Wall clock time and date at job start Tue Mar 31 2020 00:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46729 * 2 1 4 4 N 1.46497 * 109.47706 * 120.00197 * 2 1 3 5 5 S 1.65590 * 120.00256 * 144.99902 * 4 2 1 6 6 O 1.42102 * 106.40564 * 311.46572 * 5 4 2 7 7 O 1.42099 * 106.40264 * 178.54150 * 5 4 2 8 8 N 1.65600 * 107.21954 * 65.00463 * 5 4 2 9 9 C 1.47290 * 125.79191 * 270.00102 * 8 5 4 10 10 C 1.54325 * 107.30599 * 178.92104 * 9 8 5 11 11 C 1.55154 * 102.94303 * 337.81911 * 10 9 8 12 12 O 1.42902 * 111.03861 * 277.41104 * 11 10 9 13 13 C 1.50701 * 111.00686 * 153.57472 * 11 10 9 14 14 H 1.07992 * 120.00207 * 247.80719 * 13 11 10 15 15 C 1.37878 * 119.99440 * 67.80199 * 13 11 10 16 16 N 1.31506 * 120.00648 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99600 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47281 * 59.99816 * 17 15 13 19 19 H 1.48496 * 109.47147 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47181 * 300.00137 * 17 15 13 21 21 C 1.47425 * 125.65067 * 89.99700 * 8 5 4 22 22 H 1.08996 * 109.46761 * 299.99702 * 1 2 3 23 23 H 1.09000 * 109.47352 * 59.99942 * 1 2 3 24 24 H 1.09001 * 109.46794 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47150 * 240.00880 * 2 1 3 26 26 H 1.09002 * 109.46825 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47769 * 300.00028 * 3 2 1 28 28 H 1.09005 * 109.47059 * 60.00708 * 3 2 1 29 29 H 0.97003 * 119.99495 * 325.00269 * 4 2 1 30 30 H 1.09004 * 109.85762 * 59.49720 * 9 8 5 31 31 H 1.08995 * 110.00297 * 298.42667 * 9 8 5 32 32 H 1.09002 * 110.72180 * 219.45147 * 10 9 8 33 33 H 1.08994 * 110.87038 * 96.25177 * 10 9 8 34 34 H 0.96699 * 114.00425 * 292.22246 * 12 11 10 35 35 H 0.97002 * 120.00229 * 179.97438 * 16 15 13 36 36 H 1.09002 * 110.36696 * 85.26398 * 21 8 5 37 37 H 1.08995 * 110.36608 * 323.05234 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0185 -0.6906 1.1961 5 16 3.4020 -1.5974 1.1216 6 8 3.2729 -2.4336 -0.0201 7 8 3.6233 -2.1002 2.4322 8 7 4.6520 -0.5593 0.8019 9 6 5.1346 -0.1786 -0.5366 10 6 6.2901 0.8253 -0.3396 11 6 6.0231 1.3879 1.0814 12 8 5.0500 2.4339 1.0446 13 6 7.3008 1.8651 1.7224 14 1 7.7044 1.3422 2.5767 15 6 7.9544 2.9694 1.2179 16 7 7.4627 3.6065 0.1779 17 14 9.5386 3.5605 2.0120 18 1 10.5565 2.4813 1.9491 19 1 10.0396 4.7557 1.2870 20 1 9.2792 3.9142 3.4308 21 6 5.4685 0.1392 1.8113 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5137 -0.8901 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9565 -0.8900 28 1 1.6766 1.9564 0.8901 29 1 1.5314 -0.6167 2.0317 30 1 4.3287 0.2899 -1.1014 31 1 5.4955 -1.0596 -1.0673 32 1 6.2419 1.6198 -1.0843 33 1 7.2548 0.3196 -0.3792 34 1 5.3519 3.2363 0.5973 35 1 7.9223 4.3836 -0.1767 36 1 6.2863 -0.4992 2.1456 37 1 4.8508 0.4379 2.6582 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592077402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:06 Heat of formation + Delta-G solvation = -156.521211 kcal Electronic energy + Delta-G solvation = -21606.214889 eV Core-core repulsion = 18315.994224 eV Total energy + Delta-G solvation = -3290.220665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.71560 -38.45993 -37.61586 -37.00926 -35.97327 -34.02739 -31.45249 -30.89622 -29.94216 -27.93389 -26.67037 -23.11543 -22.37203 -21.55171 -20.51984 -19.38359 -18.68080 -18.46105 -17.24094 -16.87121 -16.32349 -15.96821 -15.79675 -15.20910 -15.09388 -14.58308 -14.28472 -14.08071 -13.72769 -13.56580 -13.41121 -13.32336 -13.23903 -13.10789 -12.98272 -12.74298 -12.53165 -12.50256 -12.33718 -12.21006 -12.09916 -11.85431 -11.71222 -11.20207 -10.58716 -10.52379 -10.02970 -9.86177 -8.19135 -6.32105 -0.44171 1.46022 1.48229 1.54368 1.87690 2.42834 2.54603 3.05742 3.24670 3.77752 3.90598 4.14981 4.22036 4.29099 4.32985 4.41197 4.50788 4.64988 4.73928 4.86120 4.97025 5.00699 5.04354 5.21666 5.27120 5.28470 5.41822 5.44498 5.55289 5.60968 5.66756 5.86427 6.13045 6.17462 6.71409 7.39142 7.57255 8.86184 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028119 B = 0.006010 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.526107 B = 4657.829138 C = 5105.447040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.138 3.862 3 C -0.178 4.178 4 N -1.112 6.112 5 S 2.819 3.181 6 O -1.002 7.002 7 O -1.010 7.010 8 N -1.013 6.013 9 C 0.125 3.875 10 C -0.127 4.127 11 C 0.242 3.758 12 O -0.580 6.580 13 C -0.560 4.560 14 H 0.056 0.944 15 C 0.037 3.963 16 N -0.909 5.909 17 Si 0.955 3.045 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.277 1.277 21 C 0.143 3.857 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.422 0.578 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.378 0.622 35 H 0.270 0.730 36 H 0.068 0.932 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 -3.479 -2.350 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.032 3.968 3 C -0.237 4.237 4 N -0.875 5.875 5 S 2.828 3.172 6 O -0.986 6.986 7 O -0.994 6.994 8 N -0.853 5.853 9 C 0.000 4.000 10 C -0.167 4.167 11 C 0.201 3.799 12 O -0.389 6.389 13 C -0.599 4.599 14 H 0.075 0.925 15 C -0.164 4.164 16 N -0.549 5.549 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.203 1.203 21 C 0.018 3.982 22 H 0.088 0.912 23 H 0.103 0.897 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.258 0.742 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.229 0.771 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.808 -4.822 -2.205 12.038 hybrid contribution 1.230 1.317 0.439 1.855 sum -9.577 -3.505 -1.766 10.350 Atomic orbital electron populations 1.22027 0.91943 1.02958 1.03865 1.20957 0.97156 0.92811 0.85884 1.22441 1.02931 0.95640 1.02662 1.55835 1.42912 1.68900 1.19872 1.00560 0.72110 0.72700 0.71806 1.93547 1.86565 1.65060 1.53398 1.93551 1.85751 1.79189 1.40907 1.58759 1.48238 1.63921 1.14417 1.21833 0.97502 0.98104 0.82521 1.22982 0.95991 0.97228 1.00505 1.19661 0.85679 0.84087 0.90516 1.86045 1.43226 1.27634 1.82042 1.21769 1.08671 1.13706 1.15723 0.92537 1.25540 1.00040 0.96022 0.94758 1.69610 1.41070 1.20506 1.23667 0.85659 0.79992 0.77649 0.78527 1.20047 1.20791 1.20279 1.21907 0.93606 0.92585 0.90141 0.91233 0.89655 0.91806 0.90016 0.91812 0.90498 0.92433 0.74213 0.91178 0.91471 0.91285 0.92522 0.77092 0.92010 0.91337 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.44 71.98 0.68 -1.83 16 2 C 0.14 3.22 3.54 44.99 0.16 3.38 16 3 C -0.18 -4.54 9.47 71.98 0.68 -3.86 16 4 N -1.11 -28.94 5.53 -169.38 -0.94 -29.87 16 5 S 2.82 94.56 6.37 -56.49 -0.36 94.20 16 6 O -1.00 -36.86 17.07 -128.00 -2.18 -39.05 16 7 O -1.01 -39.01 17.72 -128.00 -2.27 -41.28 16 8 N -1.01 -36.66 3.42 -505.79 -1.73 -38.39 16 9 C 0.13 4.43 6.48 86.68 0.56 5.00 16 10 C -0.13 -5.29 5.64 31.78 0.18 -5.12 16 11 C 0.24 10.97 0.89 -10.15 -0.01 10.96 16 12 O -0.58 -26.68 11.86 -148.98 -1.77 -28.45 16 13 C -0.56 -28.14 8.25 25.60 0.21 -27.93 16 14 H 0.06 2.85 7.77 -2.91 -0.02 2.82 16 15 C 0.04 1.85 5.30 84.66 0.45 2.29 16 16 N -0.91 -45.09 10.79 21.45 0.23 -44.86 16 17 Si 0.96 40.28 29.54 68.60 2.03 42.31 16 18 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 21 C 0.14 5.87 6.15 86.85 0.53 6.41 16 22 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 1.98 7.50 -2.39 -0.02 1.96 16 26 H 0.06 2.01 4.54 -2.39 -0.01 2.00 16 27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.42 9.23 8.84 -96.75 -0.85 8.38 16 30 H 0.07 2.25 6.86 -2.38 -0.02 2.23 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 3.00 7.85 -2.39 -0.02 2.98 16 33 H 0.06 2.42 8.03 -2.39 -0.02 2.40 16 34 H 0.38 18.26 6.93 -74.06 -0.51 17.74 16 35 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 36 H 0.07 2.81 8.01 -2.39 -0.02 2.79 16 37 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -58.51 310.42 -3.82 -62.34 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.28 Total: 33.74 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 3.45 Total: -10.68 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -2.44 Total: -113.12 kcal Atomic # 8 Polarization: -102.55 SS G_CDS: -6.22 Total: -108.77 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 16 Polarization: 94.56 SS G_CDS: -0.36 Total: 94.20 kcal Total: -58.51 -3.82 -62.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592077402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.185 kcal (2) G-P(sol) polarization free energy of solvation -58.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds