Wall clock time and date at job start Tue Mar 31 2020 01:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47206 * 2 1 4 4 C 1.36874 * 119.99525 * 80.96382 * 3 2 1 5 5 H 1.07999 * 120.00241 * 141.53643 * 4 3 2 6 6 C 1.39048 * 120.00028 * 321.52350 * 4 3 2 7 7 N 1.31364 * 119.99904 * 14.27251 * 6 4 3 8 8 Si 1.86798 * 120.00064 * 194.26191 * 6 4 3 9 9 H 1.48502 * 109.47143 * 90.00506 * 8 6 4 10 10 H 1.48504 * 109.47248 * 210.00314 * 8 6 4 11 11 H 1.48498 * 109.47255 * 330.00705 * 8 6 4 12 12 C 1.34780 * 120.00262 * 260.95915 * 3 2 1 13 13 O 1.21582 * 119.99721 * 186.14145 * 12 3 2 14 14 C 1.47732 * 119.99569 * 6.14046 * 12 3 2 15 15 C 1.39747 * 120.50019 * 44.42078 * 14 12 3 16 16 N 1.31727 * 120.88318 * 179.71900 * 15 14 12 17 17 C 1.31766 * 122.05293 * 0.54249 * 16 15 14 18 18 C 1.39689 * 120.88670 * 359.74841 * 17 16 15 19 19 C 1.47745 * 120.48987 * 179.97438 * 18 17 16 20 20 O 1.21469 * 120.00270 * 180.02562 * 19 18 17 21 21 O 1.34709 * 119.99665 * 0.02562 * 19 18 17 22 22 C 1.45198 * 116.99772 * 180.02562 * 21 19 18 23 23 C 1.39786 * 120.49200 * 224.69397 * 14 12 3 24 24 H 1.09001 * 109.46622 * 9.13289 * 1 2 3 25 25 H 1.08994 * 109.47407 * 129.13429 * 1 2 3 26 26 H 1.09006 * 109.46872 * 249.13983 * 1 2 3 27 27 H 1.08999 * 109.47506 * 120.00438 * 2 1 3 28 28 H 1.09005 * 109.46608 * 240.00144 * 2 1 3 29 29 H 0.96999 * 120.00247 * 179.97438 * 7 6 4 30 30 H 1.08002 * 119.55641 * 359.97438 * 15 14 12 31 31 H 1.08000 * 119.55475 * 179.72153 * 17 16 15 32 32 H 1.08997 * 109.47274 * 299.99570 * 22 21 19 33 33 H 1.09004 * 109.47364 * 60.00094 * 22 21 19 34 34 H 1.09003 * 109.47409 * 179.97438 * 22 21 19 35 35 H 1.08001 * 120.92606 * 359.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0710 2.0884 1.1707 5 1 2.8990 2.7547 1.3624 6 6 1.0581 1.9492 2.1131 7 7 0.2082 0.9517 2.0215 8 14 0.9061 3.1804 3.5097 9 1 0.0225 4.2979 3.0905 10 1 0.3246 2.5094 4.7001 11 1 2.2503 3.7128 3.8488 12 6 2.4160 1.9555 -1.1527 13 8 2.9248 3.0596 -1.1379 14 6 2.2334 1.2433 -2.4341 15 6 1.0307 0.5907 -2.7177 16 7 0.8577 -0.0420 -3.8601 17 6 1.8020 -0.0999 -4.7773 18 6 3.0376 0.5194 -4.5745 19 6 4.0904 0.4484 -5.6087 20 8 5.1618 0.9897 -5.4229 21 8 3.8620 -0.2167 -6.7577 22 6 4.9416 -0.2456 -7.7282 23 6 3.2633 1.2072 -3.3785 24 1 -0.3632 1.0147 -0.1631 25 1 -0.3634 -0.6486 -0.7971 26 1 -0.3633 -0.3660 0.9604 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 -0.4981 0.8544 2.6791 30 1 0.2307 0.6089 -1.9923 31 1 1.6183 -0.6336 -5.6980 32 1 5.1914 0.7732 -8.0243 33 1 5.8168 -0.7200 -7.2842 34 1 4.6271 -0.8122 -8.6047 35 1 4.2069 1.6975 -3.1898 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546765788.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:17 Heat of formation + Delta-G solvation = -61.539417 kcal Electronic energy + Delta-G solvation = -21507.430215 eV Core-core repulsion = 18085.884319 eV Total energy + Delta-G solvation = -3421.545897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11198 -41.16373 -39.83259 -37.62459 -37.27129 -34.09255 -33.83516 -32.76425 -31.37348 -28.77287 -27.36816 -25.76873 -25.02615 -23.95744 -22.76557 -21.36212 -19.24313 -18.93138 -18.56436 -18.13572 -17.54859 -17.47878 -17.00064 -16.63473 -16.01604 -15.46959 -15.01144 -14.97707 -14.88645 -14.50089 -14.34688 -14.22397 -13.78603 -13.31641 -13.19014 -13.06380 -12.92344 -12.80698 -12.24729 -12.08916 -12.03343 -11.85142 -11.47453 -11.21529 -11.06892 -10.75355 -10.48948 -10.23032 -9.53113 -8.06615 -6.12032 -0.75001 -0.22841 1.25127 1.37774 1.44429 1.47439 1.53026 1.93900 2.24804 2.57825 2.81210 3.01511 3.19280 3.50574 3.58783 3.63277 3.80483 4.05175 4.26937 4.32642 4.37029 4.40645 4.69787 4.76605 4.80256 4.85843 4.93742 5.14401 5.17376 5.28758 5.46230 5.60592 6.13519 6.19710 6.47427 6.49867 6.60971 7.09983 7.29665 7.87683 8.61060 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.036211 B = 0.004398 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.070639 B = 6364.673548 C = 6916.036675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.126 3.874 3 N -0.440 5.440 4 C -0.356 4.356 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.856 5.856 8 Si 0.978 3.022 9 H -0.279 1.279 10 H -0.265 1.265 11 H -0.278 1.278 12 C 0.483 3.517 13 O -0.622 6.622 14 C -0.177 4.177 15 C 0.160 3.840 16 N -0.489 5.489 17 C 0.182 3.818 18 C -0.188 4.188 19 C 0.526 3.474 20 O -0.532 6.532 21 O -0.345 6.345 22 C 0.028 3.972 23 C 0.021 3.979 24 H 0.027 0.973 25 H 0.033 0.967 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.275 0.725 30 H 0.180 0.820 31 H 0.215 0.785 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.142 0.858 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 -8.408 -14.374 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.004 3.996 3 N -0.157 5.157 4 C -0.483 4.483 5 H 0.083 0.917 6 C -0.186 4.186 7 N -0.493 5.493 8 Si 0.802 3.198 9 H -0.205 1.205 10 H -0.190 1.190 11 H -0.203 1.203 12 C 0.272 3.728 13 O -0.510 6.510 14 C -0.183 4.183 15 C 0.004 3.996 16 N -0.197 5.197 17 C 0.024 3.976 18 C -0.191 4.191 19 C 0.371 3.629 20 O -0.423 6.423 21 O -0.261 6.261 22 C -0.064 4.064 23 C -0.006 4.006 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.118 0.882 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.197 0.803 31 H 0.231 0.769 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.160 0.840 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.079 -8.268 -14.322 16.537 hybrid contribution 1.278 1.426 1.138 2.228 sum 1.199 -6.842 -13.183 14.901 Atomic orbital electron populations 1.22337 0.93747 0.99244 1.01575 1.21479 0.96962 0.81585 0.99580 1.43755 1.54809 1.11935 1.05220 1.19354 1.08269 1.24844 0.95875 0.91737 1.26212 0.93768 0.97902 1.00672 1.70650 1.17036 1.26708 1.34862 0.85196 0.78319 0.78553 0.77718 1.20476 1.18979 1.20266 1.18436 0.84539 0.85862 0.83957 1.90590 1.50003 1.23049 1.87322 1.20970 0.97489 1.03095 0.96722 1.24003 0.95190 0.86784 0.93661 1.67980 1.32221 1.17946 1.01597 1.23932 0.85463 0.90199 0.98001 1.20021 0.96959 1.07511 0.94638 1.20733 0.85563 0.74944 0.81640 1.90854 1.27067 1.44861 1.79522 1.86509 1.45557 1.67526 1.26459 1.23682 0.88610 1.03763 0.90383 1.21708 0.98195 0.90598 0.90080 0.95379 0.94917 0.88159 0.92370 0.92422 0.91345 0.80342 0.76889 0.91868 0.91779 0.83965 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 6.38 71.98 0.46 -3.95 16 2 C 0.13 5.42 4.92 86.38 0.43 5.84 16 3 N -0.44 -22.49 2.48 -638.93 -1.58 -24.07 16 4 C -0.36 -19.79 8.96 84.10 0.75 -19.04 16 5 H 0.06 3.88 7.69 -2.91 -0.02 3.86 16 6 C 0.02 0.95 5.46 84.96 0.46 1.41 16 7 N -0.86 -40.67 6.98 21.68 0.15 -40.52 16 8 Si 0.98 41.28 29.58 68.60 2.03 43.31 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 C 0.48 24.62 7.21 86.75 0.63 25.24 16 13 O -0.62 -36.67 16.85 -3.97 -0.07 -36.74 16 14 C -0.18 -7.13 4.83 -20.03 -0.10 -7.23 16 15 C 0.16 5.54 8.81 85.07 0.75 6.29 16 16 N -0.49 -14.28 10.33 -193.59 -2.00 -16.28 16 17 C 0.18 4.42 10.78 85.05 0.92 5.33 16 18 C -0.19 -5.39 5.88 -20.04 -0.12 -5.51 16 19 C 0.53 14.15 7.90 70.34 0.56 14.71 16 20 O -0.53 -17.63 16.20 19.94 0.32 -17.31 16 21 O -0.34 -6.70 9.83 -56.19 -0.55 -7.25 16 22 C 0.03 0.37 10.56 113.37 1.20 1.57 16 23 C 0.02 0.75 9.38 23.02 0.22 0.96 16 24 H 0.03 1.24 7.06 -2.39 -0.02 1.22 16 25 H 0.03 1.08 7.30 -2.39 -0.02 1.06 16 26 H 0.10 4.14 5.85 -4.92 -0.03 4.11 16 27 H 0.06 2.62 7.89 -2.39 -0.02 2.60 16 28 H 0.06 2.19 5.83 -2.38 -0.01 2.18 16 29 H 0.28 12.17 8.31 -92.71 -0.77 11.40 16 30 H 0.18 6.34 4.02 -2.91 -0.01 6.33 16 31 H 0.21 3.28 7.61 -2.91 -0.02 3.26 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.14 5.31 7.73 -2.91 -0.02 5.29 16 Total: -1.00 -67.17 298.36 5.57 -61.61 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.12 Total: 11.61 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 6.15 Total: 25.63 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.43 Total: -80.87 kcal Atomic # 8 Polarization: -61.00 SS G_CDS: -0.30 Total: -61.29 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -67.17 5.57 -61.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546765788.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.068 kcal (2) G-P(sol) polarization free energy of solvation -67.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds