Wall clock time and date at job start Tue Mar 31 2020 00:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 109.47109 * 2 1 4 4 N 1.46500 * 109.46715 * 119.99948 * 2 1 3 5 5 S 1.65598 * 120.00231 * 95.00540 * 4 2 1 6 6 O 1.42102 * 106.39836 * 311.45184 * 5 4 2 7 7 O 1.42098 * 106.40365 * 178.53697 * 5 4 2 8 8 N 1.65594 * 107.22094 * 64.99252 * 5 4 2 9 9 C 1.47428 * 125.64945 * 89.97997 * 8 5 4 10 10 C 1.54903 * 104.83624 * 155.90691 * 9 8 5 11 11 C 1.55159 * 101.58191 * 37.00645 * 10 9 8 12 12 O 1.42899 * 110.71680 * 83.04005 * 11 10 9 13 13 C 1.50694 * 110.72219 * 206.13722 * 11 10 9 14 14 H 1.08000 * 120.00563 * 118.54750 * 13 11 10 15 15 C 1.37885 * 119.99902 * 298.54587 * 13 11 10 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 11 18 18 H 1.48504 * 109.47032 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46816 * 120.00323 * 17 15 13 20 20 H 1.48495 * 109.46630 * 240.00111 * 17 15 13 21 21 C 1.47023 * 125.64818 * 270.01745 * 8 5 4 22 22 H 1.08998 * 109.46792 * 299.99830 * 1 2 3 23 23 H 1.08992 * 109.47090 * 60.00190 * 1 2 3 24 24 H 1.08999 * 109.47035 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46900 * 239.99639 * 2 1 3 26 26 H 1.09003 * 109.47471 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47152 * 299.99838 * 3 2 1 28 28 H 1.09003 * 109.47353 * 59.99683 * 3 2 1 29 29 H 0.97004 * 120.00251 * 274.99579 * 4 2 1 30 30 H 1.09002 * 110.36603 * 37.06148 * 9 8 5 31 31 H 1.09001 * 110.36019 * 274.74745 * 9 8 5 32 32 H 1.09001 * 111.00578 * 278.93648 * 10 9 8 33 33 H 1.08994 * 111.03711 * 155.09778 * 10 9 8 34 34 H 0.96692 * 114.00120 * 63.84675 * 12 11 10 35 35 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.87955 * 61.61246 * 21 8 5 37 37 H 1.09000 * 109.88385 * 300.43739 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4122 -2.2973 1.1219 6 8 1.3247 -2.9477 0.4789 7 8 2.8776 -2.6566 2.4155 8 7 3.7097 -2.4374 0.1026 9 6 5.1273 -2.3701 0.5018 10 6 5.8879 -3.1438 -0.6037 11 6 5.0886 -2.7421 -1.8714 12 8 5.5329 -1.4787 -2.3698 13 6 5.2059 -3.8036 -2.9345 14 1 4.3226 -4.3164 -3.2855 15 6 6.4411 -4.1204 -3.4591 16 7 7.5168 -3.4964 -3.0313 17 14 6.5874 -5.4418 -4.7714 18 1 5.2412 -5.9918 -5.0723 19 1 7.1679 -4.8524 -6.0046 20 1 7.4694 -6.5310 -4.2807 21 6 3.6388 -2.6487 -1.3507 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 2.1110 -0.2067 2.0318 30 1 5.2721 -2.8506 1.4694 31 1 5.4622 -1.3334 0.5383 32 1 5.8363 -4.2193 -0.4339 33 1 6.9234 -2.8106 -0.6728 34 1 6.4512 -1.4762 -2.6727 35 1 8.3857 -3.7191 -3.4006 36 1 3.1287 -1.8091 -1.8228 37 1 3.1075 -3.5760 -1.5650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592077421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:09 Heat of formation + Delta-G solvation = -134.193875 kcal Electronic energy + Delta-G solvation = -21329.633628 eV Core-core repulsion = 18040.381150 eV Total energy + Delta-G solvation = -3289.252479 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.06377 -37.12576 -36.53766 -35.52925 -34.29909 -32.20549 -30.46680 -29.12964 -28.29543 -27.18220 -24.83715 -21.62636 -21.47509 -19.78967 -19.26044 -17.78077 -17.15115 -16.84190 -16.08200 -15.06447 -14.94172 -14.44688 -14.27658 -14.16643 -13.45679 -13.25235 -13.02527 -12.76580 -12.26614 -12.13701 -12.09348 -11.83368 -11.77281 -11.64549 -11.50374 -11.41359 -11.34155 -11.05799 -10.89758 -10.85020 -10.46364 -10.40142 -10.10875 -9.58909 -9.29139 -8.67673 -8.43166 -8.19327 -6.28513 -4.36081 0.90140 3.19112 3.20042 3.28340 3.33309 3.86053 4.26270 4.63037 4.78049 4.98807 5.06810 5.13766 5.33833 5.49652 5.56907 5.76936 5.78697 5.82983 5.99476 6.01786 6.05480 6.21724 6.23057 6.28399 6.36746 6.65344 6.82510 6.92423 6.99649 7.17036 7.37661 7.40748 7.74095 8.02865 8.66858 9.30563 9.39051 10.78750 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025975 B = 0.005670 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.713587 B = 4937.187071 C = 5138.743912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.146 3.854 3 C -0.156 4.156 4 N -1.126 6.126 5 S 2.801 3.199 6 O -0.979 6.979 7 O -0.987 6.987 8 N -1.014 6.014 9 C 0.116 3.884 10 C -0.130 4.130 11 C 0.250 3.750 12 O -0.586 6.586 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.902 3.098 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.137 3.863 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.411 0.589 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.382 0.618 35 H 0.267 0.733 36 H 0.055 0.945 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 7.833 5.883 12.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.039 3.961 3 C -0.215 4.215 4 N -0.885 5.885 5 S 2.809 3.191 6 O -0.962 6.962 7 O -0.971 6.971 8 N -0.856 5.856 9 C -0.008 4.008 10 C -0.169 4.169 11 C 0.209 3.791 12 O -0.395 6.395 13 C -0.574 4.574 14 H 0.083 0.917 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.729 3.271 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.012 3.988 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.243 0.757 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.233 0.767 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.089 7.205 6.358 12.561 hybrid contribution 1.030 -0.305 -0.648 1.254 sum -7.060 6.900 5.710 11.404 Atomic orbital electron populations 1.22331 0.95320 1.03347 1.01999 1.20734 0.94165 0.94335 0.86883 1.22063 1.02163 0.94969 1.02254 1.56228 1.82108 1.31830 1.18381 1.01280 0.72542 0.72954 0.72288 1.93586 1.52402 1.73185 1.77035 1.93575 1.81959 1.82133 1.39482 1.58775 1.19595 1.87186 1.20048 1.22141 0.79485 1.00209 0.99011 1.23259 0.99982 0.99189 0.94513 1.19453 0.86854 0.82542 0.90269 1.86084 1.34634 1.34352 1.84472 1.21604 0.93884 1.20193 1.21728 0.91667 1.24998 0.95512 0.96176 0.96408 1.69708 0.98734 1.42287 1.42788 0.86377 0.78330 0.81217 0.81134 1.19579 1.20830 1.20856 1.21862 0.99980 1.00091 0.76866 0.92442 0.91610 0.91199 0.89517 0.91625 0.91338 0.92381 0.75664 0.91720 0.92529 0.91543 0.89583 0.76731 0.92296 0.92695 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.52 37.16 0.35 -1.55 16 2 C 0.15 1.80 3.41 -67.93 -0.23 1.57 16 3 C -0.16 -1.58 9.44 37.15 0.35 -1.22 16 4 N -1.13 -14.75 5.53 -4.89 -0.03 -14.78 16 5 S 2.80 48.04 6.30 -107.50 -0.68 47.36 16 6 O -0.98 -19.05 16.98 -57.17 -0.97 -20.02 16 7 O -0.99 -18.88 17.46 -57.17 -1.00 -19.88 16 8 N -1.01 -19.00 3.76 -111.42 -0.42 -19.42 16 9 C 0.12 2.19 7.10 -2.53 -0.02 2.17 16 10 C -0.13 -2.83 5.47 -24.58 -0.13 -2.96 16 11 C 0.25 5.85 0.85 -89.94 -0.08 5.77 16 12 O -0.59 -13.97 13.09 -35.23 -0.46 -14.43 16 13 C -0.54 -13.73 8.21 -34.44 -0.28 -14.01 16 14 H 0.07 1.68 7.57 -52.49 -0.40 1.28 16 15 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 16 N -0.90 -22.71 10.65 55.43 0.59 -22.12 16 17 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 C 0.14 2.85 6.29 -3.06 -0.02 2.83 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.91 7.64 -51.93 -0.40 0.51 16 25 H 0.09 1.20 6.51 -51.93 -0.34 0.86 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.41 4.39 8.84 -34.47 -0.30 4.09 16 30 H 0.06 1.14 7.78 -51.93 -0.40 0.74 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 33 H 0.09 1.94 7.54 -51.93 -0.39 1.55 16 34 H 0.38 9.27 7.42 45.56 0.34 9.61 16 35 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.05 1.08 6.66 -51.93 -0.35 0.74 16 37 H 0.07 1.59 7.66 -51.93 -0.40 1.19 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -29.19 312.99 -8.15 -37.34 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -4.73 Total: 11.89 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.15 Total: -5.69 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.15 Total: -56.32 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -2.43 Total: -54.34 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 48.04 SS G_CDS: -0.68 Total: 47.36 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.19 -8.15 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592077421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.857 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds