Wall clock time and date at job start Tue Mar 31 2020 00:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 110.12161 * 2 1 4 4 C 1.53498 * 110.63275 * 238.72690 * 2 1 3 5 5 C 1.50936 * 105.34557 * 241.00949 * 4 2 1 6 6 O 1.21296 * 125.91590 * 179.58250 * 5 4 2 7 7 C 1.46821 * 108.17271 * 359.54734 * 5 4 2 8 8 C 1.39666 * 110.69450 * 0.23488 * 7 5 4 9 9 C 1.38169 * 119.93582 * 180.31837 * 8 7 5 10 10 F 1.35101 * 119.77773 * 179.69922 * 9 8 7 11 11 C 1.38701 * 120.44120 * 359.72478 * 9 8 7 12 12 C 1.38048 * 120.28371 * 359.97438 * 11 9 8 13 13 C 1.38497 * 120.13173 * 0.03020 * 12 11 9 14 14 O 1.35645 * 120.02946 * 179.97438 * 13 12 11 15 15 C 1.42901 * 116.99876 * 0.02562 * 14 13 12 16 16 C 1.52999 * 109.46675 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46854 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99953 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00175 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00030 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47500 * 89.99673 * 21 19 17 23 23 H 1.48506 * 109.46891 * 210.00149 * 21 19 17 24 24 H 1.48497 * 109.46864 * 329.99614 * 21 19 17 25 25 H 1.08997 * 109.47393 * 298.40727 * 1 2 3 26 26 H 1.09003 * 109.47380 * 58.41601 * 1 2 3 27 27 H 1.09005 * 109.46510 * 178.40933 * 1 2 3 28 28 H 1.09004 * 110.65193 * 121.84107 * 4 2 1 29 29 H 1.09005 * 109.88962 * 359.78032 * 4 2 1 30 30 H 1.08006 * 119.85896 * 180.02562 * 11 9 8 31 31 H 1.07997 * 119.93096 * 179.97438 * 12 11 9 32 32 H 1.08996 * 109.47352 * 299.99700 * 15 14 13 33 33 H 1.08999 * 109.47144 * 59.99724 * 15 14 13 34 34 H 1.08998 * 109.47781 * 300.00033 * 16 15 14 35 35 H 1.08999 * 109.47266 * 60.00158 * 16 15 14 36 36 H 0.96994 * 120.00250 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9050 1.0236 0.0000 4 6 2.0709 -0.7457 -1.2278 5 6 2.8718 -1.8989 -0.6739 6 8 3.4594 -2.7356 -1.3266 7 6 2.8173 -1.8322 0.7918 8 6 2.0489 -0.7427 1.2080 9 6 1.8763 -0.4956 2.5564 10 9 1.1374 0.5627 2.9554 11 6 2.4569 -1.3266 3.5030 12 6 3.2139 -2.4109 3.1069 13 6 3.3986 -2.6750 1.7599 14 8 4.1433 -3.7407 1.3730 15 6 4.7069 -4.5485 2.4083 16 6 5.5064 -5.6936 1.7834 17 6 6.1013 -6.5451 2.8752 18 1 5.9263 -6.2948 3.9111 19 6 6.8691 -7.6437 2.5517 20 7 7.0818 -7.9488 1.2902 21 14 7.6059 -8.6996 3.9051 22 1 6.6535 -9.7812 4.2631 23 1 8.8785 -9.2983 3.4283 24 1 7.8716 -7.8585 5.0997 25 1 -0.3634 0.4889 0.9039 26 1 -0.3634 0.5382 -0.8754 27 1 -0.3632 -1.0274 -0.0285 28 1 2.7099 -0.0935 -1.8231 29 1 1.2423 -1.1168 -1.8311 30 1 2.3155 -1.1249 4.5546 31 1 3.6638 -3.0539 3.8488 32 1 5.3665 -3.9392 3.0261 33 1 3.9073 -4.9584 3.0253 34 1 4.8465 -6.3028 1.1658 35 1 6.3060 -5.2840 1.1662 36 1 7.6222 -8.7214 1.0626 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532873656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:43 Heat of formation + Delta-G solvation = -128.272279 kcal Electronic energy + Delta-G solvation = -20948.253531 eV Core-core repulsion = 17503.893919 eV Total energy + Delta-G solvation = -3444.359612 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.83018 -41.93523 -40.16954 -38.73462 -36.46003 -35.46648 -32.64369 -31.46978 -30.38270 -29.17482 -27.07213 -25.37908 -23.94589 -23.19182 -21.62797 -21.17755 -19.10384 -18.30771 -18.08294 -17.92878 -17.28652 -16.71193 -16.61594 -16.43180 -16.27218 -15.65302 -15.54356 -15.01242 -14.48626 -14.36008 -14.26914 -14.18277 -13.83082 -13.50369 -13.34512 -13.03190 -12.87121 -12.63810 -12.47724 -12.22408 -12.18952 -11.90935 -11.66344 -11.57746 -11.44513 -10.74029 -10.64569 -10.17649 -9.20409 -8.27797 -6.42991 -0.57977 0.05615 1.25471 1.40330 1.43222 1.54285 2.11102 2.42916 2.43398 2.80742 3.06637 3.18144 3.28852 3.58689 3.74311 3.87133 3.99848 4.06768 4.20078 4.22175 4.35489 4.45588 4.59306 4.65937 4.72605 4.83166 4.83755 4.91378 5.03112 5.08400 5.16160 5.28801 5.35490 5.40871 5.57158 5.69212 6.01856 6.32356 6.49615 6.72502 7.27863 8.85623 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027754 B = 0.003886 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.621029 B = 7202.752885 C = 8105.992096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 H 0.125 0.875 4 C -0.154 4.154 5 C 0.396 3.604 6 O -0.486 6.486 7 C -0.241 4.241 8 C -0.033 4.033 9 C 0.050 3.950 10 F -0.133 7.133 11 C -0.057 4.057 12 C -0.206 4.206 13 C 0.168 3.832 14 O -0.327 6.327 15 C 0.076 3.924 16 C 0.028 3.972 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.980 3.020 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.255 1.255 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.179 0.821 31 H 0.158 0.842 32 H 0.073 0.927 33 H 0.073 0.927 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.439 19.986 2.535 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.062 4.062 3 H 0.143 0.857 4 C -0.190 4.190 5 C 0.277 3.723 6 O -0.364 6.364 7 C -0.243 4.243 8 C -0.034 4.034 9 C 0.030 3.970 10 F -0.112 7.112 11 C -0.075 4.075 12 C -0.225 4.225 13 C 0.120 3.880 14 O -0.239 6.239 15 C 0.002 3.998 16 C -0.010 4.010 17 C -0.583 4.583 18 H 0.095 0.905 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.803 3.197 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.179 1.179 25 H 0.085 0.915 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.197 0.803 31 H 0.175 0.825 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.011 0.989 35 H 0.012 0.988 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.029 19.398 1.899 24.014 hybrid contribution 0.704 -0.999 0.587 1.356 sum -13.325 18.399 2.486 22.853 Atomic orbital electron populations 1.21847 0.91152 1.02690 1.04131 1.20511 0.98037 0.99997 0.87645 0.85701 1.22491 1.01671 0.95630 0.99243 1.23001 0.76966 0.84681 0.87691 1.90610 1.38935 1.39032 1.67812 1.20588 1.07571 0.99806 0.96301 1.20647 0.94252 0.94245 0.94305 1.16916 0.99931 0.89318 0.90807 1.91491 1.74707 1.53806 1.91168 1.21397 0.93091 0.91574 1.01471 1.21303 1.05446 1.01986 0.93726 1.19811 0.88663 0.86084 0.93454 1.86220 1.62189 1.37128 1.38384 1.23102 0.96553 0.91304 0.88823 1.18962 0.93793 0.91774 0.96444 1.21400 1.32244 1.11284 0.93373 0.90466 1.26113 0.96484 0.99010 0.98316 1.70148 1.39665 1.28176 1.19269 0.85231 0.77564 0.78423 0.78505 1.19514 1.20869 1.17910 0.91534 0.88830 0.92936 0.84754 0.85178 0.80350 0.82454 0.90911 0.90919 0.98854 0.98838 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.02 71.98 0.65 -1.00 16 2 C -0.04 -0.67 3.49 -11.28 -0.04 -0.71 16 3 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 4 C -0.15 -2.68 6.54 30.09 0.20 -2.48 16 5 C 0.40 12.51 7.71 28.01 0.22 12.73 16 6 O -0.49 -20.62 17.74 -3.08 -0.05 -20.67 16 7 C -0.24 -7.48 6.10 -20.03 -0.12 -7.60 16 8 C -0.03 -0.75 5.49 -19.44 -0.11 -0.86 16 9 C 0.05 1.06 7.28 22.36 0.16 1.22 16 10 F -0.13 -2.56 16.72 44.97 0.75 -1.81 16 11 C -0.06 -1.17 10.01 22.34 0.22 -0.95 16 12 C -0.21 -5.55 9.01 22.29 0.20 -5.35 16 13 C 0.17 5.89 6.75 22.99 0.16 6.04 16 14 O -0.33 -14.52 9.81 -89.59 -0.88 -15.40 16 15 C 0.08 3.30 4.68 71.98 0.34 3.64 16 16 C 0.03 1.55 5.34 29.85 0.16 1.70 16 17 C -0.55 -30.85 9.11 25.60 0.23 -30.61 16 18 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 19 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 20 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 21 Si 0.98 43.56 29.54 68.60 2.03 45.59 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 25 H 0.07 0.79 7.61 -2.39 -0.02 0.78 16 26 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.13 1.78 7.69 -2.38 -0.02 1.76 16 30 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.16 3.89 6.27 -2.91 -0.02 3.87 16 32 H 0.07 2.85 7.65 -2.39 -0.02 2.83 16 33 H 0.07 2.85 7.66 -2.39 -0.02 2.83 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -75.75 314.24 5.95 -69.80 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 1.10 Total: 4.15 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 2.73 Total: -23.83 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.28 Total: -57.83 kcal Atomic # 8 Polarization: -35.14 SS G_CDS: -0.93 Total: -36.07 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.75 Total: -1.81 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -75.75 5.95 -69.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532873656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.477 kcal (2) G-P(sol) polarization free energy of solvation -75.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds