Wall clock time and date at job start Tue Mar 31 2020 00:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 C 1.50702 * 109.46972 * 239.99775 * 2 1 3 5 5 O 1.21292 * 119.99800 * 261.85096 * 4 2 1 6 6 N 1.34775 * 120.00048 * 81.85677 * 4 2 1 7 7 C 1.46497 * 120.00115 * 183.47070 * 6 4 2 8 8 C 1.37099 * 119.99843 * 3.46592 * 6 4 2 9 9 H 1.07995 * 120.00154 * 350.08975 * 8 6 4 10 10 C 1.38950 * 119.99707 * 170.09719 * 8 6 4 11 11 N 1.31410 * 120.00393 * 7.14449 * 10 8 6 12 12 Si 1.86804 * 119.99702 * 187.15223 * 10 8 6 13 13 H 1.48499 * 109.47278 * 59.99805 * 12 10 8 14 14 H 1.48504 * 109.47061 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47116 * 299.99540 * 12 10 8 16 16 C 1.50700 * 109.46896 * 119.99908 * 2 1 3 17 17 C 1.38259 * 120.00264 * 59.72704 * 16 2 1 18 18 C 1.38206 * 120.00139 * 179.76481 * 17 16 2 19 19 C 1.38257 * 120.00046 * 0.50637 * 18 17 16 20 20 C 1.38220 * 119.99856 * 359.74767 * 19 18 17 21 21 N 1.48018 * 119.99879 * 179.97438 * 20 19 18 22 22 O 1.21801 * 120.00015 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00218 * 0.02562 * 21 20 19 24 24 C 1.38214 * 119.99810 * 240.00081 * 16 2 1 25 25 H 1.08996 * 109.47303 * 294.68724 * 1 2 3 26 26 H 1.08998 * 109.47044 * 54.68572 * 1 2 3 27 27 H 1.09005 * 109.46933 * 174.68071 * 1 2 3 28 28 H 1.09003 * 109.46877 * 3.40048 * 7 6 4 29 29 H 1.09004 * 109.46992 * 123.39629 * 7 6 4 30 30 H 1.08999 * 109.47539 * 243.39851 * 7 6 4 31 31 H 0.96996 * 120.00614 * 180.02562 * 11 10 8 32 32 H 1.08007 * 119.99490 * 0.02562 * 17 16 2 33 33 H 1.08001 * 120.00114 * 180.23127 * 18 17 16 34 34 H 1.07998 * 120.00235 * 179.72465 * 19 18 17 35 35 H 1.08001 * 119.99973 * 359.97438 * 24 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.3748 -1.8720 -1.1627 6 7 2.1011 -0.0551 -2.4061 7 6 2.5168 -0.7659 -3.6178 8 6 1.7818 1.2767 -2.4682 9 1 1.3245 1.7625 -1.6190 10 6 2.0464 2.0014 -3.6238 11 7 2.4712 1.3845 -4.7036 12 14 1.7986 3.8529 -3.6425 13 1 2.6720 4.4796 -2.6180 14 1 2.1487 4.3856 -4.9837 15 1 0.3786 4.1652 -3.3405 16 6 2.0323 -0.7104 1.2305 17 6 1.6936 -2.0324 1.4522 18 6 2.1583 -2.6853 2.5782 19 6 2.9532 -2.0134 3.4883 20 6 3.2874 -0.6903 3.2693 21 7 4.1379 0.0292 4.2439 22 8 4.4321 1.1954 4.0513 23 8 4.5436 -0.5448 5.2386 24 6 2.8269 -0.0387 2.1403 25 1 -0.3634 0.4292 0.9337 26 1 -0.3633 0.5940 -0.8386 27 1 -0.3633 -1.0233 -0.0953 28 1 2.6695 -1.8201 -3.3862 29 1 1.7428 -0.6696 -4.3792 30 1 3.4474 -0.3371 -3.9894 31 1 2.6563 1.8904 -5.5102 32 1 1.0694 -2.5561 0.7432 33 1 1.8968 -3.7191 2.7495 34 1 3.3126 -2.5223 4.3704 35 1 3.0881 0.9952 1.9691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578418470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:11 Heat of formation + Delta-G solvation = -4.742895 kcal Electronic energy + Delta-G solvation = -21472.077542 eV Core-core repulsion = 18052.994528 eV Total energy + Delta-G solvation = -3419.083014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.03603 -39.90604 -38.32272 -36.43477 -35.03638 -33.85784 -31.76380 -31.53121 -29.74449 -26.64292 -26.35182 -24.99790 -23.78262 -22.52879 -21.40973 -19.45789 -18.64898 -18.49267 -17.39666 -16.80528 -16.62086 -16.28763 -15.14105 -14.70341 -14.39271 -14.21733 -14.14187 -13.42534 -13.24043 -12.81425 -12.35694 -12.11488 -12.00268 -11.73714 -11.54277 -11.44514 -11.23933 -11.06937 -11.03085 -10.94168 -10.84350 -10.69545 -10.53471 -10.38943 -9.40140 -9.21668 -9.08051 -8.46230 -8.06072 -6.44320 -4.05784 0.02345 1.07737 1.54455 1.56801 3.01248 3.10595 3.11263 3.43137 3.70725 3.93273 4.37496 4.57230 4.73099 4.90994 4.96980 5.06632 5.12108 5.25111 5.58053 5.62423 5.64249 5.82657 5.92421 6.10407 6.16100 6.19604 6.33795 6.43304 6.58693 6.65918 6.78877 7.12326 7.23992 7.36623 7.60198 7.78207 8.21448 8.89726 9.35097 9.73741 10.48715 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020527 B = 0.005042 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.698174 B = 5551.911637 C = 6317.805680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 H 0.103 0.897 4 C 0.450 3.550 5 O -0.613 6.613 6 N -0.434 5.434 7 C 0.121 3.879 8 C -0.339 4.339 9 H 0.103 0.897 10 C 0.038 3.962 11 N -0.870 5.870 12 Si 0.925 3.075 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.271 1.271 16 C -0.050 4.050 17 C -0.022 4.022 18 C -0.126 4.126 19 C -0.064 4.064 20 C -0.053 4.053 21 N 0.034 4.966 22 O -0.166 6.166 23 O -0.174 6.174 24 C -0.053 4.053 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.270 0.730 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 -3.075 9.470 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.083 4.083 3 H 0.121 0.879 4 C 0.238 3.762 5 O -0.502 6.502 6 N -0.150 5.150 7 C -0.021 4.021 8 C -0.466 4.466 9 H 0.120 0.880 10 C -0.167 4.167 11 N -0.509 5.509 12 Si 0.751 3.249 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.197 1.197 16 C -0.051 4.051 17 C -0.041 4.041 18 C -0.144 4.144 19 C -0.084 4.084 20 C -0.136 4.136 21 N 0.552 4.448 22 O -0.382 6.382 23 O -0.387 6.387 24 C -0.072 4.072 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.795 -3.903 8.757 10.311 hybrid contribution 0.232 1.295 -0.017 1.315 sum -3.563 -2.608 8.740 9.793 Atomic orbital electron populations 1.21695 0.92445 1.02551 1.02496 1.20123 0.97353 1.00455 0.90389 0.87923 1.19502 0.85155 0.87208 0.84382 1.90515 1.56626 1.17810 1.85216 1.43672 1.55632 1.09416 1.06302 1.21589 1.01657 0.93043 0.85830 1.19728 1.41065 0.84025 1.01815 0.87983 1.25352 0.95793 1.00615 0.94946 1.70199 1.43051 1.35749 1.01866 0.86016 0.79034 0.81890 0.77937 1.19567 1.20649 1.19661 1.19689 0.96130 0.94363 0.94952 1.21603 0.94750 0.93396 0.94303 1.21185 0.98437 1.00720 0.94082 1.20957 0.95861 0.91253 1.00292 1.20990 1.04156 0.94420 0.94028 1.43666 0.99318 1.00892 1.00956 1.94535 1.61318 1.00549 1.81782 1.94490 1.56394 1.69423 1.18431 1.20968 0.94159 1.01476 0.90585 0.92499 0.90500 0.92475 0.94636 0.91983 0.91279 0.91945 0.83639 0.83898 0.83545 0.83162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.76 37.16 0.33 -1.67 16 2 C -0.06 -1.08 2.05 -92.92 -0.19 -1.27 16 3 H 0.10 1.79 6.38 -51.93 -0.33 1.45 16 4 C 0.45 9.94 6.75 -10.99 -0.07 9.87 16 5 O -0.61 -14.66 13.94 5.55 0.08 -14.59 16 6 N -0.43 -10.40 3.03 -122.19 -0.37 -10.77 16 7 C 0.12 2.92 8.87 59.85 0.53 3.45 16 8 C -0.34 -7.98 8.88 -14.93 -0.13 -8.11 16 9 H 0.10 2.19 5.43 -52.49 -0.28 1.90 16 10 C 0.04 0.90 5.46 -17.47 -0.10 0.81 16 11 N -0.87 -21.62 9.50 55.50 0.53 -21.09 16 12 Si 0.93 18.44 29.56 -169.99 -5.02 13.42 16 13 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 14 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 15 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 16 C -0.05 -0.80 4.61 -104.62 -0.48 -1.28 16 17 C -0.02 -0.32 7.92 -39.59 -0.31 -0.64 16 18 C -0.13 -1.51 10.05 -39.59 -0.40 -1.90 16 19 C -0.06 -0.82 9.56 -39.58 -0.38 -1.20 16 20 C -0.05 -0.80 6.85 -79.95 -0.55 -1.35 16 21 N 0.03 0.56 4.45 33.96 0.15 0.71 16 22 O -0.17 -2.86 18.45 -29.46 -0.54 -3.40 16 23 O -0.17 -2.81 18.45 -29.46 -0.54 -3.36 16 24 C -0.05 -0.81 9.18 -39.58 -0.36 -1.18 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.21 7.29 -51.93 -0.38 0.83 16 27 H 0.06 0.82 7.57 -51.93 -0.39 0.43 16 28 H 0.04 0.83 6.92 -51.93 -0.36 0.47 16 29 H 0.06 1.52 7.26 -51.93 -0.38 1.14 16 30 H 0.07 1.74 6.87 -51.93 -0.36 1.38 16 31 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 32 H 0.15 2.12 7.04 -52.48 -0.37 1.75 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.15 1.56 7.61 -52.49 -0.40 1.16 16 35 H 0.15 2.21 7.50 -52.49 -0.39 1.81 16 LS Contribution 302.01 15.07 4.55 4.55 Total: -1.00 -27.69 302.01 -6.92 -34.61 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -3.62 Total: 4.38 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.12 Total: -4.47 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.31 Total: -31.15 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.01 Total: -21.34 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.69 -6.92 -34.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578418470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.868 kcal (2) G-P(sol) polarization free energy of solvation -27.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds