Wall clock time and date at job start Tue Mar 31 2020 00:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 110.41949 * 2 1 4 4 C 1.54479 * 110.37378 * 237.69217 * 2 1 3 5 5 C 1.54517 * 104.06037 * 217.18898 * 4 2 1 6 6 H 1.08996 * 110.50794 * 118.64514 * 5 4 2 7 7 N 1.46501 * 110.51023 * 241.21539 * 5 4 2 8 8 S 1.65599 * 119.99900 * 214.99993 * 7 5 4 9 9 O 1.42105 * 106.40033 * 178.54165 * 8 7 5 10 10 O 1.42092 * 106.40434 * 311.46379 * 8 7 5 11 11 N 1.65604 * 107.21576 * 65.00510 * 8 7 5 12 12 C 1.46496 * 120.00202 * 89.99841 * 11 8 7 13 13 C 1.46506 * 119.99720 * 269.99303 * 11 8 7 14 14 C 1.50701 * 109.46723 * 95.00308 * 13 11 8 15 15 H 1.08009 * 120.00071 * 359.97438 * 14 13 11 16 16 C 1.37873 * 119.99873 * 180.02562 * 14 13 11 17 17 N 1.31512 * 120.00457 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00077 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47427 * 89.99523 * 18 16 14 20 20 H 1.48504 * 109.47103 * 209.99923 * 18 16 14 21 21 H 1.48501 * 109.46806 * 329.99606 * 18 16 14 22 22 C 1.54481 * 104.06349 * 0.02562 * 5 4 2 23 23 O 1.44422 * 104.80535 * 23.97783 * 22 5 4 24 24 H 1.09001 * 109.47320 * 182.30787 * 1 2 3 25 25 H 1.09005 * 109.47541 * 302.30989 * 1 2 3 26 26 H 1.09005 * 109.47229 * 62.31049 * 1 2 3 27 27 H 1.08991 * 110.51153 * 98.54483 * 4 2 1 28 28 H 1.08995 * 110.50884 * 335.83266 * 4 2 1 29 29 H 0.96997 * 120.00071 * 35.00172 * 7 5 4 30 30 H 1.09005 * 109.47354 * 89.99926 * 12 11 8 31 31 H 1.09002 * 109.46789 * 209.99290 * 12 11 8 32 32 H 1.08993 * 109.47365 * 329.99980 * 12 11 8 33 33 H 1.08994 * 109.47465 * 214.99958 * 13 11 8 34 34 H 1.09002 * 109.46946 * 335.00791 * 13 11 8 35 35 H 0.97001 * 120.00894 * 179.97438 * 17 16 14 36 36 H 1.08995 * 110.37274 * 142.81171 * 22 5 4 37 37 H 1.08999 * 110.36722 * 265.03812 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0677 -0.7740 -1.2240 5 6 3.3178 -1.5056 -0.6858 6 1 3.1955 -2.5852 -0.7731 7 7 4.5177 -1.0666 -1.4025 8 16 5.7389 -2.1422 -1.7092 9 8 6.7286 -1.4286 -2.4378 10 8 6.0057 -2.8071 -0.4821 11 7 5.1349 -3.2885 -2.7405 12 6 5.2346 -3.0959 -4.1893 13 6 4.5009 -4.4954 -2.2039 14 6 3.0095 -4.2904 -2.1338 15 1 2.5772 -3.3546 -2.4562 16 6 2.1970 -5.2971 -1.6570 17 7 2.7233 -6.4364 -1.2638 18 14 0.3483 -5.0433 -1.5706 19 1 -0.2721 -5.4852 -2.8454 20 1 -0.2086 -5.8388 -0.4471 21 1 0.0560 -3.6041 -1.3507 22 6 3.3869 -1.0876 0.7998 23 8 2.0322 -0.7245 1.1444 24 1 -0.3634 -1.0268 0.0414 25 1 -0.3634 0.5493 0.8686 26 1 -0.3634 0.4776 -0.9100 27 1 2.3429 -0.0839 -2.0214 28 1 1.3276 -1.4919 -1.5772 29 1 4.5969 -0.1459 -1.6973 30 1 6.1689 -3.5264 -4.5497 31 1 4.3947 -3.5880 -4.6799 32 1 5.2144 -2.0300 -4.4164 33 1 4.7210 -5.3415 -2.8547 34 1 4.8875 -4.6952 -1.2046 35 1 2.1518 -7.1445 -0.9280 36 1 3.7237 -1.9228 1.4137 37 1 4.0534 -0.2340 0.9230 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517562002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:41 Heat of formation + Delta-G solvation = -149.249724 kcal Electronic energy + Delta-G solvation = -21639.973854 eV Core-core repulsion = 18350.068504 eV Total energy + Delta-G solvation = -3289.905349 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.57121 -38.29604 -37.24635 -36.88922 -35.84705 -34.47707 -32.98338 -30.22143 -29.62469 -26.86501 -26.75900 -24.22774 -22.91630 -21.90952 -20.54794 -19.00455 -18.53510 -18.24466 -17.68435 -16.91231 -16.53570 -16.40369 -16.23820 -15.63382 -15.04806 -14.91856 -14.50746 -14.08414 -13.92199 -13.65810 -13.44569 -13.37515 -13.19350 -13.10180 -13.00489 -12.90939 -12.74476 -12.60476 -12.41630 -12.30804 -11.99816 -11.89354 -11.76728 -11.47372 -10.82993 -10.56266 -10.36118 -9.77626 -8.16906 -6.29489 -0.29250 1.43661 1.46577 1.54473 1.97076 2.42592 2.61410 2.98883 3.14338 3.45120 3.64023 3.82740 4.05638 4.10179 4.20640 4.27771 4.41421 4.54345 4.71329 4.73243 4.78005 4.86604 4.87256 5.03234 5.08628 5.15173 5.24448 5.30531 5.33497 5.49802 5.75009 5.86342 5.91273 6.09559 6.24923 6.82106 7.39719 8.90865 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.011069 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.299100 B = 2529.060302 C = 4069.327729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 H 0.092 0.908 4 C -0.150 4.150 5 C 0.100 3.900 6 H 0.113 0.887 7 N -1.099 6.099 8 S 2.802 3.198 9 O -1.006 7.006 10 O -1.014 7.014 11 N -1.002 6.002 12 C 0.098 3.902 13 C 0.253 3.747 14 C -0.540 4.540 15 H 0.083 0.917 16 C 0.017 3.983 17 N -0.925 5.925 18 Si 0.945 3.055 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.248 1.248 22 C 0.033 3.967 23 O -0.391 6.391 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.424 0.576 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.265 0.735 36 H 0.081 0.919 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 13.843 -2.700 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.006 3.994 3 H 0.110 0.890 4 C -0.189 4.189 5 C -0.008 4.008 6 H 0.130 0.870 7 N -0.862 5.862 8 S 2.809 3.191 9 O -0.990 6.990 10 O -0.997 6.997 11 N -0.844 5.844 12 C -0.047 4.047 13 C 0.129 3.871 14 C -0.579 4.579 15 H 0.101 0.899 16 C -0.184 4.184 17 N -0.564 5.564 18 Si 0.770 3.230 19 H -0.200 1.200 20 H -0.220 1.220 21 H -0.171 1.171 22 C -0.046 4.046 23 O -0.310 6.310 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.128 0.872 28 H 0.094 0.906 29 H 0.260 0.740 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.044 13.462 -2.038 13.767 hybrid contribution -0.937 -0.316 -0.191 1.007 sum -2.980 13.146 -2.229 13.662 Atomic orbital electron populations 1.21849 0.92404 1.02391 1.03730 1.23247 0.96161 0.95866 0.84114 0.89022 1.23285 0.96298 1.00082 0.99226 1.22566 0.84701 1.02571 0.90941 0.86958 1.55646 1.34077 1.24773 1.71682 1.01127 0.72949 0.72360 0.72644 1.93536 1.57869 1.73828 1.73802 1.93543 1.84505 1.75537 1.46131 1.57490 1.75519 1.34194 1.17200 1.21458 1.02255 1.02127 0.78861 1.18849 0.92292 0.82151 0.93764 1.21851 0.92071 1.01354 1.42605 0.89878 1.25754 1.03102 0.94774 0.94728 1.70057 1.37287 1.05786 1.43306 0.85739 0.80233 0.79523 0.77461 1.19999 1.21961 1.17149 1.23882 0.84592 1.00572 0.95513 1.89130 1.27325 1.75132 1.39449 0.93533 0.91191 0.88821 0.87235 0.90629 0.73984 0.92756 0.90615 0.90211 0.96126 0.96206 0.92635 0.90070 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.52 71.98 0.68 -2.46 16 2 C 0.06 1.55 3.92 31.09 0.12 1.68 16 3 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.15 -3.95 6.39 31.61 0.20 -3.75 16 5 C 0.10 3.28 3.31 46.01 0.15 3.43 16 6 H 0.11 4.61 4.49 -2.39 -0.01 4.60 16 7 N -1.10 -32.36 5.53 -165.16 -0.91 -33.27 16 8 S 2.80 104.97 6.02 -56.49 -0.34 104.63 16 9 O -1.01 -38.24 17.21 -128.00 -2.20 -40.44 16 10 O -1.01 -46.23 16.45 -128.00 -2.11 -48.34 16 11 N -1.00 -39.32 3.23 -543.22 -1.75 -41.07 16 12 C 0.10 3.09 10.31 127.77 1.32 4.41 16 13 C 0.25 12.30 5.30 85.63 0.45 12.75 16 14 C -0.54 -26.40 6.93 25.60 0.18 -26.22 16 15 H 0.08 3.73 6.97 -2.91 -0.02 3.71 16 16 C 0.02 0.87 5.46 84.65 0.46 1.33 16 17 N -0.93 -52.36 13.29 21.45 0.28 -52.08 16 18 Si 0.95 40.38 29.54 68.60 2.03 42.40 16 19 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 22 C 0.03 1.07 7.36 72.49 0.53 1.60 16 23 O -0.39 -12.59 11.34 -148.98 -1.69 -14.28 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.11 2.19 7.83 -2.39 -0.02 2.17 16 28 H 0.08 2.23 7.87 -2.39 -0.02 2.21 16 29 H 0.42 9.23 8.72 -96.75 -0.84 8.38 16 30 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.08 2.34 8.07 -2.39 -0.02 2.33 16 32 H 0.08 2.07 7.79 -2.39 -0.02 2.05 16 33 H 0.02 1.06 8.11 -2.39 -0.02 1.04 16 34 H 0.02 1.09 6.91 -2.39 -0.02 1.08 16 35 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.08 2.19 8.06 -2.39 -0.02 2.17 16 Total: -1.00 -65.72 314.40 -2.36 -68.08 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.23 Total: 21.59 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 4.10 Total: -7.23 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -2.38 Total: -126.42 kcal Atomic # 8 Polarization: -97.05 SS G_CDS: -6.00 Total: -103.05 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.40 kcal Atomic # 16 Polarization: 104.97 SS G_CDS: -0.34 Total: 104.63 kcal Total: -65.72 -2.36 -68.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517562002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.169 kcal (2) G-P(sol) polarization free energy of solvation -65.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds