Wall clock time and date at job start Tue Mar 31 2020 00:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 110.41949 * 2 1 4 4 C 1.54479 * 110.37378 * 237.69217 * 2 1 3 5 5 C 1.54517 * 104.06037 * 217.18898 * 4 2 1 6 6 H 1.08996 * 110.50794 * 118.64514 * 5 4 2 7 7 N 1.46501 * 110.51023 * 241.21539 * 5 4 2 8 8 S 1.65599 * 119.99900 * 214.99993 * 7 5 4 9 9 O 1.42105 * 106.40033 * 178.54165 * 8 7 5 10 10 O 1.42092 * 106.40434 * 311.46379 * 8 7 5 11 11 N 1.65604 * 107.21576 * 65.00510 * 8 7 5 12 12 C 1.46496 * 120.00202 * 89.99841 * 11 8 7 13 13 C 1.46506 * 119.99720 * 269.99303 * 11 8 7 14 14 C 1.50701 * 109.46723 * 95.00308 * 13 11 8 15 15 H 1.08009 * 120.00071 * 359.97438 * 14 13 11 16 16 C 1.37873 * 119.99873 * 180.02562 * 14 13 11 17 17 N 1.31512 * 120.00457 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00077 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47427 * 89.99523 * 18 16 14 20 20 H 1.48504 * 109.47103 * 209.99923 * 18 16 14 21 21 H 1.48501 * 109.46806 * 329.99606 * 18 16 14 22 22 C 1.54481 * 104.06349 * 0.02562 * 5 4 2 23 23 O 1.44422 * 104.80535 * 23.97783 * 22 5 4 24 24 H 1.09001 * 109.47320 * 182.30787 * 1 2 3 25 25 H 1.09005 * 109.47541 * 302.30989 * 1 2 3 26 26 H 1.09005 * 109.47229 * 62.31049 * 1 2 3 27 27 H 1.08991 * 110.51153 * 98.54483 * 4 2 1 28 28 H 1.08995 * 110.50884 * 335.83266 * 4 2 1 29 29 H 0.96997 * 120.00071 * 35.00172 * 7 5 4 30 30 H 1.09005 * 109.47354 * 89.99926 * 12 11 8 31 31 H 1.09002 * 109.46789 * 209.99290 * 12 11 8 32 32 H 1.08993 * 109.47365 * 329.99980 * 12 11 8 33 33 H 1.08994 * 109.47465 * 214.99958 * 13 11 8 34 34 H 1.09002 * 109.46946 * 335.00791 * 13 11 8 35 35 H 0.97001 * 120.00894 * 179.97438 * 17 16 14 36 36 H 1.08995 * 110.37274 * 142.81171 * 22 5 4 37 37 H 1.08999 * 110.36722 * 265.03812 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0677 -0.7740 -1.2240 5 6 3.3178 -1.5056 -0.6858 6 1 3.1955 -2.5852 -0.7731 7 7 4.5177 -1.0666 -1.4025 8 16 5.7389 -2.1422 -1.7092 9 8 6.7286 -1.4286 -2.4378 10 8 6.0057 -2.8071 -0.4821 11 7 5.1349 -3.2885 -2.7405 12 6 5.2346 -3.0959 -4.1893 13 6 4.5009 -4.4954 -2.2039 14 6 3.0095 -4.2904 -2.1338 15 1 2.5772 -3.3546 -2.4562 16 6 2.1970 -5.2971 -1.6570 17 7 2.7233 -6.4364 -1.2638 18 14 0.3483 -5.0433 -1.5706 19 1 -0.2721 -5.4852 -2.8454 20 1 -0.2086 -5.8388 -0.4471 21 1 0.0560 -3.6041 -1.3507 22 6 3.3869 -1.0876 0.7998 23 8 2.0322 -0.7245 1.1444 24 1 -0.3634 -1.0268 0.0414 25 1 -0.3634 0.5493 0.8686 26 1 -0.3634 0.4776 -0.9100 27 1 2.3429 -0.0839 -2.0214 28 1 1.3276 -1.4919 -1.5772 29 1 4.5969 -0.1459 -1.6973 30 1 6.1689 -3.5264 -4.5497 31 1 4.3947 -3.5880 -4.6799 32 1 5.2144 -2.0300 -4.4164 33 1 4.7210 -5.3415 -2.8547 34 1 4.8875 -4.6952 -1.2046 35 1 2.1518 -7.1445 -0.9280 36 1 3.7237 -1.9228 1.4137 37 1 4.0534 -0.2340 0.9230 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517562002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:42 Heat of formation + Delta-G solvation = -125.519656 kcal Electronic energy + Delta-G solvation = -21638.944841 eV Core-core repulsion = 18350.068504 eV Total energy + Delta-G solvation = -3288.876337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.34058 -36.66595 -35.58141 -35.23587 -34.50246 -32.58243 -31.88915 -28.92357 -27.86445 -25.71488 -25.13707 -22.42368 -21.65010 -20.73613 -19.02437 -17.40718 -16.90077 -16.57836 -16.24688 -15.40699 -15.19088 -15.02390 -14.74924 -14.17947 -13.52428 -13.34417 -13.10923 -12.68899 -12.35646 -12.24042 -12.16332 -12.01720 -11.73390 -11.60963 -11.49603 -11.26865 -11.22937 -11.15300 -10.90649 -10.69563 -10.62294 -10.33537 -10.16629 -9.80886 -9.61036 -9.02354 -8.58383 -8.11120 -6.20829 -4.28621 1.26228 3.19987 3.26935 3.29008 3.47194 4.09945 4.19019 4.28260 4.86164 4.94480 5.00528 5.10839 5.18892 5.40938 5.47328 5.50330 5.57697 5.69455 5.79531 5.95501 6.01264 6.04879 6.14728 6.22781 6.26089 6.35355 6.49640 6.64490 7.07326 7.23786 7.30933 7.41189 7.59482 7.76092 8.04601 8.75999 9.37344 10.86363 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.011069 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.299100 B = 2529.060302 C = 4069.327729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.064 0.936 4 C -0.155 4.155 5 C 0.104 3.896 6 H 0.149 0.851 7 N -1.119 6.119 8 S 2.786 3.214 9 O -1.002 7.002 10 O -0.977 6.977 11 N -0.997 5.997 12 C 0.108 3.892 13 C 0.240 3.760 14 C -0.551 4.551 15 H 0.068 0.932 16 C 0.069 3.931 17 N -0.882 5.882 18 Si 0.889 3.111 19 H -0.280 1.280 20 H -0.284 1.284 21 H -0.268 1.268 22 C 0.033 3.967 23 O -0.371 6.371 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.405 0.595 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.053 0.947 35 H 0.266 0.734 36 H 0.102 0.898 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.617 11.102 -1.625 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.082 0.918 4 C -0.194 4.194 5 C -0.003 4.003 6 H 0.166 0.834 7 N -0.876 5.876 8 S 2.794 3.206 9 O -0.986 6.986 10 O -0.960 6.960 11 N -0.840 5.840 12 C -0.039 4.039 13 C 0.118 3.882 14 C -0.589 4.589 15 H 0.086 0.914 16 C -0.135 4.135 17 N -0.519 5.519 18 Si 0.716 3.284 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.192 1.192 22 C -0.045 4.045 23 O -0.289 6.289 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.237 0.763 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.901 10.675 -0.927 10.753 hybrid contribution -1.356 0.477 -0.513 1.526 sum -2.258 11.152 -1.440 11.469 Atomic orbital electron populations 1.21809 0.93556 1.03212 1.01872 1.22957 0.95142 0.95101 0.85745 0.91818 1.23285 0.98200 0.99954 0.97956 1.22727 0.83345 1.04197 0.90057 0.83373 1.56113 1.35213 1.24266 1.72053 1.01756 0.72835 0.72539 0.73506 1.93547 1.57310 1.73948 1.73835 1.93585 1.83675 1.74463 1.44278 1.57589 1.75737 1.35107 1.15519 1.21204 1.01555 1.00187 0.80960 1.19277 0.92136 0.81114 0.95682 1.21581 0.91935 1.01228 1.44205 0.91390 1.24964 0.98904 0.94949 0.94714 1.69923 1.35836 1.04712 1.41410 0.86645 0.85188 0.78747 0.77800 1.20621 1.20952 1.19216 1.23940 0.83925 1.00350 0.96329 1.89144 1.27378 1.74451 1.37939 0.91477 0.92194 0.91390 0.90304 0.89231 0.76314 0.93760 0.90802 0.92901 0.94291 0.92933 0.92370 0.87974 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.52 37.15 0.35 -1.46 16 2 C 0.07 0.95 3.92 -25.96 -0.10 0.85 16 3 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.15 -2.29 6.39 -25.16 -0.16 -2.45 16 5 C 0.10 1.79 3.31 -66.36 -0.22 1.57 16 6 H 0.15 3.06 4.49 -51.93 -0.23 2.83 16 7 N -1.12 -17.71 5.53 -3.55 -0.02 -17.73 16 8 S 2.79 53.45 6.02 -107.50 -0.65 52.81 16 9 O -1.00 -20.02 17.21 -57.17 -0.98 -21.01 16 10 O -0.98 -21.92 16.45 -57.17 -0.94 -22.86 16 11 N -1.00 -19.82 3.23 -123.05 -0.40 -20.22 16 12 C 0.11 1.79 10.31 59.84 0.62 2.40 16 13 C 0.24 5.70 5.30 -5.19 -0.03 5.67 16 14 C -0.55 -13.42 6.93 -34.44 -0.24 -13.66 16 15 H 0.07 1.57 6.97 -52.48 -0.37 1.20 16 16 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.88 -24.21 13.29 55.43 0.74 -23.48 16 18 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 C 0.03 0.55 7.36 37.93 0.28 0.83 16 23 O -0.37 -6.28 11.34 -35.23 -0.40 -6.68 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.97 7.83 -51.93 -0.41 0.57 16 28 H 0.09 1.45 7.87 -51.93 -0.41 1.04 16 29 H 0.40 5.14 8.72 -34.47 -0.30 4.84 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 33 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 37 H 0.06 0.85 8.06 -51.93 -0.42 0.44 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -30.15 314.40 -7.94 -38.09 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.41 Total: 6.19 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 0.40 Total: -4.56 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.32 Total: -61.42 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -2.32 Total: -50.54 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 53.45 SS G_CDS: -0.65 Total: 52.81 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.15 -7.94 -38.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517562002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.434 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds