Wall clock time and date at job start Tue Mar 31 2020 01:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47015 * 166.92519 * 3 2 1 5 5 C 1.37099 * 120.00076 * 271.55181 * 4 3 2 6 6 H 1.08001 * 119.99937 * 175.10995 * 5 4 3 7 7 C 1.38950 * 119.99993 * 355.10374 * 5 4 3 8 8 N 1.31408 * 119.99953 * 33.63867 * 7 5 4 9 9 Si 1.86803 * 119.99962 * 213.64193 * 7 5 4 10 10 H 1.48496 * 109.47166 * 94.99555 * 9 7 5 11 11 H 1.48497 * 109.47193 * 215.00059 * 9 7 5 12 12 H 1.48499 * 109.46811 * 334.99837 * 9 7 5 13 13 C 1.34775 * 120.00066 * 91.54533 * 4 3 2 14 14 O 1.21290 * 120.00246 * 185.39110 * 13 4 3 15 15 C 1.50702 * 119.99754 * 5.39254 * 13 4 3 16 16 H 1.09007 * 109.47253 * 41.99136 * 15 13 4 17 17 C 1.52997 * 109.47547 * 281.99319 * 15 13 4 18 18 N 1.46495 * 109.47256 * 161.98932 * 15 13 4 19 19 C 1.33882 * 122.76291 * 240.00260 * 18 15 13 20 20 O 1.21218 * 125.39719 * 359.97438 * 19 18 15 21 21 C 1.51317 * 109.20284 * 179.97438 * 19 18 15 22 22 C 1.54228 * 103.69680 * 359.92307 * 21 19 18 23 23 C 1.33878 * 122.76155 * 60.00375 * 18 15 13 24 24 O 1.21228 * 125.39643 * 0.02562 * 23 18 15 25 25 H 4.40643 * 5.51424 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.46933 * 46.93085 * 3 2 1 27 27 H 1.08992 * 109.46983 * 286.92730 * 3 2 1 28 28 H 0.97003 * 119.99406 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46513 * 300.95390 * 17 15 13 30 30 H 1.08999 * 109.47247 * 60.94546 * 17 15 13 31 31 H 1.08998 * 109.47690 * 180.95509 * 17 15 13 32 32 H 1.09001 * 110.60360 * 118.52151 * 21 19 18 33 33 H 1.08998 * 110.60467 * 241.32155 * 21 19 18 34 34 H 1.09004 * 110.60457 * 118.59187 * 22 21 19 35 35 H 1.08996 * 110.60453 * 241.55942 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3463 -0.3125 5 6 3.3317 1.7179 -1.6172 6 1 3.6151 2.7332 -1.8525 7 6 3.1680 0.7883 -2.6368 8 7 2.2598 -0.1550 -2.5263 9 14 4.2389 0.8794 -4.1647 10 1 5.4046 -0.0269 -4.0068 11 1 3.4465 0.4647 -5.3501 12 1 4.7170 2.2728 -4.3516 13 6 3.3876 2.2190 0.6827 14 8 3.6971 3.3625 0.4223 15 6 3.2870 1.7741 2.1190 16 1 3.7302 0.7838 2.2245 17 6 1.8156 1.7211 2.5347 18 7 4.0026 2.7230 2.9755 19 6 5.0364 2.3653 3.7473 20 8 5.4954 1.2466 3.8320 21 6 5.5411 3.5789 4.4971 22 6 4.6129 4.7147 4.0204 23 6 3.6765 4.0193 3.0509 24 8 2.7763 4.5536 2.4395 25 1 -1.0502 -0.0004 0.0003 26 1 3.0096 -0.7010 -0.7507 27 1 3.0094 -0.2984 0.9831 28 1 2.1458 -0.8042 -3.2380 29 1 1.3680 2.7075 2.4132 30 1 1.2867 1.0026 1.9085 31 1 1.7436 1.4156 3.5786 32 1 5.4462 3.4319 5.5730 33 1 6.5762 3.7917 4.2301 34 1 4.0562 5.1327 4.8592 35 1 5.1860 5.4912 3.5139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490973608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:17 Heat of formation + Delta-G solvation = -13.416664 kcal Electronic energy + Delta-G solvation = -22417.737938 eV Core-core repulsion = 18998.278800 eV Total energy + Delta-G solvation = -3419.459137 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68421 -38.72306 -38.14479 -35.53026 -35.21345 -33.91543 -32.23923 -31.35265 -29.90825 -26.60726 -25.97492 -25.18725 -23.59729 -22.10423 -20.37520 -18.49502 -18.00630 -16.97754 -16.81606 -16.51491 -16.25980 -15.60976 -14.78769 -14.47691 -14.34823 -13.94453 -13.88892 -13.68288 -13.61113 -13.04554 -12.87887 -12.71167 -12.49492 -11.89112 -11.73827 -11.50795 -11.36014 -11.27246 -11.01494 -10.54973 -10.34256 -10.23312 -9.73087 -9.58230 -9.48578 -9.21953 -8.83052 -8.32500 -8.05119 -6.50826 -3.80497 1.82357 2.70605 3.06960 3.10910 3.25250 3.30784 3.53699 3.82240 3.92219 4.11281 4.20659 4.36064 4.53263 4.75453 4.87723 4.90916 5.31950 5.38046 5.40517 5.41422 5.57408 5.58829 5.63799 5.67793 5.98492 6.17707 6.22971 6.49269 6.79548 6.94927 7.18839 7.50390 7.62517 7.93167 8.14594 8.36922 8.66346 9.06094 9.28468 9.81849 10.51961 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.006252 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.622347 B = 4477.837856 C = 4908.472754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.118 4.118 3 C 0.211 3.789 4 N -0.432 5.432 5 C -0.321 4.321 6 H 0.110 0.890 7 C 0.040 3.960 8 N -0.847 5.847 9 Si 0.911 3.089 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.437 3.563 14 O -0.564 6.564 15 C 0.116 3.884 16 H 0.112 0.888 17 C -0.167 4.167 18 N -0.554 5.554 19 C 0.526 3.474 20 O -0.495 6.495 21 C -0.154 4.154 22 C -0.155 4.155 23 C 0.526 3.474 24 O -0.450 6.450 25 H 0.202 0.798 26 H 0.128 0.872 27 H 0.063 0.937 28 H 0.270 0.730 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 1.940 13.042 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.119 4.119 3 C 0.088 3.912 4 N -0.151 5.151 5 C -0.447 4.447 6 H 0.128 0.872 7 C -0.166 4.166 8 N -0.485 5.485 9 Si 0.737 3.263 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.224 3.776 14 O -0.447 6.447 15 C 0.010 3.990 16 H 0.130 0.870 17 C -0.224 4.224 18 N -0.297 5.297 19 C 0.315 3.685 20 O -0.368 6.368 21 C -0.194 4.194 22 C -0.195 4.195 23 C 0.314 3.686 24 O -0.318 6.318 25 H 0.219 0.781 26 H 0.145 0.855 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.679 2.049 12.452 12.900 hybrid contribution 0.068 -0.244 -0.986 1.018 sum 2.747 1.805 11.466 11.928 Atomic orbital electron populations 1.24384 0.95456 1.01988 1.05509 1.23209 0.94392 0.98511 0.95818 1.18839 0.84335 0.87737 1.00302 1.43753 1.55241 1.10175 1.05909 1.19680 1.45681 0.98853 0.80485 0.87200 1.25204 0.95780 0.96195 0.99378 1.70257 1.25979 1.17694 1.34528 0.86152 0.80535 0.79151 0.80430 1.20204 1.21130 1.19233 1.19649 0.86038 0.86347 0.85536 1.90564 1.52974 1.17921 1.83193 1.21217 0.94354 0.92941 0.90450 0.87013 1.22249 0.93614 1.05014 1.01567 1.46493 1.31400 1.11874 1.39964 1.20779 0.78554 0.90305 0.78834 1.90740 1.58928 1.23070 1.64062 1.22422 1.02219 0.92346 1.02418 1.22506 0.97830 0.99067 1.00097 1.20625 0.84722 0.81371 0.81916 1.90766 1.29883 1.68218 1.42893 0.78064 0.85474 0.91900 0.91944 0.90639 0.89168 0.92283 0.86567 0.86451 0.86759 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.15 18.83 29.55 0.56 -4.59 16 2 C -0.12 -2.61 9.78 -37.12 -0.36 -2.97 16 3 C 0.21 4.71 4.78 -6.83 -0.03 4.68 16 4 N -0.43 -11.04 2.59 -117.93 -0.30 -11.34 16 5 C -0.32 -8.91 9.39 -14.93 -0.14 -9.05 16 6 H 0.11 3.27 7.36 -52.49 -0.39 2.89 16 7 C 0.04 1.03 4.90 -17.47 -0.09 0.94 16 8 N -0.85 -21.79 9.56 55.50 0.53 -21.26 16 9 Si 0.91 20.36 29.66 -169.99 -5.04 15.32 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.44 10.84 6.75 -10.98 -0.07 10.77 16 14 O -0.56 -15.76 13.63 -16.12 -0.22 -15.98 16 15 C 0.12 2.29 2.29 -69.09 -0.16 2.13 16 16 H 0.11 2.10 5.87 -51.92 -0.30 1.79 16 17 C -0.17 -2.98 9.00 37.16 0.33 -2.65 16 18 N -0.55 -9.67 2.40 -109.34 -0.26 -9.94 16 19 C 0.53 7.89 8.08 -11.08 -0.09 7.80 16 20 O -0.49 -8.73 17.23 5.61 0.10 -8.63 16 21 C -0.15 -1.41 7.02 -26.94 -0.19 -1.60 16 22 C -0.15 -1.56 7.05 -26.76 -0.19 -1.75 16 23 C 0.53 8.92 6.75 -10.91 -0.07 8.85 16 24 O -0.45 -9.59 14.55 -16.07 -0.23 -9.82 16 25 H 0.20 3.28 7.80 -54.08 -0.42 2.86 16 26 H 0.13 3.00 5.77 -51.93 -0.30 2.70 16 27 H 0.06 1.20 5.86 -51.93 -0.30 0.89 16 28 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.07 1.49 6.67 -51.93 -0.35 1.14 16 30 H 0.09 1.67 4.27 -51.93 -0.22 1.44 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 298.18 15.07 4.49 4.49 Total: -1.00 -34.72 298.18 -4.98 -39.70 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.53 Total: 4.91 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -0.50 Total: 12.55 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.04 Total: -42.54 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.36 Total: -34.44 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.04 Total: 15.32 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.72 -4.98 -39.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490973608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.286 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds