.82012 1.10690 0.87951 1.25296 0.95335 0.99821 0.96429 1.70048 1.28560 1.29082 1.22065 0.85894 0.78886 0.81323 0.78835 1.19109 1.20382 1.20621 1.19903 0.83835 0.85056 0.87029 1.90567 1.56029 1.26933 1.73580 1.21084 1.01997 0.81181 0.93596 0.86448 1.22046 0.97804 1.03183 0.98529 1.46548 1.13118 1.15152 1.54949 1.20507 0.85287 0.85261 0.77271 1.90757 1.17061 1.81407 1.43343 1.22436 0.95269 0.97938 1.03988 1.22420 0.98146 0.93973 1.04849 1.20761 0.81870 0.89992 0.75923 1.90748 1.32774 1.59501 1.53678 0.78499 0.85125 0.92193 0.91814 0.92704 0.88238 0.91303 0.86554 0.86820 0.86539 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.54 19.25 29.55 0.57 -5.97 16 2 C -0.10 -2.49 11.96 -37.12 -0.44 -2.94 16 3 C 0.23 5.84 5.09 -6.83 -0.03 5.80 16 4 N -0.43 -10.93 2.61 -117.94 -0.31 -11.24 16 5 C -0.34 -8.28 7.76 -14.94 -0.12 -8.40 16 6 H 0.10 2.36 5.83 -52.49 -0.31 2.05 16 7 C 0.04 0.87 5.17 -17.47 -0.09 0.78 16 8 N -0.86 -21.70 8.91 55.50 0.49 -21.21 16 9 Si 0.92 18.91 29.57 -169.99 -5.03 13.88 16 10 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.45 11.22 6.65 -10.99 -0.07 11.15 16 14 O -0.59 -15.73 14.05 -14.17 -0.20 -15.93 16 15 C 0.13 2.61 2.28 -69.08 -0.16 2.46 16 16 H 0.12 2.43 6.33 -51.93 -0.33 2.10 16 17 C -0.16 -3.03 8.97 37.16 0.33 -2.69 16 18 N -0.56 -10.01 2.34 -109.49 -0.26 -10.27 16 19 C 0.53 9.16 6.67 -11.09 -0.07 9.08 16 20 O -0.46 -9.85 14.79 -14.11 -0.21 -10.06 16 21 C -0.16 -1.63 7.03 -26.94 -0.19 -1.82 16 22 C -0.15 -1.48 7.03 -26.94 -0.19 -1.67 16 23 C 0.53 8.21 8.08 -11.09 -0.09 8.12 16 24 O -0.49 -9.12 17.23 5.60 0.10 -9.02 16 25 H 0.20 3.80 7.80 -54.09 -0.42 3.38 16 26 H 0.13 3.30 5.77 -51.93 -0.30 3.00 16 27 H 0.06 1.47 7.57 -51.93 -0.39 1.07 16 28 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 2.05 6.31 -51.93 -0.33 1.72 16 31 H 0.07 1.41 6.50 -51.92 -0.34 1.07 16 32 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 301.89 15.07 4.55 4.55 Total: -1.00 -33.00 301.89 -5.07 -38.07 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.66 Total: 7.31 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -0.56 Total: 13.91 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.07 Total: -42.71 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.31 Total: -35.01 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.00 -5.07 -38.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490973607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.060 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds