Wall clock time and date at job start Tue Mar 31 2020 00:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47058 * 2 1 4 4 C 1.50702 * 109.46972 * 239.99775 * 2 1 3 5 5 O 1.21292 * 119.99800 * 261.85096 * 4 2 1 6 6 N 1.34775 * 120.00048 * 81.85677 * 4 2 1 7 7 C 1.46497 * 120.00115 * 183.47070 * 6 4 2 8 8 C 1.37099 * 119.99843 * 3.46592 * 6 4 2 9 9 H 1.07995 * 120.00154 * 350.08975 * 8 6 4 10 10 C 1.38950 * 119.99707 * 170.09719 * 8 6 4 11 11 N 1.31410 * 120.00393 * 7.14449 * 10 8 6 12 12 Si 1.86804 * 119.99702 * 187.15223 * 10 8 6 13 13 H 1.48499 * 109.47278 * 59.99805 * 12 10 8 14 14 H 1.48504 * 109.47061 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47116 * 299.99540 * 12 10 8 16 16 C 1.50700 * 109.46896 * 119.99908 * 2 1 3 17 17 C 1.38259 * 120.00264 * 59.72704 * 16 2 1 18 18 C 1.38206 * 120.00139 * 179.76481 * 17 16 2 19 19 C 1.38257 * 120.00046 * 0.50637 * 18 17 16 20 20 C 1.38220 * 119.99856 * 359.74767 * 19 18 17 21 21 N 1.48018 * 119.99879 * 179.97438 * 20 19 18 22 22 O 1.21801 * 120.00015 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00218 * 0.02562 * 21 20 19 24 24 C 1.38214 * 119.99810 * 240.00081 * 16 2 1 25 25 H 1.08996 * 109.47303 * 294.68724 * 1 2 3 26 26 H 1.08998 * 109.47044 * 54.68572 * 1 2 3 27 27 H 1.09005 * 109.46933 * 174.68071 * 1 2 3 28 28 H 1.09003 * 109.46877 * 3.40048 * 7 6 4 29 29 H 1.09004 * 109.46992 * 123.39629 * 7 6 4 30 30 H 1.08999 * 109.47539 * 243.39851 * 7 6 4 31 31 H 0.96996 * 120.00614 * 180.02562 * 11 10 8 32 32 H 1.08007 * 119.99490 * 0.02562 * 17 16 2 33 33 H 1.08001 * 120.00114 * 180.23127 * 18 17 16 34 34 H 1.07998 * 120.00235 * 179.72465 * 19 18 17 35 35 H 1.08001 * 119.99973 * 359.97438 * 24 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.3748 -1.8720 -1.1627 6 7 2.1011 -0.0551 -2.4061 7 6 2.5168 -0.7659 -3.6178 8 6 1.7818 1.2767 -2.4682 9 1 1.3245 1.7625 -1.6190 10 6 2.0464 2.0014 -3.6238 11 7 2.4712 1.3845 -4.7036 12 14 1.7986 3.8529 -3.6425 13 1 2.6720 4.4796 -2.6180 14 1 2.1487 4.3856 -4.9837 15 1 0.3786 4.1652 -3.3405 16 6 2.0323 -0.7104 1.2305 17 6 1.6936 -2.0324 1.4522 18 6 2.1583 -2.6853 2.5782 19 6 2.9532 -2.0134 3.4883 20 6 3.2874 -0.6903 3.2693 21 7 4.1379 0.0292 4.2439 22 8 4.4321 1.1954 4.0513 23 8 4.5436 -0.5448 5.2386 24 6 2.8269 -0.0387 2.1403 25 1 -0.3634 0.4292 0.9337 26 1 -0.3633 0.5940 -0.8386 27 1 -0.3633 -1.0233 -0.0953 28 1 2.6695 -1.8201 -3.3862 29 1 1.7428 -0.6696 -4.3792 30 1 3.4474 -0.3371 -3.9894 31 1 2.6563 1.8904 -5.5102 32 1 1.0694 -2.5561 0.7432 33 1 1.8968 -3.7191 2.7495 34 1 3.3126 -2.5223 4.3704 35 1 3.0881 0.9952 1.9691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578418470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:10 Heat of formation + Delta-G solvation = -18.327631 kcal Electronic energy + Delta-G solvation = -21472.666620 eV Core-core repulsion = 18052.994528 eV Total energy + Delta-G solvation = -3419.672093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.26885 -41.28523 -39.83010 -37.69410 -36.82068 -35.23048 -33.41436 -32.80266 -30.97354 -28.43668 -27.57321 -26.68692 -25.16237 -23.64957 -22.74953 -21.07477 -20.06649 -19.76145 -18.63656 -18.40975 -18.13289 -17.48304 -16.50610 -16.27529 -15.94014 -15.88246 -15.40192 -14.79217 -14.59060 -14.26022 -13.77351 -13.45062 -13.35274 -13.18869 -13.05024 -12.72785 -12.71291 -12.66035 -12.47890 -12.31880 -12.30442 -12.16523 -12.12649 -11.93869 -11.02326 -10.51718 -10.38226 -10.03621 -9.93190 -8.24727 -5.91704 -1.18585 -0.00920 0.35530 0.38107 1.43304 1.47898 1.56598 1.97796 2.24458 2.35171 2.96014 3.13747 3.35971 3.52308 3.82559 3.97653 3.99128 4.07009 4.23126 4.36172 4.43235 4.64579 4.73462 4.84042 4.92530 4.94826 5.06635 5.13917 5.14602 5.24446 5.37451 5.42280 5.45547 5.56781 5.76836 6.37862 6.50518 7.08007 7.55924 7.93528 8.69883 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020527 B = 0.005042 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.698174 B = 5551.911637 C = 6317.805680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 H 0.100 0.900 4 C 0.447 3.553 5 O -0.633 6.633 6 N -0.455 5.455 7 C 0.137 3.863 8 C -0.351 4.351 9 H 0.120 0.880 10 C -0.009 4.009 11 N -0.903 5.903 12 Si 0.990 3.010 13 H -0.268 1.268 14 H -0.286 1.286 15 H -0.259 1.259 16 C -0.067 4.067 17 C -0.028 4.028 18 C -0.109 4.109 19 C -0.053 4.053 20 C -0.066 4.066 21 N 0.035 4.965 22 O -0.203 6.203 23 O -0.160 6.160 24 C -0.060 4.060 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.269 0.731 32 H 0.143 0.857 33 H 0.184 0.816 34 H 0.174 0.826 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 -3.490 11.370 12.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.076 4.076 3 H 0.119 0.881 4 C 0.236 3.764 5 O -0.523 6.523 6 N -0.172 5.172 7 C -0.007 4.007 8 C -0.478 4.478 9 H 0.138 0.862 10 C -0.210 4.210 11 N -0.542 5.542 12 Si 0.814 3.186 13 H -0.193 1.193 14 H -0.212 1.212 15 H -0.184 1.184 16 C -0.068 4.068 17 C -0.047 4.047 18 C -0.128 4.128 19 C -0.072 4.072 20 C -0.149 4.149 21 N 0.549 4.451 22 O -0.410 6.410 23 O -0.379 6.379 24 C -0.079 4.079 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.161 0.839 33 H 0.201 0.799 34 H 0.191 0.809 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.678 -4.257 10.648 12.385 hybrid contribution 0.514 1.234 -0.533 1.439 sum -4.164 -3.023 10.116 11.349 Atomic orbital electron populations 1.21672 0.90388 1.02880 1.03584 1.20043 0.98970 0.99772 0.88792 0.88150 1.20348 0.83777 0.87119 0.85150 1.90483 1.57066 1.18872 1.85842 1.43927 1.56587 1.09955 1.06729 1.21302 1.00415 0.92784 0.86161 1.20164 1.41098 0.83989 1.02523 0.86219 1.26215 0.95586 1.04659 0.94574 1.70318 1.44385 1.37134 1.02367 0.85017 0.79447 0.76708 0.77473 1.19270 1.21175 1.18350 1.19570 0.97410 0.95200 0.94628 1.21737 0.94819 0.92866 0.95249 1.21577 0.96677 1.02177 0.92324 1.21357 0.94720 0.90112 1.01020 1.21162 1.04602 0.95303 0.93823 1.43864 0.99288 1.00819 1.01087 1.94543 1.62787 1.01267 1.82376 1.94460 1.55827 1.69149 1.18475 1.20935 0.94365 1.01635 0.90984 0.89563 0.91601 0.92126 0.94797 0.93098 0.93010 0.92127 0.83884 0.79866 0.80882 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 8.76 71.98 0.63 -2.96 16 2 C -0.05 -1.86 2.05 -12.28 -0.03 -1.88 16 3 H 0.10 3.43 6.38 -2.39 -0.02 3.42 16 4 C 0.45 19.71 6.75 87.66 0.59 20.30 16 5 O -0.63 -30.18 13.94 -3.07 -0.04 -30.23 16 6 N -0.46 -22.07 3.03 -658.89 -1.99 -24.06 16 7 C 0.14 6.77 8.87 127.77 1.13 7.90 16 8 C -0.35 -16.52 8.88 84.04 0.75 -15.77 16 9 H 0.12 5.05 5.43 -2.91 -0.02 5.03 16 10 C -0.01 -0.43 5.46 84.93 0.46 0.03 16 11 N -0.90 -45.80 9.50 21.66 0.21 -45.59 16 12 Si 0.99 37.54 29.56 68.60 2.03 39.57 16 13 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 14 H -0.29 -10.99 7.11 99.48 0.71 -10.28 16 15 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 16 C -0.07 -2.03 4.61 -19.87 -0.09 -2.12 16 17 C -0.03 -0.75 7.92 22.27 0.18 -0.58 16 18 C -0.11 -2.19 10.05 22.27 0.22 -1.97 16 19 C -0.05 -1.16 9.56 22.27 0.21 -0.95 16 20 C -0.07 -1.85 6.85 36.38 0.25 -1.60 16 21 N 0.03 1.09 4.45 -46.46 -0.21 0.88 16 22 O -0.20 -6.92 18.45 18.88 0.35 -6.57 16 23 O -0.16 -4.84 18.45 18.89 0.35 -4.49 16 24 C -0.06 -1.78 9.18 22.27 0.20 -1.58 16 25 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 1.99 7.29 -2.39 -0.02 1.98 16 27 H 0.06 1.64 7.57 -2.38 -0.02 1.63 16 28 H 0.03 1.63 6.92 -2.39 -0.02 1.61 16 29 H 0.05 2.57 7.26 -2.38 -0.02 2.56 16 30 H 0.05 2.70 6.87 -2.39 -0.02 2.68 16 31 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 32 H 0.14 3.87 7.04 -2.91 -0.02 3.85 16 33 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.17 2.88 7.61 -2.91 -0.02 2.85 16 35 H 0.15 4.33 7.50 -2.91 -0.02 4.31 16 Total: -1.00 -59.80 302.01 6.33 -53.47 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 1.13 Total: 18.19 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 4.52 Total: -1.17 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -1.99 Total: -68.77 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: 0.65 Total: -41.29 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -59.80 6.33 -53.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578418470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.147 kcal (2) G-P(sol) polarization free energy of solvation -59.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds