Wall clock time and date at job start Tue Mar 31 2020 00:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 110.07818 * 2 1 4 4 C 1.53489 * 110.14909 * 121.59223 * 2 1 3 5 5 C 1.50954 * 105.34094 * 119.22614 * 4 2 1 6 6 O 1.21301 * 125.90723 * 179.97438 * 5 4 2 7 7 C 1.46816 * 108.17524 * 359.77628 * 5 4 2 8 8 C 1.39657 * 110.69083 * 0.38772 * 7 5 4 9 9 C 1.38173 * 119.94317 * 179.81379 * 8 7 5 10 10 F 1.35102 * 119.78416 * 179.76771 * 9 8 7 11 11 C 1.38705 * 120.43673 * 359.74545 * 9 8 7 12 12 C 1.38050 * 120.28205 * 359.97438 * 11 9 8 13 13 C 1.38502 * 120.13265 * 0.02562 * 12 11 9 14 14 O 1.35646 * 120.02928 * 179.97438 * 13 12 11 15 15 C 1.42901 * 116.99545 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.46502 * 180.02562 * 15 14 13 17 17 C 1.50708 * 109.46973 * 179.97438 * 16 15 14 18 18 H 1.07991 * 119.99789 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00008 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00089 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 H 1.09002 * 109.46963 * 181.55244 * 1 2 3 26 26 H 1.09004 * 109.46832 * 301.55529 * 1 2 3 27 27 H 1.09002 * 109.47288 * 61.55373 * 1 2 3 28 28 H 1.09003 * 110.27292 * 238.18810 * 4 2 1 29 29 H 1.08995 * 110.27481 * 0.16444 * 4 2 1 30 30 H 1.08000 * 119.85996 * 180.02562 * 11 9 8 31 31 H 1.07994 * 119.93394 * 179.97438 * 12 11 9 32 32 H 1.08996 * 109.47186 * 60.00346 * 15 14 13 33 33 H 1.08996 * 109.47106 * 299.99290 * 15 14 13 34 34 H 1.08994 * 109.48028 * 59.99932 * 16 15 14 35 35 H 1.09000 * 109.47206 * 299.99786 * 16 15 14 36 36 H 0.96997 * 119.99848 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9042 1.0238 0.0000 4 6 2.0587 -0.7549 1.2274 5 6 2.8635 -1.9052 0.6727 6 8 3.4504 -2.7427 1.3250 7 6 2.8090 -1.8375 -0.7929 8 6 2.0489 -0.7421 -1.2084 9 6 1.8753 -0.4946 -2.5566 10 9 1.1354 0.5633 -2.9550 11 6 2.4561 -1.3249 -3.5039 12 6 3.2149 -2.4081 -3.1085 13 6 3.4004 -2.6726 -1.7617 14 8 4.1461 -3.7379 -1.3755 15 6 4.7107 -4.5442 -2.4114 16 6 5.5112 -5.6891 -1.7874 17 6 6.1062 -6.5398 -2.8798 18 1 5.9313 -6.2888 -3.9155 19 6 6.8748 -7.6381 -2.5570 20 7 7.3944 -8.3802 -3.5103 21 14 7.1779 -8.0719 -0.7655 22 1 8.4054 -7.3841 -0.2905 23 1 7.3515 -9.5409 -0.6344 24 1 6.0179 -7.6356 0.0526 25 1 -0.3633 -1.0273 0.0278 26 1 -0.3633 0.5378 0.8758 27 1 -0.3634 0.4895 -0.9036 28 1 2.6948 -0.1032 1.8265 29 1 1.2290 -1.1276 1.8279 30 1 2.3147 -1.1225 -4.5553 31 1 3.6642 -3.0511 -3.8508 32 1 5.3698 -3.9337 -3.0285 33 1 3.9116 -4.9545 -3.0288 34 1 4.8519 -6.2995 -1.1704 35 1 6.3102 -5.2792 -1.1696 36 1 7.9348 -9.1530 -3.2831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532873657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:47 Heat of formation + Delta-G solvation = -105.759132 kcal Electronic energy + Delta-G solvation = -21008.734271 eV Core-core repulsion = 17565.350902 eV Total energy + Delta-G solvation = -3443.383369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.91045 -40.88533 -38.92946 -37.58366 -35.49493 -33.38881 -31.27084 -30.42554 -29.38364 -28.28921 -25.44647 -24.36974 -22.76016 -21.51602 -20.36002 -20.09915 -17.77600 -17.30046 -16.95698 -16.48151 -16.14445 -15.53597 -15.46056 -15.37635 -14.65535 -14.41164 -14.22870 -14.06078 -13.62377 -13.22459 -12.88894 -12.84430 -12.69265 -12.52403 -12.28758 -11.84886 -11.57589 -11.45578 -11.25143 -11.04639 -10.80503 -10.28946 -10.06358 -9.86430 -9.65497 -9.38923 -9.19293 -8.64854 -8.08999 -6.16608 -4.18205 0.44423 1.08744 2.29647 3.28780 3.35760 3.41310 3.43610 3.45831 3.72770 4.11301 4.18029 4.37955 4.41299 4.63894 4.68141 4.88142 4.96753 5.11177 5.17887 5.24923 5.36038 5.40533 5.58832 5.60530 5.65832 5.73890 5.77378 5.87744 5.89122 5.94460 6.09075 6.34412 6.52312 6.99901 7.18111 7.53548 7.55353 7.67381 8.34038 8.82889 9.43750 10.95636 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026214 B = 0.004216 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.874979 B = 6640.120301 C = 7604.602155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 H 0.099 0.901 4 C -0.166 4.166 5 C 0.409 3.591 6 O -0.426 6.426 7 C -0.212 4.212 8 C -0.044 4.044 9 C 0.046 3.954 10 F -0.142 7.142 11 C -0.070 4.070 12 C -0.202 4.202 13 C 0.206 3.794 14 O -0.294 6.294 15 C 0.065 3.935 16 C -0.009 4.009 17 C -0.529 4.529 18 H 0.075 0.925 19 C 0.074 3.926 20 N -0.897 5.897 21 Si 0.879 3.121 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.262 1.262 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.025 0.975 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.893 19.034 4.719 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 H 0.117 0.883 4 C -0.204 4.204 5 C 0.285 3.715 6 O -0.300 6.300 7 C -0.214 4.214 8 C -0.045 4.045 9 C 0.027 3.973 10 F -0.120 7.120 11 C -0.089 4.089 12 C -0.221 4.221 13 C 0.156 3.844 14 O -0.205 6.205 15 C -0.009 4.009 16 C -0.046 4.046 17 C -0.567 4.567 18 H 0.093 0.907 19 C -0.128 4.128 20 N -0.535 5.535 21 Si 0.705 3.295 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.186 1.186 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.429 18.359 5.217 23.337 hybrid contribution 0.173 -0.142 0.222 0.315 sum -13.256 18.217 5.438 23.177 Atomic orbital electron populations 1.21854 0.92770 1.02778 1.02800 1.20329 0.96998 0.99368 0.89808 0.88287 1.22417 1.01714 0.97684 0.98570 1.22067 0.77850 0.84237 0.87368 1.90623 1.36220 1.36295 1.66838 1.20211 1.06443 0.98767 0.95945 1.20299 0.95944 0.95314 0.92979 1.16849 1.00322 0.89324 0.90832 1.91463 1.74933 1.54331 1.91318 1.21075 0.94929 0.93146 0.99766 1.21222 1.04808 1.01034 0.95037 1.19305 0.87448 0.86188 0.91435 1.86260 1.60664 1.35581 1.38024 1.23302 0.96549 0.92010 0.89015 1.19592 0.95195 0.92000 0.97820 1.20805 1.32016 1.10437 0.93402 0.90696 1.24909 0.94748 0.95597 0.97581 1.69886 1.33913 1.17245 1.32425 0.86783 0.79580 0.77644 0.85481 1.19976 1.21107 1.18611 0.92007 0.91481 0.91632 0.87325 0.87178 0.83787 0.83109 0.91950 0.91929 0.95191 0.95628 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.99 37.16 0.33 -0.72 16 2 C -0.05 -0.41 3.52 -91.37 -0.32 -0.73 16 3 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 4 C -0.17 -1.52 6.51 -27.51 -0.18 -1.70 16 5 C 0.41 5.94 7.71 -30.72 -0.24 5.71 16 6 O -0.43 -7.98 17.74 5.54 0.10 -7.88 16 7 C -0.21 -3.11 6.10 -104.89 -0.64 -3.75 16 8 C -0.04 -0.52 5.49 -103.97 -0.57 -1.09 16 9 C 0.05 0.54 7.28 -39.43 -0.29 0.25 16 10 F -0.14 -1.60 16.71 2.25 0.04 -1.56 16 11 C -0.07 -0.80 10.01 -39.48 -0.40 -1.19 16 12 C -0.20 -2.73 9.01 -39.55 -0.36 -3.09 16 13 C 0.21 3.35 6.75 -38.47 -0.26 3.09 16 14 O -0.29 -5.79 9.81 -18.64 -0.18 -5.98 16 15 C 0.06 1.29 4.67 37.16 0.17 1.47 16 16 C -0.01 -0.21 4.41 -27.88 -0.12 -0.33 16 17 C -0.53 -14.74 9.66 -34.44 -0.33 -15.08 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 20 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 21 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.50 7.61 -51.93 -0.40 0.10 16 28 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.11 0.83 7.68 -51.93 -0.40 0.43 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.15 1.91 6.27 -52.49 -0.33 1.58 16 32 H 0.06 1.16 7.66 -51.93 -0.40 0.76 16 33 H 0.06 1.16 7.65 -51.93 -0.40 0.77 16 34 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 35 H 0.03 0.63 7.57 -51.93 -0.39 0.23 16 36 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -32.32 310.60 -6.94 -39.26 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -4.38 Total: -4.19 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -3.29 Total: -15.12 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.33 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.08 Total: -13.85 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.32 -6.94 -39.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532873657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.501 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds