Wall clock time and date at job start Tue Mar 31 2020 00:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.33335 * 2 1 4 4 C 1.54485 * 110.37097 * 122.25010 * 2 1 3 5 5 C 1.54506 * 104.05817 * 142.92127 * 4 2 1 6 6 H 1.09004 * 110.51231 * 241.35021 * 5 4 2 7 7 N 1.46500 * 110.50836 * 118.64753 * 5 4 2 8 8 S 1.65601 * 119.99996 * 144.61411 * 7 5 4 9 9 O 1.42101 * 106.40150 * 48.65990 * 8 7 5 10 10 O 1.42104 * 106.40390 * 181.58338 * 8 7 5 11 11 N 1.65604 * 107.21890 * 295.12199 * 8 7 5 12 12 C 1.46503 * 119.99964 * 95.31779 * 11 8 7 13 13 C 1.46503 * 119.99677 * 275.31758 * 11 8 7 14 14 C 1.50697 * 109.46962 * 96.51202 * 13 11 8 15 15 H 1.08001 * 120.00066 * 4.94656 * 14 13 11 16 16 C 1.37879 * 119.99790 * 184.94718 * 14 13 11 17 17 N 1.31513 * 119.99939 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99983 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47091 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47154 * 119.99708 * 18 16 14 21 21 H 1.48497 * 109.46615 * 239.99807 * 18 16 14 22 22 C 1.54477 * 104.06774 * 0.02562 * 5 4 2 23 23 O 1.44418 * 104.80193 * 336.01965 * 22 5 4 24 24 H 1.08998 * 109.46888 * 297.74911 * 1 2 3 25 25 H 1.09010 * 109.46816 * 57.74943 * 1 2 3 26 26 H 1.09003 * 109.46916 * 177.74437 * 1 2 3 27 27 H 1.08998 * 110.50588 * 24.28022 * 4 2 1 28 28 H 1.08994 * 110.62859 * 261.62365 * 4 2 1 29 29 H 0.96996 * 120.00341 * 324.61968 * 7 5 4 30 30 H 1.09001 * 109.47130 * 89.99921 * 12 11 8 31 31 H 1.09000 * 109.46905 * 209.99947 * 12 11 8 32 32 H 1.08997 * 109.46691 * 329.99813 * 12 11 8 33 33 H 1.09003 * 109.46620 * 216.50876 * 13 11 8 34 34 H 1.08995 * 109.47600 * 336.50616 * 13 11 8 35 35 H 0.97003 * 119.99806 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.37147 * 94.85197 * 22 5 4 37 37 H 1.09001 * 110.37072 * 217.18887 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7728 1.2248 5 6 3.3194 -1.5027 0.6882 6 1 3.1988 -2.5825 0.7757 7 7 4.5184 -1.0592 1.4037 8 16 5.7380 -2.1335 1.7211 9 8 6.0085 -2.8061 0.4989 10 8 6.7256 -1.4160 2.4485 11 7 5.1300 -3.2732 2.7574 12 6 4.6027 -4.5347 2.2312 13 6 5.1195 -3.0199 4.2003 14 6 3.7670 -2.4951 4.6083 15 1 2.9685 -2.4386 3.8833 16 6 3.5491 -2.0870 5.9072 17 7 4.5214 -2.1561 6.7901 18 14 1.8724 -1.4371 6.4131 19 1 0.9583 -1.4616 5.2431 20 1 1.3165 -2.2901 7.4941 21 1 2.0098 -0.0424 6.9042 22 6 3.3902 -1.0840 -0.7971 23 8 2.0356 -0.7225 -1.1435 24 1 -0.3633 0.4785 0.9095 25 1 -0.3633 0.5484 -0.8692 26 1 -0.3633 -1.0269 -0.0404 27 1 1.3283 -1.4917 1.5775 28 1 2.3407 -0.0838 2.0240 29 1 4.5979 -0.1364 1.6916 30 1 5.4046 -5.2713 2.1819 31 1 3.8132 -4.9005 2.8878 32 1 4.1979 -4.3708 1.2325 33 1 5.3251 -3.9480 4.7336 34 1 5.8843 -2.2830 4.4455 35 1 4.3681 -1.8687 7.7037 36 1 4.0543 -0.2283 -0.9189 37 1 3.7289 -1.9187 -1.4109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517562000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:38 Heat of formation + Delta-G solvation = -150.326638 kcal Electronic energy + Delta-G solvation = -21274.337214 eV Core-core repulsion = 17984.385166 eV Total energy + Delta-G solvation = -3289.952048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61122 -38.30212 -37.22688 -36.90770 -35.87517 -34.47403 -32.98783 -30.20300 -29.63590 -26.88659 -26.77055 -24.19356 -22.95771 -21.93602 -20.57104 -18.94267 -18.54219 -18.24985 -17.78138 -16.99547 -16.57523 -16.31450 -16.25534 -15.63845 -15.15542 -14.88667 -14.54131 -14.06409 -13.97241 -13.66493 -13.46213 -13.41588 -13.20146 -13.10217 -12.98483 -12.90691 -12.78974 -12.61507 -12.45503 -12.33935 -12.06873 -11.93100 -11.70113 -11.61797 -10.85393 -10.59320 -10.38828 -9.77607 -8.15810 -6.29708 -0.29298 1.43762 1.45679 1.56696 1.93801 2.43613 2.59672 2.96317 3.16561 3.43666 3.52586 3.73263 3.94492 4.04434 4.12232 4.23079 4.37297 4.52003 4.67738 4.70253 4.76311 4.83064 4.87644 5.04187 5.06691 5.13911 5.15079 5.28825 5.31358 5.47837 5.74143 5.83670 5.88188 6.11297 6.14821 6.83838 7.40924 8.92624 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013811 B = 0.008639 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.908405 B = 3240.177739 C = 4718.030679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 H 0.079 0.921 4 C -0.156 4.156 5 C 0.123 3.877 6 H 0.099 0.901 7 N -1.105 6.105 8 S 2.803 3.197 9 O -1.001 7.001 10 O -1.018 7.018 11 N -1.002 6.002 12 C 0.094 3.906 13 C 0.257 3.743 14 C -0.536 4.536 15 H 0.078 0.922 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.960 3.040 19 H -0.251 1.251 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.033 3.967 23 O -0.384 6.384 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.422 0.578 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.017 0.983 34 H 0.020 0.980 35 H 0.264 0.736 36 H 0.073 0.927 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.642 2.415 -12.424 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.009 3.991 3 H 0.097 0.903 4 C -0.195 4.195 5 C 0.015 3.985 6 H 0.117 0.883 7 N -0.866 5.866 8 S 2.811 3.189 9 O -0.985 6.985 10 O -1.003 7.003 11 N -0.844 5.844 12 C -0.051 4.051 13 C 0.133 3.867 14 C -0.575 4.575 15 H 0.096 0.904 16 C -0.192 4.192 17 N -0.572 5.572 18 Si 0.785 3.215 19 H -0.174 1.174 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.045 4.045 23 O -0.303 6.303 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.257 0.743 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.843 2.204 -12.868 14.740 hybrid contribution -0.546 0.627 1.347 1.583 sum -7.389 2.831 -11.521 13.977 Atomic orbital electron populations 1.21818 0.91875 1.03165 1.03283 1.23149 0.96407 0.95591 0.83978 0.90342 1.23327 0.96641 1.00647 0.98883 1.22133 0.84706 1.00091 0.91561 0.88331 1.55760 1.34221 1.24862 1.71768 1.01079 0.73112 0.72605 0.72137 1.93540 1.84440 1.75219 1.45265 1.93543 1.58864 1.73892 1.73956 1.57497 1.78714 1.29718 1.18433 1.21530 0.99659 0.84867 0.99066 1.18790 0.96832 0.96231 0.74827 1.21879 0.97808 1.42099 0.95696 0.90412 1.25865 1.00600 0.96005 0.96731 1.70087 1.34145 1.48639 1.04308 0.85475 0.79764 0.77549 0.78714 1.17433 1.21163 1.21101 1.23951 0.84622 1.01363 0.94611 1.89117 1.27099 1.75029 1.39014 0.89862 0.91326 0.91927 0.89346 0.89202 0.74267 0.92530 0.90497 0.90336 0.96451 0.96206 0.92679 0.90904 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.52 71.98 0.69 -1.82 16 2 C 0.07 1.39 3.92 31.10 0.12 1.51 16 3 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.16 -3.69 6.39 31.61 0.20 -3.49 16 5 C 0.12 3.22 3.69 46.01 0.17 3.39 16 6 H 0.10 2.55 6.79 -2.38 -0.02 2.53 16 7 N -1.10 -33.14 5.51 -165.17 -0.91 -34.05 16 8 S 2.80 105.38 6.03 -56.49 -0.34 105.04 16 9 O -1.00 -37.77 16.80 -128.00 -2.15 -39.92 16 10 O -1.02 -46.64 16.80 -128.00 -2.15 -48.79 16 11 N -1.00 -39.49 3.23 -543.22 -1.75 -41.24 16 12 C 0.09 2.98 10.21 127.77 1.30 4.28 16 13 C 0.26 12.61 5.43 85.63 0.46 13.07 16 14 C -0.54 -26.67 9.37 25.60 0.24 -26.43 16 15 H 0.08 3.58 7.81 -2.91 -0.02 3.56 16 16 C 0.01 0.37 5.46 84.66 0.46 0.83 16 17 N -0.93 -53.15 13.29 21.45 0.28 -52.86 16 18 Si 0.96 40.33 29.54 68.60 2.03 42.36 16 19 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 20 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 C 0.03 0.81 7.35 72.48 0.53 1.34 16 23 O -0.38 -9.54 11.35 -148.98 -1.69 -11.23 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 2.07 7.87 -2.39 -0.02 2.05 16 28 H 0.09 2.18 7.83 -2.39 -0.02 2.16 16 29 H 0.42 11.47 8.73 -96.75 -0.84 10.62 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 2.39 8.07 -2.39 -0.02 2.37 16 32 H 0.08 2.08 6.56 -2.39 -0.02 2.07 16 33 H 0.02 0.90 8.12 -2.39 -0.02 0.88 16 34 H 0.02 1.11 6.97 -2.39 -0.02 1.09 16 35 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.07 1.65 8.06 -2.39 -0.02 1.64 16 37 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -65.86 319.19 -2.28 -68.14 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.22 Total: 19.86 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 4.18 Total: -7.30 kcal Atomic # 7 Polarization: -125.78 SS G_CDS: -2.38 Total: -128.16 kcal Atomic # 8 Polarization: -93.95 SS G_CDS: -5.99 Total: -99.94 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Atomic # 16 Polarization: 105.38 SS G_CDS: -0.34 Total: 105.04 kcal Total: -65.86 -2.28 -68.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517562000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.191 kcal (2) G-P(sol) polarization free energy of solvation -65.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds