Wall clock time and date at job start Tue Mar 31 2020 00:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.82266 * 2 1 4 4 C 1.54379 * 109.83253 * 239.11693 * 2 1 3 5 5 C 1.55308 * 102.25341 * 219.12775 * 4 2 1 6 6 H 1.09004 * 111.12516 * 276.17012 * 5 4 2 7 7 N 1.46493 * 111.12677 * 152.05034 * 5 4 2 8 8 S 1.65601 * 120.00093 * 145.00192 * 7 5 4 9 9 O 1.42101 * 106.40337 * 311.45691 * 8 7 5 10 10 O 1.42107 * 106.40457 * 178.54106 * 8 7 5 11 11 N 1.65598 * 107.21981 * 64.99654 * 8 7 5 12 12 C 1.46498 * 120.00114 * 270.00232 * 11 8 7 13 13 C 1.46504 * 119.99873 * 90.00004 * 11 8 7 14 14 C 1.50703 * 109.47029 * 95.00184 * 13 11 8 15 15 H 1.08006 * 120.00159 * 359.97438 * 14 13 11 16 16 C 1.37877 * 120.00120 * 180.02562 * 14 13 11 17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.54947 * 100.94085 * 34.12741 * 5 4 2 23 23 O 1.43234 * 109.83235 * 120.97661 * 2 1 3 24 24 H 1.09003 * 109.47229 * 180.88727 * 1 2 3 25 25 H 1.09000 * 109.47189 * 300.88283 * 1 2 3 26 26 H 1.08996 * 109.47539 * 60.88862 * 1 2 3 27 27 H 1.09000 * 110.85383 * 100.93778 * 4 2 1 28 28 H 1.09001 * 110.84504 * 337.31591 * 4 2 1 29 29 H 0.97003 * 120.00557 * 324.99758 * 7 5 4 30 30 H 1.08997 * 109.47090 * 269.99697 * 12 11 8 31 31 H 1.08999 * 109.47238 * 30.00007 * 12 11 8 32 32 H 1.08996 * 109.46898 * 150.00309 * 12 11 8 33 33 H 1.09003 * 109.46930 * 335.00450 * 13 11 8 34 34 H 1.08996 * 109.47301 * 215.00017 * 13 11 8 35 35 H 0.96998 * 119.99255 * 0.02562 * 17 16 14 36 36 H 1.09007 * 110.30462 * 82.47679 * 22 5 4 37 37 H 1.08997 * 110.30964 * 204.63759 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7454 -1.2463 5 6 3.2730 -1.5215 -0.6780 6 1 4.1623 -0.8916 -0.6521 7 7 3.5206 -2.7475 -1.4406 8 16 5.0721 -3.2750 -1.6794 9 8 5.8133 -2.1500 -2.1314 10 8 4.9751 -4.4878 -2.4137 11 7 5.6879 -3.6750 -0.1951 12 6 6.3857 -2.6653 0.6047 13 6 5.5347 -5.0386 0.3182 14 6 6.7681 -5.8402 -0.0096 15 1 7.5842 -5.3800 -0.5469 16 6 6.8542 -7.1612 0.3756 17 7 5.8603 -7.7217 1.0294 18 14 8.3833 -8.1545 -0.0301 19 1 8.2120 -8.8095 -1.3519 20 1 8.5913 -9.1912 1.0127 21 1 9.5624 -7.2528 -0.0737 22 6 2.7748 -1.8449 0.7531 23 8 2.0159 -0.6935 1.1552 24 1 -0.3634 -1.0276 0.0159 25 1 -0.3633 0.5275 0.8820 26 1 -0.3634 0.4999 -0.8978 27 1 2.3671 -0.0408 -2.0166 28 1 1.3012 -1.4335 -1.6315 29 1 2.7759 -3.2505 -1.8057 30 1 7.4483 -2.6806 0.3625 31 1 5.9766 -1.6796 0.3828 32 1 6.2514 -2.8844 1.6639 33 1 4.6647 -5.5052 -0.1440 34 1 5.3988 -5.0068 1.3991 35 1 5.0665 -7.2057 1.2403 36 1 2.1402 -2.7311 0.7414 37 1 3.6210 -1.9935 1.4237 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517561985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:33 Heat of formation + Delta-G solvation = -127.505765 kcal Electronic energy + Delta-G solvation = -20971.295479 eV Core-core repulsion = 17682.333018 eV Total energy + Delta-G solvation = -3288.962461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.84697 -36.76163 -35.74794 -35.31824 -34.96504 -32.65908 -32.27715 -29.38938 -27.54758 -26.23560 -24.88963 -22.52292 -21.87490 -21.32785 -19.33572 -17.78671 -17.11623 -16.74063 -16.57545 -16.44478 -15.38512 -15.02851 -14.15560 -14.00678 -13.88435 -13.72085 -13.36571 -13.18691 -12.83155 -12.64743 -12.34363 -12.27129 -12.01099 -11.74464 -11.65648 -11.53393 -11.33870 -11.29936 -11.13094 -10.97634 -10.67088 -10.54281 -10.10616 -9.76865 -9.47885 -9.38332 -8.40730 -8.01623 -6.42174 -4.13980 1.03506 3.23630 3.45220 3.48306 3.63358 3.66070 4.00825 4.21597 4.52098 4.52889 4.62637 4.76324 4.91223 4.92559 5.07294 5.25828 5.34124 5.37842 5.45241 5.48408 5.52456 5.69611 5.78978 5.89256 5.92424 6.02410 6.19487 6.36400 6.78690 6.82424 6.95310 7.13731 7.38621 7.97269 8.41707 8.77079 9.54883 10.95999 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030129 B = 0.005031 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.115545 B = 5564.022267 C = 5897.467115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.075 3.925 3 H 0.083 0.917 4 C -0.157 4.157 5 C 0.119 3.881 6 H 0.109 0.891 7 N -1.121 6.121 8 S 2.781 3.219 9 O -0.993 6.993 10 O -0.960 6.960 11 N -0.992 5.992 12 C 0.106 3.894 13 C 0.248 3.752 14 C -0.609 4.609 15 H 0.055 0.945 16 C 0.021 3.979 17 N -0.910 5.910 18 Si 1.072 2.928 19 H -0.286 1.286 20 H -0.284 1.284 21 H -0.288 1.288 22 C 0.035 3.965 23 O -0.375 6.375 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.414 0.586 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.267 0.733 36 H 0.069 0.931 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.120 15.097 -1.447 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.101 0.899 4 C -0.196 4.196 5 C 0.010 3.990 6 H 0.126 0.874 7 N -0.879 5.879 8 S 2.788 3.212 9 O -0.976 6.976 10 O -0.944 6.944 11 N -0.834 5.834 12 C -0.041 4.041 13 C 0.126 3.874 14 C -0.648 4.648 15 H 0.073 0.927 16 C -0.183 4.183 17 N -0.546 5.546 18 Si 0.900 3.100 19 H -0.212 1.212 20 H -0.209 1.209 21 H -0.214 1.214 22 C -0.044 4.044 23 O -0.294 6.294 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.248 0.752 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.852 13.709 -1.832 15.904 hybrid contribution -1.212 1.213 -0.163 1.722 sum -9.064 14.922 -1.995 17.572 Atomic orbital electron populations 1.22142 0.94810 1.02723 1.02285 1.22691 0.94530 0.96428 0.84664 0.89900 1.23474 0.97502 1.00142 0.98454 1.22394 0.99726 0.86001 0.90909 0.87354 1.56259 1.27967 1.34756 1.68899 1.02027 0.72729 0.72854 0.73543 1.93548 1.70156 1.54141 1.79799 1.93655 1.85775 1.45111 1.69825 1.57488 1.68786 1.19036 1.38140 1.21266 0.97418 0.88908 0.96465 1.19138 0.97782 0.75862 0.94647 1.22322 1.03367 0.98441 1.40666 0.92692 1.25811 1.03031 0.95530 0.93929 1.70801 1.06600 1.39723 1.37454 0.83501 0.74301 0.75562 0.76628 1.21224 1.20919 1.21401 1.23928 0.95917 0.89152 0.95373 1.88464 1.70827 1.40427 1.29696 0.92107 0.91863 0.91520 0.89193 0.89603 0.75234 0.92790 0.93004 0.91355 0.95536 0.95632 0.92322 0.91254 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.44 37.15 0.35 -0.94 16 2 C 0.07 0.71 4.16 -26.01 -0.11 0.60 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.16 -1.46 6.23 -24.78 -0.15 -1.61 16 5 C 0.12 1.41 3.79 -65.68 -0.25 1.16 16 6 H 0.11 1.30 6.98 -51.93 -0.36 0.94 16 7 N -1.12 -15.46 5.68 -2.98 -0.02 -15.47 16 8 S 2.78 53.06 6.03 -107.50 -0.65 52.41 16 9 O -0.99 -20.07 16.62 -57.17 -0.95 -21.02 16 10 O -0.96 -22.45 17.11 -57.17 -0.98 -23.43 16 11 N -0.99 -19.85 3.23 -123.05 -0.40 -20.25 16 12 C 0.11 1.76 10.33 59.85 0.62 2.38 16 13 C 0.25 6.02 4.43 -5.19 -0.02 6.00 16 14 C -0.61 -17.13 9.38 -34.44 -0.32 -17.45 16 15 H 0.05 1.57 7.81 -52.48 -0.41 1.16 16 16 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 17 N -0.91 -27.08 13.65 55.43 0.76 -26.32 16 18 Si 1.07 25.57 29.90 -169.99 -5.08 20.49 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.03 0.42 7.48 38.19 0.29 0.71 16 23 O -0.38 -4.59 11.02 -35.23 -0.39 -4.97 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 0.72 7.76 -51.93 -0.40 0.32 16 29 H 0.41 4.92 8.82 -34.47 -0.30 4.62 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.71 7.16 -51.93 -0.37 0.33 16 32 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 33 H 0.03 0.68 7.48 -51.93 -0.39 0.29 16 34 H 0.03 0.62 7.83 -51.93 -0.41 0.21 16 35 H 0.27 7.76 7.22 -40.82 -0.29 7.46 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -34.57 319.39 -8.12 -42.69 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.53 Total: -0.29 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 0.30 Total: -8.64 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.34 Total: -62.04 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -2.32 Total: -49.42 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -0.65 Total: 52.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.57 -8.12 -42.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517561985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.817 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds