Wall clock time and date at job start Tue Mar 31 2020 01:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46509 * 109.47119 * 85.64678 * 3 2 1 5 5 C 1.37099 * 119.99769 * 263.73914 * 4 3 2 6 6 H 1.07998 * 119.99497 * 193.95793 * 5 4 3 7 7 C 1.38942 * 120.00433 * 13.96039 * 5 4 3 8 8 N 1.31415 * 120.00122 * 11.31255 * 7 5 4 9 9 Si 1.86794 * 120.00330 * 191.31174 * 7 5 4 10 10 H 1.48506 * 109.46883 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47419 * 119.99508 * 9 7 5 12 12 H 1.48494 * 109.47733 * 240.00110 * 9 7 5 13 13 C 1.34775 * 119.99770 * 83.73481 * 4 3 2 14 14 O 1.21294 * 120.00235 * 3.72756 * 13 4 3 15 15 C 1.50698 * 119.99670 * 183.44487 * 13 4 3 16 16 H 1.09001 * 109.47335 * 309.48486 * 15 13 4 17 17 C 1.53000 * 109.47237 * 69.48623 * 15 13 4 18 18 N 1.46502 * 109.47053 * 189.48780 * 15 13 4 19 19 C 1.33882 * 122.76121 * 299.70909 * 18 15 13 20 20 O 1.21231 * 125.39684 * 359.97438 * 19 18 15 21 21 C 1.51308 * 109.20730 * 179.84259 * 19 18 15 22 22 C 1.54228 * 103.55795 * 0.38607 * 21 19 18 23 23 C 1.33872 * 122.76752 * 120.00119 * 18 15 13 24 24 O 1.21230 * 125.39618 * 0.02562 * 23 18 15 25 25 H 4.40646 * 5.51474 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.46959 * 325.65094 * 3 2 1 27 27 H 1.08990 * 109.47159 * 205.64336 * 3 2 1 28 28 H 0.96997 * 120.00333 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47149 * 184.25578 * 17 15 13 30 30 H 1.08991 * 109.47019 * 304.25644 * 17 15 13 31 31 H 1.09007 * 109.46928 * 64.25279 * 17 15 13 32 32 H 1.08998 * 110.80064 * 241.77692 * 21 19 18 33 33 H 1.08999 * 110.54840 * 118.87675 * 21 19 18 34 34 H 1.08997 * 110.60569 * 241.25811 * 22 21 19 35 35 H 1.08995 * 110.73769 * 118.35713 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1040 -1.3773 5 6 3.4855 -1.3264 -1.8891 6 1 4.0504 -1.3852 -2.8077 7 6 3.1146 -2.4898 -1.2260 8 7 2.2468 -2.4362 -0.2406 9 14 3.8492 -4.1299 -1.7353 10 1 4.7931 -3.9208 -2.8627 11 1 4.5756 -4.7256 -0.5851 12 1 2.7630 -5.0474 -2.1636 13 6 3.2384 1.0015 -2.1412 14 8 2.9924 2.0910 -1.6681 15 6 3.6665 0.8846 -3.5813 16 1 4.5768 0.2882 -3.6426 17 6 2.5578 0.2076 -4.3896 18 7 3.9209 2.2210 -4.1252 19 6 2.9788 3.1704 -4.1845 20 8 1.8330 3.0473 -3.8079 21 6 3.5715 4.4225 -4.7929 22 6 5.0323 4.0249 -5.0873 23 6 5.1128 2.5916 -4.6089 24 8 6.1002 1.8899 -4.6567 25 1 -1.0500 0.0002 -0.0001 26 1 3.0097 -0.8476 0.5798 27 1 3.0089 0.9272 0.4447 28 1 1.9881 -3.2483 0.2226 29 1 2.8968 0.0547 -5.4143 30 1 2.3161 -0.7551 -3.9394 31 1 1.6706 0.8410 -4.3910 32 1 3.5346 5.2513 -4.0860 33 1 3.0517 4.6829 -5.7149 34 1 5.7220 4.6558 -4.5266 35 1 5.2410 4.0851 -6.1554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490973607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:13 Heat of formation + Delta-G solvation = -41.283082 kcal Electronic energy + Delta-G solvation = -22442.205290 eV Core-core repulsion = 19021.537775 eV Total energy + Delta-G solvation = -3420.667516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.93332 -40.50280 -39.48007 -37.17956 -36.74750 -35.20912 -33.82414 -33.27964 -31.20269 -28.44214 -27.00303 -26.86591 -25.09576 -23.20424 -21.73925 -20.55498 -19.54117 -18.69289 -18.35399 -17.71347 -17.59361 -17.04585 -16.28133 -16.07110 -16.01932 -15.49971 -15.15622 -14.92880 -14.83419 -14.69957 -14.26698 -13.96263 -13.85028 -13.47069 -13.21413 -13.04793 -12.87070 -12.75239 -12.49819 -12.07751 -12.03453 -11.45893 -11.35657 -11.31241 -11.10741 -10.88120 -10.66264 -10.20114 -9.92477 -8.28342 -5.98895 0.64522 1.37214 1.44948 1.50432 1.60309 1.76899 1.89270 2.08209 2.29081 2.34122 3.01014 3.06164 3.32238 3.38455 3.72534 3.83614 3.99061 4.02630 4.10220 4.24591 4.31940 4.62712 4.75181 4.77477 4.84992 4.94648 4.96876 5.07676 5.13438 5.34768 5.35129 5.67411 5.99620 6.32107 6.48340 6.88563 7.01453 7.05008 7.41306 7.81706 8.67413 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020288 B = 0.006874 C = 0.005667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.798096 B = 4072.141793 C = 4939.496653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.146 4.146 3 C 0.235 3.765 4 N -0.442 5.442 5 C -0.354 4.354 6 H 0.112 0.888 7 C -0.002 4.002 8 N -0.884 5.884 9 Si 0.992 3.008 10 H -0.257 1.257 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.441 3.559 14 O -0.617 6.617 15 C 0.128 3.872 16 H 0.113 0.887 17 C -0.143 4.143 18 N -0.567 5.567 19 C 0.513 3.487 20 O -0.513 6.513 21 C -0.138 4.138 22 C -0.132 4.132 23 C 0.515 3.485 24 O -0.530 6.530 25 H 0.236 0.764 26 H 0.124 0.876 27 H 0.052 0.948 28 H 0.272 0.728 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 8.298 -10.197 13.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.148 4.148 3 C 0.113 3.887 4 N -0.160 5.160 5 C -0.481 4.481 6 H 0.130 0.870 7 C -0.205 4.205 8 N -0.522 5.522 9 Si 0.816 3.184 10 H -0.181 1.181 11 H -0.202 1.202 12 H -0.207 1.207 13 C 0.229 3.771 14 O -0.504 6.504 15 C 0.023 3.977 16 H 0.131 0.869 17 C -0.201 4.201 18 N -0.310 5.310 19 C 0.305 3.695 20 O -0.386 6.386 21 C -0.177 4.177 22 C -0.171 4.171 23 C 0.308 3.692 24 O -0.405 6.405 25 H 0.253 0.747 26 H 0.141 0.859 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.797 8.220 -9.625 13.215 hybrid contribution -0.250 -1.373 0.545 1.498 sum 3.547 6.847 -9.081 11.913 Atomic orbital electron populations 1.25185 0.96435 1.05655 1.00677 1.23652 0.95255 0.96144 0.99700 1.18330 0.84470 1.00796 0.85092 1.43852 1.55077 1.06782 1.10255 1.20081 1.34682 0.82027 1.11315 0.87037 1.26129 0.95316 1.02797 0.96244 1.70165 1.29316 1.29873 1.22821 0.84869 0.78050 0.76858 0.78642 1.18076 1.20216 1.20689 1.20625 0.83448 0.84449 0.88562 1.90517 1.57386 1.27885 1.74590 1.20848 1.01840 0.83666 0.91386 0.86914 1.21901 0.96785 1.01537 0.99925 1.46883 1.14721 1.14281 1.55068 1.21828 0.84500 0.87020 0.76185 1.90722 1.19380 1.82565 1.45905 1.22570 0.95315 0.94349 1.05439 1.22578 0.97965 0.89023 1.07509 1.21927 0.80312 0.92253 0.74734 1.90727 1.33611 1.61111 1.55040 0.74701 0.85852 0.92989 0.91778 0.89453 0.90046 0.92989 0.84703 0.82909 0.83866 0.82371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.27 19.25 74.32 1.43 -10.84 16 2 C -0.15 -7.65 11.96 31.12 0.37 -7.28 16 3 C 0.24 12.33 5.09 84.57 0.43 12.76 16 4 N -0.44 -23.17 2.61 -645.42 -1.68 -24.85 16 5 C -0.35 -17.71 7.76 84.04 0.65 -17.06 16 6 H 0.11 5.22 5.83 -2.91 -0.02 5.21 16 7 C 0.00 -0.12 5.17 84.92 0.44 0.32 16 8 N -0.88 -45.41 8.91 21.66 0.19 -45.22 16 9 Si 0.99 38.74 29.57 68.60 2.03 40.77 16 10 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 11 H -0.28 -10.68 7.11 99.48 0.71 -9.98 16 12 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.44 22.56 6.65 87.66 0.58 23.14 16 14 O -0.62 -34.41 14.05 15.77 0.22 -34.19 16 15 C 0.13 5.43 2.28 44.24 0.10 5.53 16 16 H 0.11 4.78 6.33 -2.39 -0.02 4.77 16 17 C -0.14 -5.58 8.97 71.98 0.65 -4.94 16 18 N -0.57 -20.13 2.34 -738.13 -1.73 -21.85 16 19 C 0.51 17.27 6.67 87.99 0.59 17.86 16 20 O -0.51 -22.48 14.79 15.97 0.24 -22.24 16 21 C -0.14 -2.30 7.03 30.46 0.21 -2.09 16 22 C -0.13 -1.90 7.03 30.46 0.21 -1.69 16 23 C 0.52 15.12 8.08 87.99 0.71 15.83 16 24 O -0.53 -19.01 17.23 -2.88 -0.05 -19.06 16 25 H 0.24 8.66 7.80 -4.42 -0.03 8.63 16 26 H 0.12 6.54 5.77 -2.39 -0.01 6.53 16 27 H 0.05 2.71 7.57 -2.39 -0.02 2.69 16 28 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 29 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.08 3.43 6.31 -2.39 -0.02 3.42 16 31 H 0.05 2.18 6.50 -2.38 -0.02 2.17 16 32 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.16 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -76.48 301.89 6.73 -69.75 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 1.12 Total: 25.35 kcal Atomic # 6 Polarization: 25.17 SS G_CDS: 6.38 Total: 31.55 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -3.21 Total: -91.92 kcal Atomic # 8 Polarization: -75.90 SS G_CDS: 0.41 Total: -75.49 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -76.48 6.73 -69.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490973607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.468 kcal (2) G-P(sol) polarization free energy of solvation -76.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds