Wall clock time and date at job start Tue Mar 31 2020 00:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.82266 * 2 1 4 4 C 1.54379 * 109.83253 * 239.11693 * 2 1 3 5 5 C 1.55308 * 102.25341 * 219.12775 * 4 2 1 6 6 H 1.09004 * 111.12516 * 276.17012 * 5 4 2 7 7 N 1.46493 * 111.12677 * 152.05034 * 5 4 2 8 8 S 1.65601 * 120.00093 * 145.00192 * 7 5 4 9 9 O 1.42101 * 106.40337 * 311.45691 * 8 7 5 10 10 O 1.42107 * 106.40457 * 178.54106 * 8 7 5 11 11 N 1.65598 * 107.21981 * 64.99654 * 8 7 5 12 12 C 1.46498 * 120.00114 * 270.00232 * 11 8 7 13 13 C 1.46504 * 119.99873 * 90.00004 * 11 8 7 14 14 C 1.50703 * 109.47029 * 95.00184 * 13 11 8 15 15 H 1.08006 * 120.00159 * 359.97438 * 14 13 11 16 16 C 1.37877 * 120.00120 * 180.02562 * 14 13 11 17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 C 1.54947 * 100.94085 * 34.12741 * 5 4 2 23 23 O 1.43234 * 109.83235 * 120.97661 * 2 1 3 24 24 H 1.09003 * 109.47229 * 180.88727 * 1 2 3 25 25 H 1.09000 * 109.47189 * 300.88283 * 1 2 3 26 26 H 1.08996 * 109.47539 * 60.88862 * 1 2 3 27 27 H 1.09000 * 110.85383 * 100.93778 * 4 2 1 28 28 H 1.09001 * 110.84504 * 337.31591 * 4 2 1 29 29 H 0.97003 * 120.00557 * 324.99758 * 7 5 4 30 30 H 1.08997 * 109.47090 * 269.99697 * 12 11 8 31 31 H 1.08999 * 109.47238 * 30.00007 * 12 11 8 32 32 H 1.08996 * 109.46898 * 150.00309 * 12 11 8 33 33 H 1.09003 * 109.46930 * 335.00450 * 13 11 8 34 34 H 1.08996 * 109.47301 * 215.00017 * 13 11 8 35 35 H 0.96998 * 119.99255 * 0.02562 * 17 16 14 36 36 H 1.09007 * 110.30462 * 82.47679 * 22 5 4 37 37 H 1.08997 * 110.30964 * 204.63759 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0537 -0.7454 -1.2463 5 6 3.2730 -1.5215 -0.6780 6 1 4.1623 -0.8916 -0.6521 7 7 3.5206 -2.7475 -1.4406 8 16 5.0721 -3.2750 -1.6794 9 8 5.8133 -2.1500 -2.1314 10 8 4.9751 -4.4878 -2.4137 11 7 5.6879 -3.6750 -0.1951 12 6 6.3857 -2.6653 0.6047 13 6 5.5347 -5.0386 0.3182 14 6 6.7681 -5.8402 -0.0096 15 1 7.5842 -5.3800 -0.5469 16 6 6.8542 -7.1612 0.3756 17 7 5.8603 -7.7217 1.0294 18 14 8.3833 -8.1545 -0.0301 19 1 8.2120 -8.8095 -1.3519 20 1 8.5913 -9.1912 1.0127 21 1 9.5624 -7.2528 -0.0737 22 6 2.7748 -1.8449 0.7531 23 8 2.0159 -0.6935 1.1552 24 1 -0.3634 -1.0276 0.0159 25 1 -0.3633 0.5275 0.8820 26 1 -0.3634 0.4999 -0.8978 27 1 2.3671 -0.0408 -2.0166 28 1 1.3012 -1.4335 -1.6315 29 1 2.7759 -3.2505 -1.8057 30 1 7.4483 -2.6806 0.3625 31 1 5.9766 -1.6796 0.3828 32 1 6.2514 -2.8844 1.6639 33 1 4.6647 -5.5052 -0.1440 34 1 5.3988 -5.0068 1.3991 35 1 5.0665 -7.2057 1.2403 36 1 2.1402 -2.7311 0.7414 37 1 3.6210 -1.9935 1.4237 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517561985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:32 Heat of formation + Delta-G solvation = -154.946458 kcal Electronic energy + Delta-G solvation = -20972.485397 eV Core-core repulsion = 17682.333018 eV Total energy + Delta-G solvation = -3290.152378 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.71828 -38.40068 -37.46288 -36.97748 -36.05720 -34.70185 -33.03367 -30.36542 -29.35582 -27.02378 -26.63732 -24.46995 -22.84898 -22.10372 -20.71520 -19.48528 -18.67953 -18.38675 -17.64695 -17.59992 -16.74492 -16.25915 -15.67755 -15.58017 -15.06366 -14.99354 -14.74780 -14.28469 -14.16051 -13.98783 -13.55089 -13.42411 -13.32737 -13.27581 -13.22078 -12.96122 -12.84640 -12.69193 -12.44679 -12.31276 -12.11712 -11.93074 -11.77110 -11.29129 -10.71391 -10.56652 -10.48142 -9.81503 -8.65926 -6.39510 -0.47873 1.52652 1.60495 1.78231 1.85619 2.45177 2.56155 2.86889 3.13473 3.29818 3.36542 3.72865 3.79617 3.84909 3.99503 4.16226 4.29106 4.44122 4.55661 4.66498 4.69241 4.73982 4.77280 4.83690 4.91743 4.96072 5.01129 5.18943 5.28144 5.32972 5.60595 5.85887 5.92895 6.03958 6.20942 6.54232 7.36148 8.72215 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030129 B = 0.005031 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.115545 B = 5564.022267 C = 5897.467115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.068 3.932 3 H 0.097 0.903 4 C -0.150 4.150 5 C 0.110 3.890 6 H 0.111 0.889 7 N -1.103 6.103 8 S 2.799 3.201 9 O -1.004 7.004 10 O -1.008 7.008 11 N -0.998 5.998 12 C 0.097 3.903 13 C 0.259 3.741 14 C -0.625 4.625 15 H 0.043 0.957 16 C -0.027 4.027 17 N -0.931 5.931 18 Si 1.111 2.889 19 H -0.279 1.279 20 H -0.275 1.275 21 H -0.272 1.272 22 C 0.035 3.965 23 O -0.392 6.392 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.425 0.575 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.013 0.987 34 H 0.027 0.973 35 H 0.260 0.740 36 H 0.066 0.934 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 16.499 -1.686 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 H 0.115 0.885 4 C -0.189 4.189 5 C 0.002 3.998 6 H 0.129 0.871 7 N -0.866 5.866 8 S 2.807 3.193 9 O -0.987 6.987 10 O -0.992 6.992 11 N -0.839 5.839 12 C -0.048 4.048 13 C 0.135 3.865 14 C -0.664 4.664 15 H 0.061 0.939 16 C -0.226 4.226 17 N -0.568 5.568 18 Si 0.933 3.067 19 H -0.205 1.205 20 H -0.200 1.200 21 H -0.197 1.197 22 C -0.043 4.043 23 O -0.311 6.311 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.125 0.875 28 H 0.114 0.886 29 H 0.261 0.739 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.031 0.969 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.230 15.144 -2.070 17.360 hybrid contribution -1.176 0.907 -0.083 1.487 sum -9.406 16.051 -2.153 18.728 Atomic orbital electron populations 1.22138 0.93693 1.02595 1.03289 1.22931 0.95475 0.96787 0.83726 0.88493 1.23507 0.96315 1.00251 0.98792 1.22626 1.01133 0.85139 0.90911 0.87133 1.55726 1.26319 1.35512 1.69018 1.01253 0.73436 0.71802 0.72831 1.93529 1.71256 1.54003 1.79916 1.93587 1.86788 1.47509 1.71296 1.57383 1.69949 1.18104 1.38468 1.21508 0.96894 0.89543 0.96895 1.18759 0.95688 0.77587 0.94468 1.22697 1.04336 0.99168 1.40173 0.93854 1.27129 1.05001 0.97033 0.93415 1.70903 1.07050 1.39908 1.38970 0.83016 0.71929 0.74947 0.76844 1.20533 1.20047 1.19658 1.23862 0.95851 0.89283 0.95332 1.88454 1.70960 1.40459 1.31201 0.92760 0.91968 0.89488 0.87499 0.88588 0.73874 0.93672 0.89774 0.90112 0.96922 0.95513 0.93090 0.91614 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.44 71.98 0.68 -1.47 16 2 C 0.07 1.11 4.16 31.06 0.13 1.24 16 3 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.15 -2.35 6.23 31.86 0.20 -2.15 16 5 C 0.11 2.39 3.79 46.45 0.18 2.56 16 6 H 0.11 2.38 6.98 -2.39 -0.02 2.37 16 7 N -1.10 -28.94 5.68 -163.36 -0.93 -29.87 16 8 S 2.80 105.30 6.03 -56.49 -0.34 104.96 16 9 O -1.00 -39.38 16.62 -128.00 -2.13 -41.50 16 10 O -1.01 -47.61 17.11 -128.00 -2.19 -49.80 16 11 N -1.00 -39.57 3.23 -543.23 -1.75 -41.32 16 12 C 0.10 3.11 10.33 127.77 1.32 4.43 16 13 C 0.26 12.70 4.43 85.63 0.38 13.08 16 14 C -0.62 -35.44 9.38 25.60 0.24 -35.20 16 15 H 0.04 2.50 7.81 -2.91 -0.02 2.48 16 16 C -0.03 -1.53 5.46 84.65 0.46 -1.07 16 17 N -0.93 -55.86 13.65 21.45 0.29 -55.57 16 18 Si 1.11 51.11 29.90 68.60 2.05 53.16 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 C 0.04 0.80 7.48 72.65 0.54 1.35 16 23 O -0.39 -8.87 11.02 -148.98 -1.64 -10.52 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.10 1.33 7.76 -2.39 -0.02 1.31 16 29 H 0.43 9.54 8.82 -96.75 -0.85 8.69 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 2.13 7.16 -2.39 -0.02 2.11 16 32 H 0.08 2.37 7.94 -2.39 -0.02 2.35 16 33 H 0.01 0.66 7.48 -2.39 -0.02 0.65 16 34 H 0.03 1.30 7.83 -2.39 -0.02 1.29 16 35 H 0.26 15.38 7.22 -92.71 -0.67 14.71 16 36 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -73.67 319.39 -2.20 -75.87 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.31 Total: 11.81 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 4.13 Total: -17.23 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -2.39 Total: -126.76 kcal Atomic # 8 Polarization: -95.87 SS G_CDS: -5.96 Total: -101.82 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.16 kcal Atomic # 16 Polarization: 105.30 SS G_CDS: -0.34 Total: 104.96 kcal Total: -73.67 -2.20 -75.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517561985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.077 kcal (2) G-P(sol) polarization free energy of solvation -73.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds