Wall clock time and date at job start Tue Mar 31 2020 00:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 110.12161 * 2 1 4 4 C 1.53498 * 110.63275 * 238.72690 * 2 1 3 5 5 C 1.50936 * 105.34557 * 241.00949 * 4 2 1 6 6 O 1.21296 * 125.91590 * 179.58250 * 5 4 2 7 7 C 1.46821 * 108.17271 * 359.54734 * 5 4 2 8 8 C 1.39666 * 110.69450 * 0.23488 * 7 5 4 9 9 C 1.38169 * 119.93582 * 180.31837 * 8 7 5 10 10 F 1.35101 * 119.77773 * 179.69922 * 9 8 7 11 11 C 1.38701 * 120.44120 * 359.72478 * 9 8 7 12 12 C 1.38048 * 120.28371 * 359.97438 * 11 9 8 13 13 C 1.38497 * 120.13173 * 0.03020 * 12 11 9 14 14 O 1.35645 * 120.02946 * 179.97438 * 13 12 11 15 15 C 1.42901 * 116.99876 * 0.02562 * 14 13 12 16 16 C 1.52999 * 109.46675 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46854 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99953 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00175 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00030 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47500 * 89.99673 * 21 19 17 23 23 H 1.48506 * 109.46891 * 210.00149 * 21 19 17 24 24 H 1.48497 * 109.46864 * 329.99614 * 21 19 17 25 25 H 1.08997 * 109.47393 * 298.40727 * 1 2 3 26 26 H 1.09003 * 109.47380 * 58.41601 * 1 2 3 27 27 H 1.09005 * 109.46510 * 178.40933 * 1 2 3 28 28 H 1.09004 * 110.65193 * 121.84107 * 4 2 1 29 29 H 1.09005 * 109.88962 * 359.78032 * 4 2 1 30 30 H 1.08006 * 119.85896 * 180.02562 * 11 9 8 31 31 H 1.07997 * 119.93096 * 179.97438 * 12 11 9 32 32 H 1.08996 * 109.47352 * 299.99700 * 15 14 13 33 33 H 1.08999 * 109.47144 * 59.99724 * 15 14 13 34 34 H 1.08998 * 109.47781 * 300.00033 * 16 15 14 35 35 H 1.08999 * 109.47266 * 60.00158 * 16 15 14 36 36 H 0.96994 * 120.00250 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9050 1.0236 0.0000 4 6 2.0709 -0.7457 -1.2278 5 6 2.8718 -1.8989 -0.6739 6 8 3.4594 -2.7356 -1.3266 7 6 2.8173 -1.8322 0.7918 8 6 2.0489 -0.7427 1.2080 9 6 1.8763 -0.4956 2.5564 10 9 1.1374 0.5627 2.9554 11 6 2.4569 -1.3266 3.5030 12 6 3.2139 -2.4109 3.1069 13 6 3.3986 -2.6750 1.7599 14 8 4.1433 -3.7407 1.3730 15 6 4.7069 -4.5485 2.4083 16 6 5.5064 -5.6936 1.7834 17 6 6.1013 -6.5451 2.8752 18 1 5.9263 -6.2948 3.9111 19 6 6.8691 -7.6437 2.5517 20 7 7.0818 -7.9488 1.2902 21 14 7.6059 -8.6996 3.9051 22 1 6.6535 -9.7812 4.2631 23 1 8.8785 -9.2983 3.4283 24 1 7.8716 -7.8585 5.0997 25 1 -0.3634 0.4889 0.9039 26 1 -0.3634 0.5382 -0.8754 27 1 -0.3632 -1.0274 -0.0285 28 1 2.7099 -0.0935 -1.8231 29 1 1.2423 -1.1168 -1.8311 30 1 2.3155 -1.1249 4.5546 31 1 3.6638 -3.0539 3.8488 32 1 5.3665 -3.9392 3.0261 33 1 3.9073 -4.9584 3.0253 34 1 4.8465 -6.3028 1.1658 35 1 6.3060 -5.2840 1.1662 36 1 7.6222 -8.7214 1.0626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532873656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:44 Heat of formation + Delta-G solvation = -109.111487 kcal Electronic energy + Delta-G solvation = -20947.422657 eV Core-core repulsion = 17503.893919 eV Total energy + Delta-G solvation = -3443.528738 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.86555 -40.80982 -38.82928 -37.49841 -35.41990 -33.40799 -31.08589 -30.12303 -29.29515 -28.18532 -25.23243 -24.33125 -22.73965 -21.69292 -20.35652 -20.06341 -17.62359 -17.20827 -16.86646 -16.15087 -16.04690 -15.45286 -15.34511 -15.32141 -14.66103 -14.55262 -14.22356 -13.99696 -13.57114 -13.14818 -12.71394 -12.69103 -12.50845 -12.41197 -12.20933 -11.72187 -11.50830 -11.31947 -11.14563 -10.91855 -10.84952 -10.64903 -9.93827 -9.74363 -9.56499 -9.33419 -9.13465 -8.47163 -8.01333 -6.11659 -4.17502 0.50969 1.15050 2.37107 3.26051 3.31407 3.34150 3.51966 3.53001 3.79336 4.16884 4.23828 4.37665 4.47386 4.68867 4.74160 4.93945 5.02637 5.16233 5.24445 5.31267 5.41678 5.45881 5.64224 5.65720 5.72474 5.84728 5.89287 5.92622 5.94388 5.99185 6.15993 6.54892 6.60418 7.41613 7.60628 7.63655 7.68951 7.93549 8.19215 8.88023 9.47011 10.99708 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027754 B = 0.003886 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.621029 B = 7202.752885 C = 8105.992096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 H 0.098 0.902 4 C -0.167 4.167 5 C 0.407 3.593 6 O -0.423 6.423 7 C -0.212 4.212 8 C -0.044 4.044 9 C 0.044 3.956 10 F -0.142 7.142 11 C -0.071 4.071 12 C -0.204 4.204 13 C 0.207 3.793 14 O -0.290 6.290 15 C 0.057 3.943 16 C 0.026 3.974 17 C -0.529 4.529 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.887 5.887 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.899 17.698 0.418 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 H 0.116 0.884 4 C -0.204 4.204 5 C 0.283 3.717 6 O -0.296 6.296 7 C -0.214 4.214 8 C -0.045 4.045 9 C 0.025 3.975 10 F -0.121 7.121 11 C -0.090 4.090 12 C -0.223 4.223 13 C 0.156 3.844 14 O -0.201 6.201 15 C -0.016 4.016 16 C -0.011 4.011 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.525 5.525 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.450 17.058 -0.243 21.119 hybrid contribution 0.334 -0.442 1.258 1.375 sum -12.116 16.616 1.015 20.589 Atomic orbital electron populations 1.21838 0.92766 1.02770 1.02756 1.20318 0.96910 0.99404 0.89866 0.88404 1.22417 1.01665 0.97762 0.98546 1.22055 0.77955 0.84319 0.87365 1.90639 1.35932 1.36274 1.66754 1.20232 1.06425 0.98708 0.96011 1.20298 0.95840 0.95430 0.92950 1.16833 1.00506 0.89366 0.90837 1.91457 1.75049 1.54320 1.91305 1.21051 0.95079 0.93208 0.99669 1.21198 1.04983 1.01028 0.95065 1.19357 0.87383 0.86223 0.91389 1.86313 1.60424 1.35279 1.38045 1.23557 0.96335 0.92445 0.89277 1.19133 0.94810 0.90160 0.97044 1.20940 1.32348 1.11020 0.92438 0.92326 1.24993 0.96090 0.97404 0.95643 1.69981 1.38640 1.27326 1.16512 0.86480 0.78666 0.80456 0.81731 1.20478 1.21017 1.19759 0.91644 0.91500 0.92010 0.87273 0.87273 0.83915 0.83265 0.92561 0.92574 0.95192 0.95180 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.02 37.16 0.34 -0.77 16 2 C -0.05 -0.43 3.49 -91.37 -0.32 -0.75 16 3 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 4 C -0.17 -1.63 6.54 -27.51 -0.18 -1.80 16 5 C 0.41 6.24 7.71 -30.72 -0.24 6.01 16 6 O -0.42 -8.33 17.74 5.54 0.10 -8.24 16 7 C -0.21 -3.26 6.10 -104.88 -0.64 -3.90 16 8 C -0.04 -0.54 5.49 -103.97 -0.57 -1.11 16 9 C 0.04 0.53 7.28 -39.44 -0.29 0.25 16 10 F -0.14 -1.66 16.72 2.25 0.04 -1.62 16 11 C -0.07 -0.84 10.01 -39.48 -0.40 -1.23 16 12 C -0.20 -2.85 9.01 -39.56 -0.36 -3.21 16 13 C 0.21 3.52 6.75 -38.47 -0.26 3.26 16 14 O -0.29 -6.04 9.81 -18.63 -0.18 -6.22 16 15 C 0.06 1.20 4.68 37.16 0.17 1.37 16 16 C 0.03 0.68 5.34 -27.88 -0.15 0.53 16 17 C -0.53 -14.63 9.11 -34.44 -0.31 -14.95 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 21 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H 0.06 0.52 7.61 -51.93 -0.40 0.12 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.11 0.89 7.69 -51.93 -0.40 0.49 16 30 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 31 H 0.15 1.94 6.27 -52.49 -0.33 1.61 16 32 H 0.06 1.08 7.65 -51.93 -0.40 0.69 16 33 H 0.06 1.08 7.66 -51.93 -0.40 0.68 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -32.21 314.24 -7.31 -39.52 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -4.42 Total: -3.82 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -3.30 Total: -14.68 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.80 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.08 Total: -14.46 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.21 -7.31 -39.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532873656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.590 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds