Wall clock time and date at job start Tue Mar 31 2020 00:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47199 * 2 1 4 4 C 1.50707 * 109.46903 * 119.99352 * 2 1 3 5 5 O 1.21299 * 119.99612 * 120.00078 * 4 2 1 6 6 N 1.34775 * 119.99988 * 300.00199 * 4 2 1 7 7 C 1.46494 * 120.00115 * 359.97438 * 6 4 2 8 8 C 1.37097 * 119.99560 * 180.02562 * 6 4 2 9 9 H 1.07994 * 120.00309 * 22.60326 * 8 6 4 10 10 C 1.38952 * 119.99430 * 202.60323 * 8 6 4 11 11 N 1.31410 * 120.00399 * 10.42159 * 10 8 6 12 12 Si 1.86810 * 119.99804 * 190.41632 * 10 8 6 13 13 H 1.48498 * 109.46928 * 90.00107 * 12 10 8 14 14 H 1.48498 * 109.47117 * 210.00096 * 12 10 8 15 15 H 1.48496 * 109.46904 * 330.00378 * 12 10 8 16 16 C 1.50698 * 109.47360 * 239.99263 * 2 1 3 17 17 C 1.38251 * 120.00041 * 300.00720 * 16 2 1 18 18 C 1.38215 * 120.00291 * 179.70067 * 17 16 2 19 19 C 1.38260 * 119.99502 * 359.97438 * 18 17 16 20 20 C 1.38209 * 120.00064 * 0.02562 * 19 18 17 21 21 N 1.48026 * 119.99997 * 180.02562 * 20 19 18 22 22 O 1.21801 * 119.99564 * 0.02562 * 21 20 19 23 23 O 1.21795 * 119.99938 * 179.97438 * 21 20 19 24 24 C 1.38216 * 119.99980 * 119.72251 * 16 2 1 25 25 H 1.08997 * 109.46930 * 60.00256 * 1 2 3 26 26 H 1.08994 * 109.46916 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46904 * 300.00532 * 1 2 3 28 28 H 1.08996 * 109.47393 * 93.38838 * 7 6 4 29 29 H 1.08999 * 109.47135 * 213.38910 * 7 6 4 30 30 H 1.09006 * 109.47373 * 333.38642 * 7 6 4 31 31 H 0.96999 * 120.00136 * 180.02562 * 11 10 8 32 32 H 1.08007 * 120.00167 * 359.71172 * 17 16 2 33 33 H 1.08002 * 120.00514 * 180.02562 * 18 17 16 34 34 H 1.08005 * 119.99578 * 180.02562 * 19 18 17 35 35 H 1.08006 * 119.99848 * 0.25912 * 24 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7297 -1.6965 1.1194 6 7 1.7067 -0.2497 2.4546 7 6 0.8649 0.9417 2.5889 8 6 2.1641 -0.8957 3.5741 9 1 3.0449 -1.5179 3.5165 10 6 1.4944 -0.7496 4.7827 11 7 0.3173 -0.1663 4.8155 12 14 2.2673 -1.3826 6.3613 13 1 3.0922 -0.3101 6.9732 14 1 1.1976 -1.7861 7.3090 15 1 3.1265 -2.5548 6.0562 16 6 2.0324 -0.7105 -1.2303 17 6 1.6984 -2.0341 -1.4490 18 6 2.1540 -2.6841 -2.5806 19 6 2.9434 -2.0103 -3.4940 20 6 3.2774 -0.6871 -3.2753 21 7 4.1222 0.0344 -4.2535 22 8 4.5225 -0.5379 -5.2514 23 8 4.4160 1.2006 -4.0611 24 6 2.8223 -0.0373 -2.1431 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.1785 0.6407 2.6825 29 1 1.1633 1.4992 3.4767 30 1 0.9836 1.5717 1.7074 31 1 -0.1500 -0.0640 5.6593 32 1 1.0811 -2.5603 -0.7358 33 1 1.8927 -3.7179 -2.7517 34 1 3.2991 -2.5180 -4.3784 35 1 3.0830 0.9969 -1.9724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578418469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:08 Heat of formation + Delta-G solvation = -3.311634 kcal Electronic energy + Delta-G solvation = -21384.806718 eV Core-core repulsion = 17965.785768 eV Total energy + Delta-G solvation = -3419.020950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.09232 -39.98664 -38.36035 -36.49094 -34.91119 -34.02164 -31.85238 -31.64878 -29.69721 -26.47207 -26.34677 -25.25159 -23.83330 -22.62621 -21.69140 -19.64058 -18.59787 -18.00732 -17.45177 -17.02683 -16.64138 -16.26874 -15.20942 -14.84445 -14.57183 -14.34931 -14.02303 -13.55988 -13.18862 -12.83221 -12.57855 -12.15566 -12.05125 -11.71787 -11.55303 -11.48728 -11.30059 -11.19887 -11.08435 -11.01574 -10.93974 -10.68412 -10.41826 -10.35548 -9.45009 -9.15657 -9.08541 -8.48623 -7.82835 -6.43079 -4.01061 -0.03213 1.02693 1.48794 1.51154 3.08205 3.18251 3.22926 3.38681 3.70372 4.03453 4.33277 4.50596 4.75398 4.84054 4.97366 5.01663 5.03345 5.16988 5.43827 5.45945 5.52924 5.71412 5.76740 5.96961 5.99589 6.08089 6.19374 6.27718 6.33125 6.47249 6.61453 6.74887 7.10688 7.45163 7.72893 7.99147 8.34143 9.04832 9.28026 9.81464 10.59921 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031139 B = 0.004078 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.978892 B = 6864.275109 C = 6929.946763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.069 4.069 3 H 0.095 0.905 4 C 0.448 3.552 5 O -0.586 6.586 6 N -0.439 5.439 7 C 0.108 3.892 8 C -0.308 4.308 9 H 0.099 0.901 10 C 0.033 3.967 11 N -0.882 5.882 12 Si 0.927 3.073 13 H -0.277 1.277 14 H -0.283 1.283 15 H -0.269 1.269 16 C -0.042 4.042 17 C -0.026 4.026 18 C -0.121 4.121 19 C -0.064 4.064 20 C -0.051 4.051 21 N 0.034 4.966 22 O -0.172 6.172 23 O -0.167 6.167 24 C -0.054 4.054 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.029 0.971 31 H 0.269 0.731 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 0.417 -10.762 10.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.091 4.091 3 H 0.113 0.887 4 C 0.235 3.765 5 O -0.471 6.471 6 N -0.156 5.156 7 C -0.036 4.036 8 C -0.435 4.435 9 H 0.117 0.883 10 C -0.171 4.171 11 N -0.522 5.522 12 Si 0.754 3.246 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.194 1.194 16 C -0.043 4.043 17 C -0.044 4.044 18 C -0.140 4.140 19 C -0.083 4.083 20 C -0.134 4.134 21 N 0.552 4.448 22 O -0.386 6.386 23 O -0.383 6.383 24 C -0.073 4.073 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.265 -0.346 -10.164 10.419 hybrid contribution 0.489 0.053 0.687 0.844 sum -1.777 -0.293 -9.477 9.647 Atomic orbital electron populations 1.22057 0.92319 1.03127 1.03351 1.20254 0.97605 0.99844 0.91360 0.88703 1.19692 0.86456 0.86510 0.83843 1.90541 1.42323 1.28304 1.85948 1.43515 1.44035 1.23794 1.04298 1.21708 0.96000 0.86964 0.98902 1.19675 1.10512 1.27877 0.85480 0.88318 1.25344 0.94920 0.97005 0.99796 1.69971 1.12037 1.42972 1.27173 0.85903 0.78643 0.79299 0.80763 1.20286 1.20850 1.19352 1.19504 0.95970 0.94267 0.94582 1.21521 0.94691 0.93444 0.94734 1.21173 0.98215 1.00741 0.93852 1.20963 0.95754 0.91226 1.00338 1.20977 1.04182 0.94400 0.93812 1.43660 0.99284 1.00880 1.01004 1.94498 1.56406 1.69537 1.18153 1.94523 1.61156 1.00574 1.82004 1.20890 0.94383 1.01344 0.90688 0.92407 0.92148 0.89617 0.91676 0.91364 0.95209 0.92124 0.83989 0.83764 0.83436 0.83309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.61 37.16 0.32 -1.81 16 2 C -0.07 -1.13 2.09 -92.92 -0.19 -1.32 16 3 H 0.09 1.40 7.14 -51.93 -0.37 1.03 16 4 C 0.45 9.92 6.90 -10.98 -0.08 9.84 16 5 O -0.59 -14.89 14.80 5.54 0.08 -14.81 16 6 N -0.44 -10.42 3.02 -122.19 -0.37 -10.79 16 7 C 0.11 2.20 7.04 59.84 0.42 2.62 16 8 C -0.31 -8.15 9.29 -14.93 -0.14 -8.28 16 9 H 0.10 2.77 7.40 -52.49 -0.39 2.38 16 10 C 0.03 0.82 5.14 -17.47 -0.09 0.73 16 11 N -0.88 -22.19 10.56 55.50 0.59 -21.61 16 12 Si 0.93 19.99 29.57 -169.99 -5.03 14.96 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 16 C -0.04 -0.64 4.40 -104.63 -0.46 -1.10 16 17 C -0.03 -0.37 7.93 -39.59 -0.31 -0.68 16 18 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 19 C -0.06 -0.79 9.56 -39.58 -0.38 -1.17 16 20 C -0.05 -0.74 6.85 -79.95 -0.55 -1.28 16 21 N 0.03 0.54 4.45 33.96 0.15 0.69 16 22 O -0.17 -2.70 18.45 -29.46 -0.54 -3.24 16 23 O -0.17 -2.73 18.45 -29.46 -0.54 -3.28 16 24 C -0.05 -0.78 9.18 -39.59 -0.36 -1.15 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.86 7.40 -51.93 -0.38 0.48 16 27 H 0.09 1.26 4.59 -51.93 -0.24 1.02 16 28 H 0.06 1.36 6.50 -51.93 -0.34 1.03 16 29 H 0.07 1.50 7.13 -51.93 -0.37 1.13 16 30 H 0.03 0.49 5.75 -51.93 -0.30 0.19 16 31 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 32 H 0.14 2.07 7.52 -52.48 -0.39 1.68 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.15 1.53 7.61 -52.48 -0.40 1.13 16 35 H 0.15 1.99 7.50 -52.48 -0.39 1.59 16 LS Contribution 300.70 15.07 4.53 4.53 Total: -1.00 -29.84 300.70 -6.91 -36.74 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -3.56 Total: 2.25 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -2.22 Total: -5.44 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.37 Total: -31.71 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.01 Total: -21.33 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.84 -6.91 -36.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578418469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.431 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds