Wall clock time and date at job start Tue Mar 31 2020 00:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.33335 * 2 1 4 4 C 1.54485 * 110.37097 * 122.25010 * 2 1 3 5 5 C 1.54506 * 104.05817 * 142.92127 * 4 2 1 6 6 H 1.09004 * 110.51231 * 241.35021 * 5 4 2 7 7 N 1.46500 * 110.50836 * 118.64753 * 5 4 2 8 8 S 1.65601 * 119.99996 * 144.61411 * 7 5 4 9 9 O 1.42101 * 106.40150 * 48.65990 * 8 7 5 10 10 O 1.42104 * 106.40390 * 181.58338 * 8 7 5 11 11 N 1.65604 * 107.21890 * 295.12199 * 8 7 5 12 12 C 1.46503 * 119.99964 * 95.31779 * 11 8 7 13 13 C 1.46503 * 119.99677 * 275.31758 * 11 8 7 14 14 C 1.50697 * 109.46962 * 96.51202 * 13 11 8 15 15 H 1.08001 * 120.00066 * 4.94656 * 14 13 11 16 16 C 1.37879 * 119.99790 * 184.94718 * 14 13 11 17 17 N 1.31513 * 119.99939 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99983 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47091 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47154 * 119.99708 * 18 16 14 21 21 H 1.48497 * 109.46615 * 239.99807 * 18 16 14 22 22 C 1.54477 * 104.06774 * 0.02562 * 5 4 2 23 23 O 1.44418 * 104.80193 * 336.01965 * 22 5 4 24 24 H 1.08998 * 109.46888 * 297.74911 * 1 2 3 25 25 H 1.09010 * 109.46816 * 57.74943 * 1 2 3 26 26 H 1.09003 * 109.46916 * 177.74437 * 1 2 3 27 27 H 1.08998 * 110.50588 * 24.28022 * 4 2 1 28 28 H 1.08994 * 110.62859 * 261.62365 * 4 2 1 29 29 H 0.96996 * 120.00341 * 324.61968 * 7 5 4 30 30 H 1.09001 * 109.47130 * 89.99921 * 12 11 8 31 31 H 1.09000 * 109.46905 * 209.99947 * 12 11 8 32 32 H 1.08997 * 109.46691 * 329.99813 * 12 11 8 33 33 H 1.09003 * 109.46620 * 216.50876 * 13 11 8 34 34 H 1.08995 * 109.47600 * 336.50616 * 13 11 8 35 35 H 0.97003 * 119.99806 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.37147 * 94.85197 * 22 5 4 37 37 H 1.09001 * 110.37072 * 217.18887 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7728 1.2248 5 6 3.3194 -1.5027 0.6882 6 1 3.1988 -2.5825 0.7757 7 7 4.5184 -1.0592 1.4037 8 16 5.7380 -2.1335 1.7211 9 8 6.0085 -2.8061 0.4989 10 8 6.7256 -1.4160 2.4485 11 7 5.1300 -3.2732 2.7574 12 6 4.6027 -4.5347 2.2312 13 6 5.1195 -3.0199 4.2003 14 6 3.7670 -2.4951 4.6083 15 1 2.9685 -2.4386 3.8833 16 6 3.5491 -2.0870 5.9072 17 7 4.5214 -2.1561 6.7901 18 14 1.8724 -1.4371 6.4131 19 1 0.9583 -1.4616 5.2431 20 1 1.3165 -2.2901 7.4941 21 1 2.0098 -0.0424 6.9042 22 6 3.3902 -1.0840 -0.7971 23 8 2.0356 -0.7225 -1.1435 24 1 -0.3633 0.4785 0.9095 25 1 -0.3633 0.5484 -0.8692 26 1 -0.3633 -1.0269 -0.0404 27 1 1.3283 -1.4917 1.5775 28 1 2.3407 -0.0838 2.0240 29 1 4.5979 -0.1364 1.6916 30 1 5.4046 -5.2713 2.1819 31 1 3.8132 -4.9005 2.8878 32 1 4.1979 -4.3708 1.2325 33 1 5.3251 -3.9480 4.7336 34 1 5.8843 -2.2830 4.4455 35 1 4.3681 -1.8687 7.7037 36 1 4.0543 -0.2283 -0.9189 37 1 3.7289 -1.9187 -1.4109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517562000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:38 Heat of formation + Delta-G solvation = -126.164457 kcal Electronic energy + Delta-G solvation = -21273.289463 eV Core-core repulsion = 17984.385166 eV Total energy + Delta-G solvation = -3288.904297 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.58384 -36.67990 -35.55426 -35.27025 -34.66608 -32.54149 -32.07276 -29.06725 -27.83376 -25.93215 -25.13987 -22.36679 -21.89806 -20.93032 -19.10543 -17.39805 -16.95935 -16.47975 -16.44533 -15.61447 -15.39983 -15.21669 -14.72220 -14.28782 -13.55076 -13.38373 -13.29586 -12.83224 -12.39623 -12.31227 -12.28084 -12.18293 -11.78292 -11.75166 -11.55254 -11.37071 -11.20170 -11.18678 -11.01298 -10.85109 -10.65171 -10.56790 -10.16432 -9.85155 -9.81068 -9.18141 -8.55989 -8.10214 -6.16527 -4.23409 1.24205 3.18820 3.26634 3.28584 3.39869 3.93586 4.10918 4.30602 4.59778 4.71063 4.91123 4.97375 5.10701 5.17289 5.20374 5.34631 5.43887 5.57827 5.64885 5.69673 5.82294 5.94175 6.01673 6.04237 6.15696 6.16423 6.31228 6.50841 6.83417 7.16162 7.33174 7.40609 7.59587 7.80405 8.09739 8.82064 9.42773 10.91466 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013811 B = 0.008639 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.908405 B = 3240.177739 C = 4718.030679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.068 0.932 4 C -0.156 4.156 5 C 0.132 3.868 6 H 0.097 0.903 7 N -1.114 6.114 8 S 2.787 3.213 9 O -0.999 6.999 10 O -0.979 6.979 11 N -0.996 5.996 12 C 0.103 3.897 13 C 0.244 3.756 14 C -0.538 4.538 15 H 0.064 0.936 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.032 3.968 23 O -0.373 6.373 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.414 0.586 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.053 0.947 35 H 0.264 0.736 36 H 0.066 0.934 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.605 2.021 -11.252 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.086 0.914 4 C -0.195 4.195 5 C 0.023 3.977 6 H 0.115 0.885 7 N -0.872 5.872 8 S 2.795 3.205 9 O -0.982 6.982 10 O -0.963 6.963 11 N -0.839 5.839 12 C -0.044 4.044 13 C 0.122 3.878 14 C -0.577 4.577 15 H 0.082 0.918 16 C -0.141 4.141 17 N -0.527 5.527 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.047 4.047 23 O -0.292 6.292 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.248 0.752 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.796 1.825 -11.661 12.740 hybrid contribution -1.201 0.773 1.056 1.776 sum -5.997 2.598 -10.605 12.458 Atomic orbital electron populations 1.21802 0.93257 1.03005 1.02254 1.23006 0.95276 0.95513 0.85213 0.91397 1.23318 0.97244 1.00612 0.98368 1.21912 0.85124 0.99744 0.90916 0.88465 1.56069 1.34208 1.25094 1.71824 1.01717 0.73283 0.72874 0.72672 1.93548 1.84159 1.74909 1.45606 1.93596 1.56680 1.73027 1.73039 1.57602 1.78198 1.27949 1.20134 1.21284 0.99096 0.86024 0.97947 1.19227 0.97925 0.98100 0.72567 1.21580 0.97409 1.43206 0.95539 0.91803 1.24984 0.96982 0.95559 0.96530 1.69946 1.31800 1.47053 1.03908 0.86518 0.83993 0.78664 0.78664 1.19641 1.20960 1.20940 1.23967 0.84396 1.00877 0.95467 1.89119 1.27058 1.74712 1.38273 0.91077 0.92112 0.91662 0.89514 0.88978 0.75216 0.93628 0.90741 0.92787 0.94680 0.92891 0.92598 0.91598 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.52 37.16 0.35 -1.12 16 2 C 0.07 0.80 3.92 -25.95 -0.10 0.70 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.16 -2.05 6.39 -25.16 -0.16 -2.21 16 5 C 0.13 1.87 3.69 -66.36 -0.25 1.62 16 6 H 0.10 1.37 6.79 -51.93 -0.35 1.02 16 7 N -1.11 -17.47 5.51 -3.56 -0.02 -17.49 16 8 S 2.79 53.23 6.03 -107.50 -0.65 52.58 16 9 O -1.00 -19.53 16.80 -57.17 -0.96 -20.49 16 10 O -0.98 -22.14 16.80 -57.17 -0.96 -23.10 16 11 N -1.00 -19.89 3.23 -123.05 -0.40 -20.29 16 12 C 0.10 1.71 10.21 59.85 0.61 2.32 16 13 C 0.24 5.90 5.43 -5.19 -0.03 5.87 16 14 C -0.54 -13.56 9.37 -34.44 -0.32 -13.88 16 15 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -24.98 13.29 55.43 0.74 -24.25 16 18 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.03 0.42 7.35 37.93 0.28 0.70 16 23 O -0.37 -5.09 11.35 -35.23 -0.40 -5.49 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.14 7.87 -51.93 -0.41 0.73 16 28 H 0.09 1.23 7.83 -51.93 -0.41 0.82 16 29 H 0.41 5.88 8.73 -34.47 -0.30 5.58 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 32 H 0.05 0.78 6.56 -51.93 -0.34 0.44 16 33 H 0.04 0.88 8.12 -51.93 -0.42 0.46 16 34 H 0.05 1.42 6.97 -51.93 -0.36 1.06 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 37 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -31.29 319.19 -8.08 -39.37 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.51 Total: 3.76 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 0.29 Total: -4.44 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.32 Total: -62.03 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -2.32 Total: -49.08 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 53.23 SS G_CDS: -0.65 Total: 52.58 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.29 -8.08 -39.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517562000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.794 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds