Wall clock time and date at job start Tue Mar 31 2020 00:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 110.07818 * 2 1 4 4 C 1.53489 * 110.14909 * 121.59223 * 2 1 3 5 5 C 1.50954 * 105.34094 * 119.22614 * 4 2 1 6 6 O 1.21301 * 125.90723 * 179.97438 * 5 4 2 7 7 C 1.46816 * 108.17524 * 359.77628 * 5 4 2 8 8 C 1.39657 * 110.69083 * 0.38772 * 7 5 4 9 9 C 1.38173 * 119.94317 * 179.81379 * 8 7 5 10 10 F 1.35102 * 119.78416 * 179.76771 * 9 8 7 11 11 C 1.38705 * 120.43673 * 359.74545 * 9 8 7 12 12 C 1.38050 * 120.28205 * 359.97438 * 11 9 8 13 13 C 1.38502 * 120.13265 * 0.02562 * 12 11 9 14 14 O 1.35646 * 120.02928 * 179.97438 * 13 12 11 15 15 C 1.42901 * 116.99545 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.46502 * 180.02562 * 15 14 13 17 17 C 1.50708 * 109.46973 * 179.97438 * 16 15 14 18 18 H 1.07991 * 119.99789 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00008 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00089 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 H 1.09002 * 109.46963 * 181.55244 * 1 2 3 26 26 H 1.09004 * 109.46832 * 301.55529 * 1 2 3 27 27 H 1.09002 * 109.47288 * 61.55373 * 1 2 3 28 28 H 1.09003 * 110.27292 * 238.18810 * 4 2 1 29 29 H 1.08995 * 110.27481 * 0.16444 * 4 2 1 30 30 H 1.08000 * 119.85996 * 180.02562 * 11 9 8 31 31 H 1.07994 * 119.93394 * 179.97438 * 12 11 9 32 32 H 1.08996 * 109.47186 * 60.00346 * 15 14 13 33 33 H 1.08996 * 109.47106 * 299.99290 * 15 14 13 34 34 H 1.08994 * 109.48028 * 59.99932 * 16 15 14 35 35 H 1.09000 * 109.47206 * 299.99786 * 16 15 14 36 36 H 0.96997 * 119.99848 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9042 1.0238 0.0000 4 6 2.0587 -0.7549 1.2274 5 6 2.8635 -1.9052 0.6727 6 8 3.4504 -2.7427 1.3250 7 6 2.8090 -1.8375 -0.7929 8 6 2.0489 -0.7421 -1.2084 9 6 1.8753 -0.4946 -2.5566 10 9 1.1354 0.5633 -2.9550 11 6 2.4561 -1.3249 -3.5039 12 6 3.2149 -2.4081 -3.1085 13 6 3.4004 -2.6726 -1.7617 14 8 4.1461 -3.7379 -1.3755 15 6 4.7107 -4.5442 -2.4114 16 6 5.5112 -5.6891 -1.7874 17 6 6.1062 -6.5398 -2.8798 18 1 5.9313 -6.2888 -3.9155 19 6 6.8748 -7.6381 -2.5570 20 7 7.3944 -8.3802 -3.5103 21 14 7.1779 -8.0719 -0.7655 22 1 8.4054 -7.3841 -0.2905 23 1 7.3515 -9.5409 -0.6344 24 1 6.0179 -7.6356 0.0526 25 1 -0.3633 -1.0273 0.0278 26 1 -0.3633 0.5378 0.8758 27 1 -0.3634 0.4895 -0.9036 28 1 2.6948 -0.1032 1.8265 29 1 1.2290 -1.1276 1.8279 30 1 2.3147 -1.1225 -4.5553 31 1 3.6642 -3.0511 -3.8508 32 1 5.3698 -3.9337 -3.0285 33 1 3.9116 -4.9545 -3.0288 34 1 4.8519 -6.2995 -1.1704 35 1 6.3102 -5.2792 -1.1696 36 1 7.9348 -9.1530 -3.2831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532873657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:46 Heat of formation + Delta-G solvation = -125.019533 kcal Electronic energy + Delta-G solvation = -21009.569465 eV Core-core repulsion = 17565.350902 eV Total energy + Delta-G solvation = -3444.218563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.84047 -41.94722 -40.18607 -38.74045 -36.47499 -35.42791 -32.98174 -31.58843 -30.40376 -29.20466 -27.18714 -25.34648 -23.83369 -22.99622 -21.62047 -21.18346 -19.36234 -18.40933 -18.23185 -17.93774 -17.31815 -16.72100 -16.57679 -16.31421 -16.24901 -15.65593 -15.64917 -15.03922 -14.73534 -14.47068 -14.37399 -14.19916 -13.85366 -13.52308 -13.39354 -13.13751 -12.92184 -12.64192 -12.23521 -12.19732 -12.19042 -11.94342 -11.83075 -11.57048 -11.50840 -10.85161 -10.74360 -10.18569 -9.22090 -8.38762 -6.44888 -0.58947 0.04231 1.24876 1.31744 1.33880 1.46680 2.09080 2.29383 2.42301 2.79922 2.96416 3.17400 3.27972 3.58339 3.73212 3.86032 3.98494 4.06588 4.14888 4.18714 4.32353 4.45325 4.57651 4.59647 4.72444 4.82423 4.83450 4.90810 5.01980 5.02988 5.09236 5.16479 5.22959 5.35330 5.45711 5.59300 6.11739 6.26081 6.48465 6.60465 7.20718 8.76574 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026214 B = 0.004216 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.874979 B = 6640.120301 C = 7604.602155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 H 0.125 0.875 4 C -0.154 4.154 5 C 0.399 3.601 6 O -0.483 6.483 7 C -0.237 4.237 8 C -0.034 4.034 9 C 0.050 3.950 10 F -0.134 7.134 11 C -0.059 4.059 12 C -0.207 4.207 13 C 0.170 3.830 14 O -0.322 6.322 15 C 0.078 3.922 16 C -0.007 4.007 17 C -0.534 4.534 18 H 0.050 0.950 19 C 0.020 3.980 20 N -0.938 5.938 21 Si 0.941 3.059 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.259 1.259 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.176 0.824 31 H 0.155 0.845 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.022 0.978 35 H 0.021 0.979 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.584 21.598 5.623 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.062 4.062 3 H 0.143 0.857 4 C -0.190 4.190 5 C 0.280 3.720 6 O -0.361 6.361 7 C -0.239 4.239 8 C -0.035 4.035 9 C 0.031 3.969 10 F -0.112 7.112 11 C -0.077 4.077 12 C -0.225 4.225 13 C 0.122 3.878 14 O -0.234 6.234 15 C 0.004 3.996 16 C -0.045 4.045 17 C -0.572 4.572 18 H 0.068 0.932 19 C -0.179 4.179 20 N -0.578 5.578 21 Si 0.764 3.236 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.183 1.183 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.194 0.806 31 H 0.172 0.828 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.149 20.965 6.105 26.576 hybrid contribution 0.594 -0.792 -0.172 1.005 sum -14.555 20.173 5.934 25.574 Atomic orbital electron populations 1.21863 0.91285 1.02714 1.04062 1.20522 0.98036 0.99965 0.87704 0.85700 1.22486 1.01766 0.95655 0.99130 1.22931 0.76977 0.84630 0.87497 1.90592 1.38949 1.38815 1.67741 1.20561 1.07339 0.99662 0.96332 1.20653 0.94393 0.94244 0.94202 1.16929 0.99829 0.89264 0.90894 1.91492 1.74637 1.53883 1.91218 1.21386 0.93197 0.91716 1.01435 1.21295 1.05371 1.01936 0.93942 1.19722 0.88675 0.86163 0.93231 1.86165 1.62189 1.37138 1.37948 1.22906 0.96623 0.91268 0.88759 1.19441 0.95349 0.93064 0.96637 1.21070 1.31851 1.10955 0.93344 0.93152 1.25755 0.94641 0.95633 1.01859 1.69999 1.35063 1.18088 1.34617 0.85800 0.79704 0.77849 0.80234 1.19024 1.20071 1.18278 0.92853 0.88844 0.91720 0.84787 0.85058 0.80648 0.82773 0.91073 0.91128 0.95975 0.96043 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.99 71.98 0.65 -0.87 16 2 C -0.04 -0.61 3.52 -11.28 -0.04 -0.65 16 3 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 4 C -0.15 -2.37 6.51 30.09 0.20 -2.17 16 5 C 0.40 11.48 7.71 28.01 0.22 11.70 16 6 O -0.48 -18.64 17.74 -3.09 -0.05 -18.70 16 7 C -0.24 -6.84 6.10 -20.04 -0.12 -6.96 16 8 C -0.03 -0.72 5.49 -19.44 -0.11 -0.82 16 9 C 0.05 1.03 7.28 22.37 0.16 1.20 16 10 F -0.13 -2.53 16.71 44.97 0.75 -1.77 16 11 C -0.06 -1.20 10.01 22.34 0.22 -0.98 16 12 C -0.21 -5.44 9.01 22.29 0.20 -5.24 16 13 C 0.17 5.60 6.75 22.99 0.16 5.75 16 14 O -0.32 -13.09 9.81 -89.60 -0.88 -13.97 16 15 C 0.08 3.20 4.67 71.98 0.34 3.54 16 16 C -0.01 -0.37 4.41 29.85 0.13 -0.23 16 17 C -0.53 -30.60 9.66 25.60 0.25 -30.35 16 18 H 0.05 3.05 7.99 -2.92 -0.02 3.02 16 19 C 0.02 1.16 5.47 84.65 0.46 1.63 16 20 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 21 Si 0.94 45.41 27.47 68.60 1.88 47.29 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.06 0.73 7.61 -2.39 -0.02 0.71 16 28 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.13 1.53 7.68 -2.39 -0.02 1.52 16 30 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 31 H 0.15 3.85 6.27 -2.91 -0.02 3.84 16 32 H 0.07 2.71 7.66 -2.39 -0.02 2.69 16 33 H 0.07 2.70 7.65 -2.39 -0.02 2.68 16 34 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 35 H 0.02 1.06 7.57 -2.39 -0.02 1.05 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -72.68 310.60 5.76 -66.92 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: 1.04 Total: 2.22 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 2.71 Total: -24.46 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.30 Total: -57.54 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.93 Total: -32.67 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.75 Total: -1.77 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -72.68 5.76 -66.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532873657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.099 kcal (2) G-P(sol) polarization free energy of solvation -72.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds