Wall clock time and date at job start Tue Mar 31 2020 00:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47199 * 2 1 4 4 C 1.50707 * 109.46903 * 119.99352 * 2 1 3 5 5 O 1.21299 * 119.99612 * 120.00078 * 4 2 1 6 6 N 1.34775 * 119.99988 * 300.00199 * 4 2 1 7 7 C 1.46494 * 120.00115 * 359.97438 * 6 4 2 8 8 C 1.37097 * 119.99560 * 180.02562 * 6 4 2 9 9 H 1.07994 * 120.00309 * 22.60326 * 8 6 4 10 10 C 1.38952 * 119.99430 * 202.60323 * 8 6 4 11 11 N 1.31410 * 120.00399 * 10.42159 * 10 8 6 12 12 Si 1.86810 * 119.99804 * 190.41632 * 10 8 6 13 13 H 1.48498 * 109.46928 * 90.00107 * 12 10 8 14 14 H 1.48498 * 109.47117 * 210.00096 * 12 10 8 15 15 H 1.48496 * 109.46904 * 330.00378 * 12 10 8 16 16 C 1.50698 * 109.47360 * 239.99263 * 2 1 3 17 17 C 1.38251 * 120.00041 * 300.00720 * 16 2 1 18 18 C 1.38215 * 120.00291 * 179.70067 * 17 16 2 19 19 C 1.38260 * 119.99502 * 359.97438 * 18 17 16 20 20 C 1.38209 * 120.00064 * 0.02562 * 19 18 17 21 21 N 1.48026 * 119.99997 * 180.02562 * 20 19 18 22 22 O 1.21801 * 119.99564 * 0.02562 * 21 20 19 23 23 O 1.21795 * 119.99938 * 179.97438 * 21 20 19 24 24 C 1.38216 * 119.99980 * 119.72251 * 16 2 1 25 25 H 1.08997 * 109.46930 * 60.00256 * 1 2 3 26 26 H 1.08994 * 109.46916 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46904 * 300.00532 * 1 2 3 28 28 H 1.08996 * 109.47393 * 93.38838 * 7 6 4 29 29 H 1.08999 * 109.47135 * 213.38910 * 7 6 4 30 30 H 1.09006 * 109.47373 * 333.38642 * 7 6 4 31 31 H 0.96999 * 120.00136 * 180.02562 * 11 10 8 32 32 H 1.08007 * 120.00167 * 359.71172 * 17 16 2 33 33 H 1.08002 * 120.00514 * 180.02562 * 18 17 16 34 34 H 1.08005 * 119.99578 * 180.02562 * 19 18 17 35 35 H 1.08006 * 119.99848 * 0.25912 * 24 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7297 -1.6965 1.1194 6 7 1.7067 -0.2497 2.4546 7 6 0.8649 0.9417 2.5889 8 6 2.1641 -0.8957 3.5741 9 1 3.0449 -1.5179 3.5165 10 6 1.4944 -0.7496 4.7827 11 7 0.3173 -0.1663 4.8155 12 14 2.2673 -1.3826 6.3613 13 1 3.0922 -0.3101 6.9732 14 1 1.1976 -1.7861 7.3090 15 1 3.1265 -2.5548 6.0562 16 6 2.0324 -0.7105 -1.2303 17 6 1.6984 -2.0341 -1.4490 18 6 2.1540 -2.6841 -2.5806 19 6 2.9434 -2.0103 -3.4940 20 6 3.2774 -0.6871 -3.2753 21 7 4.1222 0.0344 -4.2535 22 8 4.5225 -0.5379 -5.2514 23 8 4.4160 1.2006 -4.0611 24 6 2.8223 -0.0373 -2.1431 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.1785 0.6407 2.6825 29 1 1.1633 1.4992 3.4767 30 1 0.9836 1.5717 1.7074 31 1 -0.1500 -0.0640 5.6593 32 1 1.0811 -2.5603 -0.7358 33 1 1.8927 -3.7179 -2.7517 34 1 3.2991 -2.5180 -4.3784 35 1 3.0830 0.9969 -1.9724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578418469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:08 Heat of formation + Delta-G solvation = -19.480313 kcal Electronic energy + Delta-G solvation = -21385.507845 eV Core-core repulsion = 17965.785768 eV Total energy + Delta-G solvation = -3419.722077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.27531 -41.32178 -39.82892 -37.69940 -36.71872 -35.38865 -33.55861 -32.82873 -30.91904 -28.12118 -27.59509 -26.89035 -25.20011 -23.70529 -23.02232 -21.06541 -19.79997 -19.35844 -18.89312 -18.64070 -18.02113 -17.51049 -16.71042 -16.24259 -16.21321 -15.79130 -15.41130 -14.88557 -14.44212 -14.28891 -13.89693 -13.61357 -13.30292 -13.11666 -13.00797 -12.98338 -12.73408 -12.56366 -12.54340 -12.31742 -12.27880 -12.19340 -12.11923 -11.94724 -10.99427 -10.52656 -10.37421 -10.08143 -9.69764 -8.33542 -5.99541 -1.19474 -0.02100 0.34068 0.36718 1.35835 1.40914 1.51497 1.99756 2.22115 2.34400 3.02296 3.09630 3.31624 3.49867 3.73802 3.92830 3.95149 4.01473 4.08093 4.27096 4.35969 4.55730 4.70465 4.72745 4.85459 4.88181 5.01500 5.03703 5.13083 5.21851 5.33897 5.44004 5.46472 5.52732 6.08581 6.46284 6.50527 7.15458 7.46225 8.00288 8.67071 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031139 B = 0.004078 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.978892 B = 6864.275109 C = 6929.946763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 H 0.114 0.886 4 C 0.443 3.557 5 O -0.625 6.625 6 N -0.457 5.457 7 C 0.118 3.882 8 C -0.343 4.343 9 H 0.070 0.930 10 C 0.002 3.998 11 N -0.893 5.893 12 Si 0.984 3.016 13 H -0.268 1.268 14 H -0.273 1.273 15 H -0.278 1.278 16 C -0.059 4.059 17 C -0.037 4.037 18 C -0.109 4.109 19 C -0.054 4.054 20 C -0.064 4.064 21 N 0.035 4.965 22 O -0.166 6.166 23 O -0.193 6.193 24 C -0.057 4.057 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.273 0.727 32 H 0.134 0.866 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.665 0.239 -11.759 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 H 0.132 0.868 4 C 0.232 3.768 5 O -0.513 6.513 6 N -0.175 5.175 7 C -0.024 4.024 8 C -0.471 4.471 9 H 0.088 0.912 10 C -0.200 4.200 11 N -0.532 5.532 12 Si 0.808 3.192 13 H -0.194 1.194 14 H -0.198 1.198 15 H -0.203 1.203 16 C -0.060 4.060 17 C -0.055 4.055 18 C -0.127 4.127 19 C -0.073 4.073 20 C -0.147 4.147 21 N 0.550 4.450 22 O -0.383 6.383 23 O -0.403 6.403 24 C -0.076 4.076 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.198 0.802 34 H 0.190 0.810 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.891 -0.455 -11.150 11.528 hybrid contribution 0.678 0.017 0.922 1.144 sum -2.213 -0.438 -10.228 10.474 Atomic orbital electron populations 1.22030 0.90423 1.03191 1.04611 1.20176 0.99027 0.99986 0.88775 0.86833 1.20693 0.84961 0.86135 0.85002 1.90499 1.43752 1.30194 1.86849 1.43751 1.44693 1.24750 1.04336 1.21660 0.94835 0.86101 0.99852 1.19570 1.10710 1.29290 0.87511 0.91234 1.25978 0.95255 0.96919 1.01822 1.70034 1.12337 1.42852 1.27969 0.85063 0.77997 0.78551 0.77540 1.19374 1.19779 1.20281 1.19439 0.97184 0.94885 0.94495 1.21649 0.94965 0.93329 0.95598 1.21523 0.96757 1.02092 0.92306 1.21327 0.94681 0.90325 1.00986 1.21158 1.04609 0.95197 0.93725 1.43839 0.99255 1.00830 1.01119 1.94477 1.56177 1.69362 1.18328 1.94525 1.62191 1.01134 1.82404 1.20921 0.94140 1.01810 0.90712 0.89038 0.92774 0.90300 0.92402 0.93437 0.91145 0.91696 0.84794 0.80171 0.80956 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 8.61 71.98 0.62 -3.19 16 2 C -0.06 -1.83 2.09 -12.28 -0.03 -1.86 16 3 H 0.11 3.12 7.14 -2.39 -0.02 3.10 16 4 C 0.44 19.77 6.90 87.66 0.60 20.38 16 5 O -0.63 -32.53 14.80 -3.09 -0.05 -32.58 16 6 N -0.46 -22.05 3.02 -658.90 -1.99 -24.04 16 7 C 0.12 4.78 7.04 127.77 0.90 5.68 16 8 C -0.34 -18.68 9.29 84.04 0.78 -17.90 16 9 H 0.07 4.10 7.40 -2.91 -0.02 4.08 16 10 C 0.00 0.12 5.14 84.93 0.44 0.56 16 11 N -0.89 -44.96 10.56 21.66 0.23 -44.73 16 12 Si 0.98 41.22 29.57 68.60 2.03 43.25 16 13 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 14 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 15 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 16 C -0.06 -1.72 4.40 -19.87 -0.09 -1.81 16 17 C -0.04 -1.01 7.93 22.27 0.18 -0.83 16 18 C -0.11 -2.26 10.05 22.27 0.22 -2.04 16 19 C -0.05 -1.19 9.56 22.27 0.21 -0.97 16 20 C -0.06 -1.73 6.85 36.37 0.25 -1.48 16 21 N 0.03 1.03 4.45 -46.47 -0.21 0.83 16 22 O -0.17 -4.92 18.45 18.89 0.35 -4.57 16 23 O -0.19 -6.16 18.45 18.89 0.35 -5.82 16 24 C -0.06 -1.57 9.18 22.27 0.20 -1.36 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.05 1.48 7.40 -2.39 -0.02 1.46 16 27 H 0.08 2.19 4.59 -2.39 -0.01 2.17 16 28 H 0.06 2.40 6.50 -2.39 -0.02 2.39 16 29 H 0.05 2.09 7.13 -2.39 -0.02 2.07 16 30 H 0.07 2.21 5.75 -2.38 -0.01 2.20 16 31 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 32 H 0.13 3.83 7.52 -2.91 -0.02 3.81 16 33 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.17 2.91 7.61 -2.91 -0.02 2.88 16 35 H 0.16 3.96 7.50 -2.91 -0.02 3.94 16 Total: -1.00 -65.71 300.70 6.14 -59.57 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.13 Total: 12.91 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 4.30 Total: -4.82 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -1.97 Total: -67.95 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: 0.65 Total: -42.96 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -65.71 6.14 -59.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578418469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.095 kcal (2) G-P(sol) polarization free energy of solvation -65.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds