Wall clock time and date at job start Tue Mar 31 2020 00:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.35183 * 2 1 4 4 C 1.54945 * 110.30845 * 122.14405 * 2 1 3 5 5 C 1.55301 * 100.94080 * 155.36239 * 4 2 1 6 6 H 1.09000 * 110.85160 * 84.05588 * 5 4 2 7 7 N 1.46500 * 110.84662 * 207.67505 * 5 4 2 8 8 S 1.65602 * 120.00080 * 209.28179 * 7 5 4 9 9 O 1.42100 * 106.40436 * 178.54012 * 8 7 5 10 10 O 1.42102 * 106.40231 * 311.45994 * 8 7 5 11 11 N 1.65598 * 107.21853 * 65.00150 * 8 7 5 12 12 C 1.46497 * 120.00166 * 270.00408 * 11 8 7 13 13 C 1.46499 * 119.99920 * 89.99793 * 11 8 7 14 14 C 1.50702 * 109.47230 * 95.00701 * 13 11 8 15 15 H 1.07997 * 119.99459 * 359.97438 * 14 13 11 16 16 C 1.37871 * 120.00241 * 180.02562 * 14 13 11 17 17 N 1.31516 * 119.99916 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47196 * 60.00302 * 18 16 14 20 20 H 1.48504 * 109.47085 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47562 * 299.99999 * 18 16 14 22 22 C 1.54381 * 102.25481 * 325.86233 * 5 4 2 23 23 O 1.43240 * 107.58517 * 21.36000 * 22 5 4 24 24 H 1.09000 * 109.47246 * 180.69153 * 1 2 3 25 25 H 1.09002 * 109.47322 * 300.68827 * 1 2 3 26 26 H 1.08999 * 109.47507 * 60.68679 * 1 2 3 27 27 H 1.09002 * 111.12670 * 273.27661 * 4 2 1 28 28 H 1.08995 * 111.12824 * 37.43995 * 4 2 1 29 29 H 0.97001 * 120.00093 * 29.28771 * 7 5 4 30 30 H 1.09002 * 109.47720 * 89.99273 * 12 11 8 31 31 H 1.09004 * 109.47582 * 209.99897 * 12 11 8 32 32 H 1.09001 * 109.46973 * 329.99584 * 12 11 8 33 33 H 1.09005 * 109.46955 * 215.00152 * 13 11 8 34 34 H 1.08998 * 109.47341 * 335.00062 * 13 11 8 35 35 H 0.97007 * 120.00045 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.83261 * 261.85076 * 22 5 4 37 37 H 1.08994 * 109.90703 * 140.91139 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0678 -0.7731 1.2304 5 6 3.4699 -1.2025 0.7189 6 1 4.1974 -0.4040 0.8650 7 7 3.9089 -2.4364 1.3754 8 16 5.5240 -2.7249 1.6008 9 8 5.6182 -3.9671 2.2843 10 8 6.1543 -2.4752 0.3519 11 7 6.0866 -1.5715 2.6474 12 6 6.6076 -0.3040 2.1296 13 6 6.0633 -1.8186 4.0912 14 6 7.4012 -2.3553 4.5307 15 1 8.1898 -2.4983 3.8068 16 6 7.6181 -2.6646 5.8567 17 7 6.6576 -2.4908 6.7381 18 14 9.2763 -3.3304 6.4012 19 1 10.3357 -2.3385 6.0863 20 1 9.2527 -3.5808 7.8648 21 1 9.5589 -4.6006 5.6858 22 6 3.2112 -1.4420 -0.7841 23 8 2.0286 -0.7168 -1.1406 24 1 -0.3634 -1.0276 0.0124 25 1 -0.3634 0.5245 0.8838 26 1 -0.3634 0.5031 -0.8960 27 1 2.1496 -0.1204 2.0995 28 1 1.4471 -1.6416 1.4507 29 1 3.2537 -3.0844 1.6781 30 1 5.7957 0.4197 2.0559 31 1 7.3738 0.0770 2.8048 32 1 7.0409 -0.4654 1.1425 33 1 5.8557 -0.8861 4.6161 34 1 5.2859 -2.5467 4.3227 35 1 6.8104 -2.7080 7.6711 36 1 3.0623 -2.5059 -0.9688 37 1 4.0571 -1.0801 -1.3685 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517561994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:36 Heat of formation + Delta-G solvation = -124.010307 kcal Electronic energy + Delta-G solvation = -20817.919272 eV Core-core repulsion = 17529.108386 eV Total energy + Delta-G solvation = -3288.810886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.75239 -36.66488 -35.56739 -35.22241 -34.88275 -32.46897 -32.26595 -29.32819 -27.82902 -26.13524 -25.11145 -22.34972 -21.73948 -21.38984 -19.09995 -17.52277 -16.96733 -16.62531 -16.54688 -16.16112 -15.41728 -15.09431 -14.42832 -14.01592 -13.91896 -13.44083 -13.34757 -13.06695 -12.76173 -12.38913 -12.27305 -12.20252 -11.93028 -11.67696 -11.52677 -11.47876 -11.28935 -11.19639 -11.09228 -10.92290 -10.75064 -10.52921 -10.07027 -9.82606 -9.65849 -9.40707 -8.47031 -8.13280 -6.09381 -4.13629 1.14355 3.31668 3.33032 3.35765 3.40765 3.72603 4.00465 4.33376 4.42908 4.59416 4.69817 4.84528 4.95833 5.02316 5.12898 5.25984 5.36780 5.45718 5.50477 5.60643 5.64092 5.77201 5.87548 5.90334 5.96069 6.10127 6.26195 6.50223 6.85159 7.01681 7.20276 7.36342 7.55359 7.87835 8.16724 8.88502 9.51861 10.99208 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032255 B = 0.004793 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.864442 B = 5840.578370 C = 6169.146078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 H 0.074 0.926 4 C -0.157 4.157 5 C 0.125 3.875 6 H 0.101 0.899 7 N -1.122 6.122 8 S 2.779 3.221 9 O -0.961 6.961 10 O -0.994 6.994 11 N -0.995 5.995 12 C 0.092 3.908 13 C 0.258 3.742 14 C -0.531 4.531 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.036 3.964 23 O -0.380 6.380 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.414 0.586 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.077 0.923 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.630 6.430 -10.839 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 H 0.092 0.908 4 C -0.196 4.196 5 C 0.016 3.984 6 H 0.119 0.881 7 N -0.880 5.880 8 S 2.786 3.214 9 O -0.945 6.945 10 O -0.978 6.978 11 N -0.838 5.838 12 C -0.054 4.054 13 C 0.136 3.864 14 C -0.571 4.571 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.042 4.042 23 O -0.300 6.300 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.248 0.752 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.111 5.848 -11.300 16.252 hybrid contribution 0.524 -0.343 1.024 1.200 sum -9.588 5.505 -10.276 15.094 Atomic orbital electron populations 1.21878 0.93583 1.02869 1.02412 1.22934 0.95064 0.95672 0.84693 0.90804 1.23621 0.95358 1.01698 0.98910 1.22168 0.97517 0.86911 0.91822 0.88143 1.56315 1.28349 1.28933 1.74378 1.02069 0.72646 0.73653 0.73004 1.93654 1.85112 1.41305 1.74384 1.93538 1.74357 1.86215 1.43669 1.57600 1.75437 1.30455 1.20338 1.21406 0.98927 0.85274 0.99818 1.19055 0.97797 0.97215 0.72350 1.21455 0.98558 1.43499 0.93542 0.92197 1.24926 0.97270 0.95315 0.96446 1.69908 1.32430 1.48431 1.02742 0.86566 0.83779 0.79754 0.77413 1.20156 1.21145 1.19963 1.23689 0.88021 0.97498 0.95032 1.88427 1.42684 1.64984 1.33855 0.91910 0.91132 0.91869 0.88914 0.89439 0.75222 0.94436 0.90186 0.91443 0.94688 0.94434 0.92608 0.90527 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.62 37.16 0.36 -0.84 16 2 C 0.07 0.72 4.07 -25.71 -0.10 0.61 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.16 -1.54 6.22 -24.49 -0.15 -1.70 16 5 C 0.12 1.51 3.54 -65.99 -0.23 1.28 16 6 H 0.10 1.17 6.75 -51.93 -0.35 0.82 16 7 N -1.12 -15.83 5.62 -3.24 -0.02 -15.84 16 8 S 2.78 53.03 6.05 -107.50 -0.65 52.38 16 9 O -0.96 -22.49 17.11 -57.17 -0.98 -23.47 16 10 O -0.99 -19.83 16.50 -57.17 -0.94 -20.77 16 11 N -1.00 -19.87 3.23 -123.05 -0.40 -20.27 16 12 C 0.09 1.51 10.17 59.85 0.61 2.12 16 13 C 0.26 6.31 5.08 -5.19 -0.03 6.28 16 14 C -0.53 -14.76 9.38 -34.44 -0.32 -15.08 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.90 -25.86 13.29 55.43 0.74 -25.13 16 18 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.04 0.45 7.56 37.88 0.29 0.73 16 23 O -0.38 -4.70 11.04 -35.23 -0.39 -5.09 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.09 0.82 7.93 -51.93 -0.41 0.40 16 29 H 0.41 5.11 8.74 -34.47 -0.30 4.81 16 30 H 0.04 0.49 7.39 -51.93 -0.38 0.11 16 31 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.07 1.04 7.02 -51.93 -0.36 0.68 16 33 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 34 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -33.44 319.42 -8.08 -41.52 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.55 Total: 0.12 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 0.31 Total: -4.92 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.32 Total: -61.24 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -2.31 Total: -49.33 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 53.03 SS G_CDS: -0.65 Total: 52.38 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.44 -8.08 -41.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517561994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.492 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds