Wall clock time and date at job start Tue Mar 31 2020 01:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47206 * 2 1 4 4 C 1.36874 * 119.99525 * 80.96382 * 3 2 1 5 5 H 1.07999 * 120.00241 * 141.53643 * 4 3 2 6 6 C 1.39048 * 120.00028 * 321.52350 * 4 3 2 7 7 N 1.31364 * 119.99904 * 14.27251 * 6 4 3 8 8 Si 1.86798 * 120.00064 * 194.26191 * 6 4 3 9 9 H 1.48502 * 109.47143 * 90.00506 * 8 6 4 10 10 H 1.48504 * 109.47248 * 210.00314 * 8 6 4 11 11 H 1.48498 * 109.47255 * 330.00705 * 8 6 4 12 12 C 1.34780 * 120.00262 * 260.95915 * 3 2 1 13 13 O 1.21582 * 119.99721 * 186.14145 * 12 3 2 14 14 C 1.47732 * 119.99569 * 6.14046 * 12 3 2 15 15 C 1.39747 * 120.50019 * 44.42078 * 14 12 3 16 16 N 1.31727 * 120.88318 * 179.71900 * 15 14 12 17 17 C 1.31766 * 122.05293 * 0.54249 * 16 15 14 18 18 C 1.39689 * 120.88670 * 359.74841 * 17 16 15 19 19 C 1.47745 * 120.48987 * 179.97438 * 18 17 16 20 20 O 1.21469 * 120.00270 * 180.02562 * 19 18 17 21 21 O 1.34709 * 119.99665 * 0.02562 * 19 18 17 22 22 C 1.45198 * 116.99772 * 180.02562 * 21 19 18 23 23 C 1.39786 * 120.49200 * 224.69397 * 14 12 3 24 24 H 1.09001 * 109.46622 * 9.13289 * 1 2 3 25 25 H 1.08994 * 109.47407 * 129.13429 * 1 2 3 26 26 H 1.09006 * 109.46872 * 249.13983 * 1 2 3 27 27 H 1.08999 * 109.47506 * 120.00438 * 2 1 3 28 28 H 1.09005 * 109.46608 * 240.00144 * 2 1 3 29 29 H 0.96999 * 120.00247 * 179.97438 * 7 6 4 30 30 H 1.08002 * 119.55641 * 359.97438 * 15 14 12 31 31 H 1.08000 * 119.55475 * 179.72153 * 17 16 15 32 32 H 1.08997 * 109.47274 * 299.99570 * 22 21 19 33 33 H 1.09004 * 109.47364 * 60.00094 * 22 21 19 34 34 H 1.09003 * 109.47409 * 179.97438 * 22 21 19 35 35 H 1.08001 * 120.92606 * 359.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0710 2.0884 1.1707 5 1 2.8990 2.7547 1.3624 6 6 1.0581 1.9492 2.1131 7 7 0.2082 0.9517 2.0215 8 14 0.9061 3.1804 3.5097 9 1 0.0225 4.2979 3.0905 10 1 0.3246 2.5094 4.7001 11 1 2.2503 3.7128 3.8488 12 6 2.4160 1.9555 -1.1527 13 8 2.9248 3.0596 -1.1379 14 6 2.2334 1.2433 -2.4341 15 6 1.0307 0.5907 -2.7177 16 7 0.8577 -0.0420 -3.8601 17 6 1.8020 -0.0999 -4.7773 18 6 3.0376 0.5194 -4.5745 19 6 4.0904 0.4484 -5.6087 20 8 5.1618 0.9897 -5.4229 21 8 3.8620 -0.2167 -6.7577 22 6 4.9416 -0.2456 -7.7282 23 6 3.2633 1.2072 -3.3785 24 1 -0.3632 1.0147 -0.1631 25 1 -0.3634 -0.6486 -0.7971 26 1 -0.3633 -0.3660 0.9604 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 -0.4981 0.8544 2.6791 30 1 0.2307 0.6089 -1.9923 31 1 1.6183 -0.6336 -5.6980 32 1 5.1914 0.7732 -8.0243 33 1 5.8168 -0.7200 -7.2842 34 1 4.6271 -0.8122 -8.6047 35 1 4.2069 1.6975 -3.1898 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546765788.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:18 Heat of formation + Delta-G solvation = -43.101330 kcal Electronic energy + Delta-G solvation = -21506.630680 eV Core-core repulsion = 18085.884319 eV Total energy + Delta-G solvation = -3420.746361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83017 -39.82638 -38.17440 -36.55536 -35.37435 -32.48163 -32.32360 -31.17228 -29.64141 -27.94533 -25.58881 -24.51661 -23.49234 -22.22733 -21.48331 -19.81790 -17.84549 -17.42724 -17.07679 -16.59979 -16.48722 -16.22128 -15.49705 -14.86604 -14.30048 -13.87332 -13.85333 -13.55977 -13.21237 -13.10045 -13.02621 -12.79156 -12.33115 -12.12234 -11.71586 -11.31807 -11.17752 -10.97528 -10.97105 -10.84765 -10.53159 -10.29297 -9.85397 -9.69898 -9.60326 -9.02352 -8.84964 -8.53110 -7.62457 -6.18578 -4.13058 0.54452 1.18069 2.47207 2.49424 3.13384 3.22606 3.26255 3.59342 4.01670 4.06778 4.38249 4.55415 4.74010 4.85672 4.91973 4.94190 4.99661 5.07872 5.20837 5.33879 5.54245 5.71067 5.98053 6.01507 6.13225 6.30472 6.54959 6.60687 6.62761 6.86064 7.26241 7.48026 7.59681 7.89954 7.92824 8.09169 8.36562 9.01886 9.20068 9.77652 10.53173 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036211 B = 0.004398 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.070639 B = 6364.673548 C = 6916.036675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.123 3.877 3 N -0.433 5.433 4 C -0.311 4.311 5 H 0.095 0.905 6 C 0.042 3.958 7 N -0.861 5.861 8 Si 0.923 3.077 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.493 3.507 13 O -0.572 6.572 14 C -0.157 4.157 15 C 0.151 3.849 16 N -0.492 5.492 17 C 0.157 3.843 18 C -0.194 4.194 19 C 0.519 3.481 20 O -0.502 6.502 21 O -0.355 6.355 22 C 0.037 3.963 23 C 0.024 3.976 24 H 0.052 0.948 25 H -0.001 1.001 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.267 0.733 30 H 0.184 0.816 31 H 0.169 0.831 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.563 -6.476 -12.445 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.000 4.000 3 N -0.151 5.151 4 C -0.439 4.439 5 H 0.113 0.887 6 C -0.161 4.161 7 N -0.499 5.499 8 Si 0.749 3.251 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.194 1.194 12 C 0.280 3.720 13 O -0.456 6.456 14 C -0.162 4.162 15 C -0.005 4.005 16 N -0.200 5.200 17 C -0.002 4.002 18 C -0.197 4.197 19 C 0.363 3.637 20 O -0.391 6.391 21 O -0.272 6.272 22 C -0.056 4.056 23 C -0.002 4.002 24 H 0.071 0.929 25 H 0.018 0.982 26 H 0.126 0.874 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.201 0.799 31 H 0.186 0.814 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.197 -6.271 -12.380 13.929 hybrid contribution 0.869 0.913 0.698 1.441 sum 2.067 -5.358 -11.681 13.017 Atomic orbital electron populations 1.22593 0.94902 1.00197 1.00773 1.21410 0.96199 0.83186 0.99254 1.43585 1.55006 1.10933 1.05553 1.19473 1.07415 1.23000 0.93987 0.88714 1.25681 0.94427 0.96721 0.99307 1.70524 1.17609 1.27168 1.34600 0.86006 0.78971 0.80550 0.79594 1.20159 1.20983 1.19404 1.17802 0.85570 0.86085 0.82543 1.90651 1.47891 1.20779 1.86262 1.21422 0.95679 1.00879 0.98237 1.24174 0.96394 0.87051 0.92894 1.67857 1.31855 1.18246 1.02068 1.23253 0.87087 0.92265 0.97589 1.19970 0.95920 1.08360 0.95456 1.20952 0.86523 0.75209 0.81041 1.90852 1.25954 1.43470 1.78795 1.86527 1.44472 1.68836 1.27347 1.23284 0.89134 1.02992 0.90233 1.21801 0.99083 0.90190 0.89130 0.92950 0.98228 0.87359 0.90982 0.94585 0.92142 0.79921 0.81382 0.91774 0.91780 0.87916 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 6.38 37.16 0.24 -2.33 16 2 C 0.12 2.62 4.92 -4.04 -0.02 2.60 16 3 N -0.43 -10.63 2.48 -115.92 -0.29 -10.92 16 4 C -0.31 -8.26 8.96 -15.00 -0.13 -8.40 16 5 H 0.10 2.65 7.69 -52.49 -0.40 2.24 16 6 C 0.04 1.05 5.46 -17.45 -0.10 0.95 16 7 N -0.86 -20.54 6.98 55.50 0.39 -20.15 16 8 Si 0.92 19.91 29.58 -169.99 -5.03 14.88 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 C 0.49 11.98 7.21 -12.38 -0.09 11.89 16 13 O -0.57 -15.83 16.85 5.29 0.09 -15.74 16 14 C -0.16 -3.11 4.83 -104.88 -0.51 -3.62 16 15 C 0.15 2.71 8.81 -17.03 -0.15 2.56 16 16 N -0.49 -7.95 10.33 -12.54 -0.13 -8.08 16 17 C 0.16 2.20 10.78 -17.04 -0.18 2.02 16 18 C -0.19 -2.97 5.88 -104.89 -0.62 -3.59 16 19 C 0.52 7.53 7.90 34.62 0.27 7.81 16 20 O -0.50 -8.52 16.20 -19.24 -0.31 -8.84 16 21 O -0.36 -4.10 9.83 -40.52 -0.40 -4.50 16 22 C 0.04 0.31 10.56 101.05 1.07 1.37 16 23 C 0.02 0.44 9.38 -38.42 -0.36 0.08 16 24 H 0.05 1.17 7.06 -51.93 -0.37 0.80 16 25 H 0.00 -0.01 7.30 -51.93 -0.38 -0.39 16 26 H 0.11 2.29 5.85 -53.21 -0.31 1.98 16 27 H 0.07 1.61 7.89 -51.93 -0.41 1.20 16 28 H 0.04 0.69 5.83 -51.93 -0.30 0.39 16 29 H 0.27 6.06 8.31 -40.82 -0.34 5.72 16 30 H 0.18 3.35 4.02 -52.49 -0.21 3.14 16 31 H 0.17 1.80 7.61 -52.49 -0.40 1.40 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.15 2.80 7.73 -52.49 -0.41 2.40 16 LS Contribution 298.36 15.07 4.50 4.50 Total: -1.00 -29.68 298.36 -5.35 -35.03 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.59 Total: 2.48 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -0.58 Total: 11.34 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: -0.03 Total: -39.16 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.62 Total: -29.07 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.68 -5.35 -35.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546765788.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.071 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds