Wall clock time and date at job start Tue Mar 31 2020 00:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46729 * 2 1 4 4 N 1.46497 * 109.47706 * 120.00197 * 2 1 3 5 5 S 1.65590 * 120.00256 * 144.99902 * 4 2 1 6 6 O 1.42102 * 106.40564 * 311.46572 * 5 4 2 7 7 O 1.42099 * 106.40264 * 178.54150 * 5 4 2 8 8 N 1.65600 * 107.21954 * 65.00463 * 5 4 2 9 9 C 1.47290 * 125.79191 * 270.00102 * 8 5 4 10 10 C 1.54325 * 107.30599 * 178.92104 * 9 8 5 11 11 C 1.55154 * 102.94303 * 337.81911 * 10 9 8 12 12 O 1.42902 * 111.03861 * 277.41104 * 11 10 9 13 13 C 1.50701 * 111.00686 * 153.57472 * 11 10 9 14 14 H 1.07992 * 120.00207 * 247.80719 * 13 11 10 15 15 C 1.37878 * 119.99440 * 67.80199 * 13 11 10 16 16 N 1.31506 * 120.00648 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99600 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47281 * 59.99816 * 17 15 13 19 19 H 1.48496 * 109.47147 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47181 * 300.00137 * 17 15 13 21 21 C 1.47425 * 125.65067 * 89.99700 * 8 5 4 22 22 H 1.08996 * 109.46761 * 299.99702 * 1 2 3 23 23 H 1.09000 * 109.47352 * 59.99942 * 1 2 3 24 24 H 1.09001 * 109.46794 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47150 * 240.00880 * 2 1 3 26 26 H 1.09002 * 109.46825 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47769 * 300.00028 * 3 2 1 28 28 H 1.09005 * 109.47059 * 60.00708 * 3 2 1 29 29 H 0.97003 * 119.99495 * 325.00269 * 4 2 1 30 30 H 1.09004 * 109.85762 * 59.49720 * 9 8 5 31 31 H 1.08995 * 110.00297 * 298.42667 * 9 8 5 32 32 H 1.09002 * 110.72180 * 219.45147 * 10 9 8 33 33 H 1.08994 * 110.87038 * 96.25177 * 10 9 8 34 34 H 0.96699 * 114.00425 * 292.22246 * 12 11 10 35 35 H 0.97002 * 120.00229 * 179.97438 * 16 15 13 36 36 H 1.09002 * 110.36696 * 85.26398 * 21 8 5 37 37 H 1.08995 * 110.36608 * 323.05234 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0185 -0.6906 1.1961 5 16 3.4020 -1.5974 1.1216 6 8 3.2729 -2.4336 -0.0201 7 8 3.6233 -2.1002 2.4322 8 7 4.6520 -0.5593 0.8019 9 6 5.1346 -0.1786 -0.5366 10 6 6.2901 0.8253 -0.3396 11 6 6.0231 1.3879 1.0814 12 8 5.0500 2.4339 1.0446 13 6 7.3008 1.8651 1.7224 14 1 7.7044 1.3422 2.5767 15 6 7.9544 2.9694 1.2179 16 7 7.4627 3.6065 0.1779 17 14 9.5386 3.5605 2.0120 18 1 10.5565 2.4813 1.9491 19 1 10.0396 4.7557 1.2870 20 1 9.2792 3.9142 3.4308 21 6 5.4685 0.1392 1.8113 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5137 -0.8901 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9565 -0.8900 28 1 1.6766 1.9564 0.8901 29 1 1.5314 -0.6167 2.0317 30 1 4.3287 0.2899 -1.1014 31 1 5.4955 -1.0596 -1.0673 32 1 6.2419 1.6198 -1.0843 33 1 7.2548 0.3196 -0.3792 34 1 5.3519 3.2363 0.5973 35 1 7.9223 4.3836 -0.1767 36 1 6.2863 -0.4992 2.1456 37 1 4.8508 0.4379 2.6582 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592077402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:06 Heat of formation + Delta-G solvation = -133.925969 kcal Electronic energy + Delta-G solvation = -21605.235085 eV Core-core repulsion = 18315.994224 eV Total energy + Delta-G solvation = -3289.240862 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.06421 -37.05312 -36.46527 -35.52054 -34.25741 -32.14094 -30.36089 -29.24004 -28.29196 -26.98944 -24.85190 -21.56313 -21.31605 -19.83513 -19.14627 -17.81660 -17.08580 -16.92283 -15.95592 -15.00237 -14.88723 -14.49062 -14.21645 -14.09678 -13.47351 -13.25618 -12.93529 -12.50173 -12.40673 -12.11732 -11.90590 -11.82625 -11.77457 -11.71649 -11.44270 -11.35739 -11.21793 -11.02024 -10.80352 -10.67946 -10.56062 -10.44687 -10.02088 -9.48765 -9.35437 -8.70163 -8.37608 -8.18632 -6.30783 -4.37957 0.95735 3.20537 3.22738 3.25632 3.29802 3.90859 4.24684 4.64556 4.88664 4.96505 5.13110 5.23918 5.40457 5.53904 5.74101 5.82951 5.85159 5.90450 5.99637 6.03938 6.14195 6.19326 6.34604 6.41627 6.60119 6.73138 6.83653 6.96800 6.99856 7.24091 7.33851 7.36687 7.73332 8.00517 8.63809 9.30829 9.45855 10.76608 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028119 B = 0.006010 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.526107 B = 4657.829138 C = 5105.447040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.144 3.856 3 C -0.181 4.181 4 N -1.124 6.124 5 S 2.802 3.198 6 O -0.987 6.987 7 O -0.985 6.985 8 N -1.012 6.012 9 C 0.122 3.878 10 C -0.135 4.135 11 C 0.253 3.747 12 O -0.582 6.582 13 C -0.536 4.536 14 H 0.064 0.936 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.903 3.097 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.138 3.862 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.411 0.589 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.385 0.615 35 H 0.269 0.731 36 H 0.071 0.929 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 -3.475 -2.044 10.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 C -0.239 4.239 4 N -0.883 5.883 5 S 2.811 3.189 6 O -0.971 6.971 7 O -0.969 6.969 8 N -0.853 5.853 9 C -0.003 4.003 10 C -0.175 4.175 11 C 0.211 3.789 12 O -0.392 6.392 13 C -0.575 4.575 14 H 0.082 0.918 15 C -0.129 4.129 16 N -0.538 5.538 17 Si 0.730 3.270 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.014 3.986 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.244 0.756 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.237 0.763 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.775 -4.809 -1.901 11.059 hybrid contribution 0.958 1.295 0.351 1.649 sum -8.817 -3.514 -1.550 9.617 Atomic orbital electron populations 1.22046 0.94557 1.02173 1.02495 1.20767 0.95093 0.93725 0.86754 1.22485 1.04803 0.94800 1.01830 1.56113 1.44253 1.69280 1.18646 1.01183 0.72001 0.72923 0.72785 1.93568 1.86280 1.64362 1.52881 1.93589 1.85184 1.78414 1.39762 1.58799 1.47600 1.64059 1.14887 1.21852 0.97899 0.98192 0.82363 1.23174 0.95363 0.97074 1.01881 1.19556 0.86259 0.83663 0.89381 1.86045 1.43297 1.27795 1.82080 1.21488 1.07367 1.13124 1.15484 0.91758 1.24970 0.97776 0.95897 0.94283 1.69542 1.40448 1.20485 1.23298 0.86481 0.82838 0.78147 0.79509 1.20098 1.21194 1.20067 1.22091 0.93383 0.93228 0.89914 0.92149 0.91421 0.92290 0.89718 0.89044 0.92276 0.92245 0.75564 0.92835 0.92746 0.90137 0.91517 0.76336 0.92081 0.91103 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.44 37.16 0.35 -1.18 16 2 C 0.14 1.84 3.54 -67.93 -0.24 1.60 16 3 C -0.18 -2.47 9.47 37.16 0.35 -2.12 16 4 N -1.12 -15.64 5.53 -4.89 -0.03 -15.67 16 5 S 2.80 48.68 6.37 -107.50 -0.69 47.99 16 6 O -0.99 -18.91 17.07 -57.17 -0.98 -19.88 16 7 O -0.99 -19.46 17.72 -57.17 -1.01 -20.47 16 8 N -1.01 -18.71 3.42 -111.22 -0.38 -19.09 16 9 C 0.12 2.22 6.48 -2.92 -0.02 2.20 16 10 C -0.14 -2.81 5.64 -24.90 -0.14 -2.95 16 11 C 0.25 5.72 0.89 -89.62 -0.08 5.64 16 12 O -0.58 -13.36 11.86 -35.23 -0.42 -13.77 16 13 C -0.54 -13.38 8.25 -34.44 -0.28 -13.66 16 14 H 0.06 1.60 7.77 -52.49 -0.41 1.19 16 15 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 16 N -0.90 -22.31 10.79 55.43 0.60 -21.71 16 17 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.14 2.85 6.15 -2.53 -0.02 2.84 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 1.12 7.50 -51.93 -0.39 0.73 16 26 H 0.09 1.50 4.54 -51.93 -0.24 1.27 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.41 4.91 8.84 -34.47 -0.30 4.60 16 30 H 0.05 0.89 6.86 -51.93 -0.36 0.54 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.74 7.85 -51.93 -0.41 1.33 16 33 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 34 H 0.38 9.21 6.93 45.56 0.32 9.53 16 35 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 36 H 0.07 1.44 8.01 -51.93 -0.42 1.03 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 310.42 15.07 4.68 4.68 Total: -1.00 -28.27 310.42 -8.13 -36.40 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -4.71 Total: 12.76 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -0.17 Total: -5.93 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.19 Total: -56.47 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -2.41 Total: -54.13 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 48.68 SS G_CDS: -0.69 Total: 47.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.27 -8.13 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592077402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.527 kcal (2) G-P(sol) polarization free energy of solvation -28.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds