Wall clock time and date at job start Tue Mar 31 2020 01:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47015 * 166.92519 * 3 2 1 5 5 C 1.37099 * 120.00076 * 271.55181 * 4 3 2 6 6 H 1.08001 * 119.99937 * 175.10995 * 5 4 3 7 7 C 1.38950 * 119.99993 * 355.10374 * 5 4 3 8 8 N 1.31408 * 119.99953 * 33.63867 * 7 5 4 9 9 Si 1.86803 * 119.99962 * 213.64193 * 7 5 4 10 10 H 1.48496 * 109.47166 * 94.99555 * 9 7 5 11 11 H 1.48497 * 109.47193 * 215.00059 * 9 7 5 12 12 H 1.48499 * 109.46811 * 334.99837 * 9 7 5 13 13 C 1.34775 * 120.00066 * 91.54533 * 4 3 2 14 14 O 1.21290 * 120.00246 * 185.39110 * 13 4 3 15 15 C 1.50702 * 119.99754 * 5.39254 * 13 4 3 16 16 H 1.09007 * 109.47253 * 41.99136 * 15 13 4 17 17 C 1.52997 * 109.47547 * 281.99319 * 15 13 4 18 18 N 1.46495 * 109.47256 * 161.98932 * 15 13 4 19 19 C 1.33882 * 122.76291 * 240.00260 * 18 15 13 20 20 O 1.21218 * 125.39719 * 359.97438 * 19 18 15 21 21 C 1.51317 * 109.20284 * 179.97438 * 19 18 15 22 22 C 1.54228 * 103.69680 * 359.92307 * 21 19 18 23 23 C 1.33878 * 122.76155 * 60.00375 * 18 15 13 24 24 O 1.21228 * 125.39643 * 0.02562 * 23 18 15 25 25 H 4.40643 * 5.51424 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.46933 * 46.93085 * 3 2 1 27 27 H 1.08992 * 109.46983 * 286.92730 * 3 2 1 28 28 H 0.97003 * 119.99406 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.46513 * 300.95390 * 17 15 13 30 30 H 1.08999 * 109.47247 * 60.94546 * 17 15 13 31 31 H 1.08998 * 109.47690 * 180.95509 * 17 15 13 32 32 H 1.09001 * 110.60360 * 118.52151 * 21 19 18 33 33 H 1.08998 * 110.60467 * 241.32155 * 21 19 18 34 34 H 1.09004 * 110.60457 * 118.59187 * 22 21 19 35 35 H 1.08996 * 110.60453 * 241.55942 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3463 -0.3125 5 6 3.3317 1.7179 -1.6172 6 1 3.6151 2.7332 -1.8525 7 6 3.1680 0.7883 -2.6368 8 7 2.2598 -0.1550 -2.5263 9 14 4.2389 0.8794 -4.1647 10 1 5.4046 -0.0269 -4.0068 11 1 3.4465 0.4647 -5.3501 12 1 4.7170 2.2728 -4.3516 13 6 3.3876 2.2190 0.6827 14 8 3.6971 3.3625 0.4223 15 6 3.2870 1.7741 2.1190 16 1 3.7302 0.7838 2.2245 17 6 1.8156 1.7211 2.5347 18 7 4.0026 2.7230 2.9755 19 6 5.0364 2.3653 3.7473 20 8 5.4954 1.2466 3.8320 21 6 5.5411 3.5789 4.4971 22 6 4.6129 4.7147 4.0204 23 6 3.6765 4.0193 3.0509 24 8 2.7763 4.5536 2.4395 25 1 -1.0502 -0.0004 0.0003 26 1 3.0096 -0.7010 -0.7507 27 1 3.0094 -0.2984 0.9831 28 1 2.1458 -0.8042 -3.2380 29 1 1.3680 2.7075 2.4132 30 1 1.2867 1.0026 1.9085 31 1 1.7436 1.4156 3.5786 32 1 5.4462 3.4319 5.5730 33 1 6.5762 3.7917 4.2301 34 1 4.0562 5.1327 4.8592 35 1 5.1860 5.4912 3.5139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490973608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:16 Heat of formation + Delta-G solvation = -36.818519 kcal Electronic energy + Delta-G solvation = -22418.752718 eV Core-core repulsion = 18998.278800 eV Total energy + Delta-G solvation = -3420.473918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.94703 -40.49668 -39.48309 -37.21975 -36.77814 -35.29797 -34.00617 -33.18239 -31.20761 -28.44319 -27.02952 -26.97921 -25.20080 -23.22664 -21.93909 -20.02915 -19.74221 -18.48811 -18.39225 -18.01910 -17.62348 -17.13099 -16.46270 -16.17353 -15.98419 -15.49675 -15.16039 -14.93139 -14.84468 -14.68988 -14.30856 -14.21927 -13.83923 -13.66489 -13.21530 -13.16474 -12.93055 -12.80474 -12.48555 -12.17501 -12.03786 -11.49861 -11.24366 -11.19489 -11.06804 -10.87860 -10.63442 -10.17847 -10.02026 -8.50871 -5.88957 0.64315 1.28454 1.37067 1.44372 1.53861 1.74318 1.87990 2.07999 2.23370 2.28808 2.85580 3.00452 3.31357 3.36462 3.70129 3.71567 3.80801 3.88352 3.96964 4.22234 4.24387 4.53006 4.57209 4.73768 4.77091 4.94465 4.96089 4.97878 5.02011 5.32753 5.42885 5.89859 5.97643 6.34859 6.46697 6.88688 7.00197 7.06249 7.31346 7.87764 8.50628 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021294 B = 0.006252 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.622347 B = 4477.837856 C = 4908.472754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.162 4.162 3 C 0.215 3.785 4 N -0.443 5.443 5 C -0.366 4.366 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.852 5.852 9 Si 0.975 3.025 10 H -0.264 1.264 11 H -0.272 1.272 12 H -0.280 1.280 13 C 0.425 3.575 14 O -0.608 6.608 15 C 0.121 3.879 16 H 0.118 0.882 17 C -0.154 4.154 18 N -0.567 5.567 19 C 0.517 3.483 20 O -0.527 6.527 21 C -0.133 4.133 22 C -0.137 4.137 23 C 0.510 3.490 24 O -0.508 6.508 25 H 0.239 0.761 26 H 0.112 0.888 27 H 0.090 0.910 28 H 0.278 0.722 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.451 1.616 14.803 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.163 4.163 3 C 0.093 3.907 4 N -0.161 5.161 5 C -0.492 4.492 6 H 0.092 0.908 7 C -0.188 4.188 8 N -0.488 5.488 9 Si 0.798 3.202 10 H -0.189 1.189 11 H -0.198 1.198 12 H -0.205 1.205 13 C 0.213 3.787 14 O -0.494 6.494 15 C 0.014 3.986 16 H 0.136 0.864 17 C -0.211 4.211 18 N -0.310 5.310 19 C 0.309 3.691 20 O -0.402 6.402 21 C -0.172 4.172 22 C -0.176 4.176 23 C 0.301 3.699 24 O -0.380 6.380 25 H 0.255 0.745 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.178 0.822 33 H 0.161 0.839 34 H 0.172 0.828 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.274 1.687 14.244 14.713 hybrid contribution -0.180 -0.182 -1.562 1.583 sum 3.094 1.505 12.682 13.141 Atomic orbital electron populations 1.25280 0.96396 0.99882 1.03584 1.23371 0.94908 1.00413 0.97643 1.18787 0.85044 0.85775 1.01124 1.43926 1.55294 1.11398 1.05479 1.19462 1.49000 0.98258 0.82470 0.90848 1.25850 0.95904 0.95497 1.01577 1.70298 1.25539 1.17521 1.35441 0.85233 0.79101 0.78509 0.77318 1.18890 1.19762 1.20533 1.20573 0.84809 0.85794 0.87510 1.90511 1.54701 1.19770 1.84410 1.21009 0.96007 0.93818 0.87754 0.86410 1.22135 0.92089 1.03493 1.03430 1.46858 1.32160 1.12102 1.39866 1.21899 0.77311 0.91621 0.78262 1.90721 1.59501 1.24937 1.65084 1.22583 1.02692 0.88064 1.03848 1.22643 0.96586 0.99011 0.99334 1.21959 0.84671 0.81299 0.81990 1.90730 1.32649 1.69097 1.45524 0.74468 0.87095 0.89202 0.91190 0.92953 0.89808 0.88847 0.82217 0.83943 0.82801 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -9.18 18.83 74.32 1.40 -7.78 16 2 C -0.16 -7.20 9.78 31.13 0.30 -6.89 16 3 C 0.21 9.83 4.78 84.57 0.40 10.23 16 4 N -0.44 -23.65 2.59 -645.42 -1.67 -25.32 16 5 C -0.37 -21.34 9.39 84.04 0.79 -20.55 16 6 H 0.07 4.72 7.36 -2.91 -0.02 4.70 16 7 C 0.02 0.91 4.90 84.93 0.42 1.33 16 8 N -0.85 -44.02 9.56 21.66 0.21 -43.82 16 9 Si 0.98 42.40 29.66 68.60 2.03 44.43 16 10 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 13 C 0.42 22.08 6.75 87.66 0.59 22.67 16 14 O -0.61 -36.10 13.63 17.66 0.24 -35.86 16 15 C 0.12 4.85 2.29 44.25 0.10 4.95 16 16 H 0.12 4.49 5.87 -2.38 -0.01 4.47 16 17 C -0.15 -5.54 9.00 71.98 0.65 -4.89 16 18 N -0.57 -19.58 2.40 -737.67 -1.77 -21.35 16 19 C 0.52 14.54 8.08 87.99 0.71 15.26 16 20 O -0.53 -17.96 17.23 -2.84 -0.05 -18.01 16 21 C -0.13 -1.85 7.02 30.46 0.21 -1.63 16 22 C -0.14 -2.26 7.05 30.58 0.22 -2.05 16 23 C 0.51 17.08 6.75 88.11 0.59 17.68 16 24 O -0.51 -22.44 14.55 17.85 0.26 -22.18 16 25 H 0.24 7.11 7.80 -4.41 -0.03 7.08 16 26 H 0.11 5.37 5.77 -2.39 -0.01 5.35 16 27 H 0.09 3.48 5.86 -2.39 -0.01 3.47 16 28 H 0.28 13.33 8.31 -92.71 -0.77 12.56 16 29 H 0.05 2.13 6.67 -2.39 -0.02 2.11 16 30 H 0.08 3.11 4.27 -2.39 -0.01 3.10 16 31 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.15 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -82.22 298.18 6.78 -75.44 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.13 Total: 18.34 kcal Atomic # 6 Polarization: 21.93 SS G_CDS: 6.39 Total: 28.32 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -3.23 Total: -90.48 kcal Atomic # 8 Polarization: -76.50 SS G_CDS: 0.45 Total: -76.05 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -82.22 6.78 -75.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490973608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.621 kcal (2) G-P(sol) polarization free energy of solvation -82.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds