Wall clock time and date at job start Tue Mar 31 2020 01:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46496 * 120.00054 * 275.00409 * 3 2 1 5 5 S 1.65609 * 119.99795 * 94.99975 * 3 2 1 6 6 O 1.42095 * 106.39804 * 203.54348 * 5 3 2 7 7 O 1.42097 * 106.39906 * 336.46033 * 5 3 2 8 8 N 1.65597 * 107.21866 * 90.00244 * 5 3 2 9 9 C 1.47422 * 125.64781 * 90.02037 * 8 5 3 10 10 C 1.54912 * 104.83325 * 204.09384 * 9 8 5 11 11 C 1.55151 * 101.58068 * 322.99092 * 10 9 8 12 12 O 1.42901 * 110.72547 * 276.96484 * 11 10 9 13 13 C 1.50701 * 110.71989 * 153.86527 * 11 10 9 14 14 H 1.08006 * 119.99905 * 241.45834 * 13 11 10 15 15 C 1.37872 * 120.00170 * 61.45486 * 13 11 10 16 16 N 1.31523 * 119.99799 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00408 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46710 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47472 * 120.00101 * 17 15 13 20 20 H 1.48502 * 109.47008 * 240.00066 * 17 15 13 21 21 C 1.47016 * 125.64782 * 269.71870 * 8 5 3 22 22 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 27 27 H 1.08998 * 109.47387 * 89.99718 * 4 3 2 28 28 H 1.09004 * 109.46919 * 210.00098 * 4 3 2 29 29 H 1.09000 * 109.47054 * 329.99591 * 4 3 2 30 30 H 1.09003 * 110.37140 * 322.93379 * 9 8 5 31 31 H 1.09004 * 110.36628 * 85.25390 * 9 8 5 32 32 H 1.08995 * 111.00498 * 81.07044 * 10 9 8 33 33 H 1.09006 * 111.00209 * 204.88190 * 10 9 8 34 34 H 0.96708 * 113.99073 * 298.54753 * 12 11 10 35 35 H 0.97002 * 119.99658 * 179.97438 * 16 15 13 36 36 H 1.09006 * 109.88236 * 298.38972 * 21 8 5 37 37 H 1.09003 * 109.88795 * 59.55725 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 16 2.4123 2.1201 1.4288 6 8 2.3058 3.5185 1.1999 7 8 1.6869 1.4414 2.4448 8 7 4.0145 1.8136 1.7138 9 6 5.1424 2.6503 1.2654 10 6 6.3544 1.6871 1.2129 11 6 6.0863 0.7816 2.4439 12 8 6.5586 1.4027 3.6410 13 6 6.7244 -0.5712 2.2599 14 1 6.1106 -1.4597 2.2403 15 6 8.0917 -0.6747 2.1165 16 7 8.8391 0.4073 2.1397 17 14 8.8827 -2.3514 1.8876 18 1 7.8313 -3.4000 1.8968 19 1 9.6050 -2.3852 0.5906 20 1 9.8407 -2.6020 2.9943 21 6 4.5473 0.6652 2.4613 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.2278 2.6304 -1.4877 28 1 2.9691 2.8321 -1.1788 29 1 2.3821 1.4047 -2.0654 30 1 4.9406 3.0605 0.2758 31 1 5.3264 3.4532 1.9794 32 1 6.3512 1.1049 0.2914 33 1 7.2918 2.2321 1.3249 34 1 7.5113 1.5688 3.6484 35 1 9.8012 0.3344 2.0392 36 1 4.1834 0.6903 3.4885 37 1 4.2423 -0.2641 1.9803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592078330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:38 Heat of formation + Delta-G solvation = -122.706935 kcal Electronic energy + Delta-G solvation = -21395.229637 eV Core-core repulsion = 18106.475269 eV Total energy + Delta-G solvation = -3288.754368 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.05779 -37.01432 -36.60077 -35.53301 -34.28850 -32.21823 -30.74097 -29.12695 -28.30643 -26.14089 -24.84623 -22.68300 -21.55057 -19.80511 -18.68448 -17.55864 -17.42974 -16.79630 -16.10030 -14.99887 -14.85634 -14.58985 -14.25574 -14.05573 -13.83110 -13.28420 -12.96570 -12.74452 -12.55508 -12.17855 -12.10649 -12.01471 -11.82921 -11.81251 -11.64869 -11.36295 -11.31467 -11.11862 -10.93463 -10.84151 -10.48043 -10.43295 -10.12763 -9.37127 -9.10081 -8.68482 -8.41887 -8.18839 -6.29798 -4.37675 0.83724 3.14175 3.16541 3.26006 3.29724 3.79672 4.23852 4.52932 4.73341 4.98353 5.11830 5.20526 5.37713 5.42424 5.51462 5.65542 5.68609 5.72731 5.81607 5.93947 6.01606 6.11282 6.17907 6.22201 6.43935 6.51166 6.69680 6.80965 6.95302 7.06125 7.33264 7.38069 7.72066 8.02513 8.64666 9.30213 9.40507 10.77654 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024873 B = 0.005969 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.453738 B = 4689.964165 C = 5116.252185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.121 3.879 3 N -1.013 6.013 4 C 0.098 3.902 5 S 2.798 3.202 6 O -0.982 6.982 7 O -0.976 6.976 8 N -1.015 6.015 9 C 0.121 3.879 10 C -0.131 4.131 11 C 0.249 3.751 12 O -0.585 6.585 13 C -0.534 4.534 14 H 0.064 0.936 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.902 3.098 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.137 3.863 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.382 0.618 35 H 0.267 0.733 36 H 0.063 0.937 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 0.887 -7.318 12.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.004 4.004 3 N -0.852 5.852 4 C -0.048 4.048 5 S 2.808 3.192 6 O -0.966 6.966 7 O -0.960 6.960 8 N -0.857 5.857 9 C -0.004 4.004 10 C -0.170 4.170 11 C 0.208 3.792 12 O -0.394 6.394 13 C -0.573 4.573 14 H 0.082 0.918 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.013 3.987 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.232 0.768 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.680 1.436 -6.656 12.666 hybrid contribution 1.388 -1.073 -0.691 1.885 sum -9.292 0.363 -7.347 11.851 Atomic orbital electron populations 1.22213 0.96125 1.02302 1.02446 1.21231 0.94392 0.81408 1.03397 1.58069 1.80060 1.23847 1.23257 1.21397 1.01485 0.96247 0.85631 1.01456 0.72076 0.72979 0.72732 1.93567 1.86325 1.30693 1.86019 1.93575 1.70622 1.76029 1.55824 1.58874 1.22783 1.36214 1.67782 1.22103 0.86943 0.93888 0.97431 1.23282 0.95686 0.97156 1.00906 1.19477 0.87025 0.90752 0.81932 1.86138 1.29290 1.82996 1.40969 1.21569 0.92445 0.92706 1.50571 0.91766 1.24996 0.97166 0.97242 0.93688 1.69717 1.05892 1.27788 1.50015 0.86381 0.79265 0.83650 0.77752 1.19641 1.20909 1.20781 1.21801 0.96280 0.85857 0.94780 0.92509 0.91974 0.91511 0.89999 0.90476 0.92825 0.91275 0.91147 0.92713 0.92015 0.91640 0.89620 0.76831 0.92283 0.91849 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 10.24 37.16 0.38 -1.47 16 2 C 0.12 1.47 6.08 -4.04 -0.02 1.45 16 3 N -1.01 -14.11 3.24 -121.76 -0.39 -14.50 16 4 C 0.10 1.11 10.33 59.84 0.62 1.73 16 5 S 2.80 49.75 6.26 -107.50 -0.67 49.08 16 6 O -0.98 -19.14 16.80 -57.17 -0.96 -20.10 16 7 O -0.98 -19.37 16.69 -57.17 -0.95 -20.33 16 8 N -1.01 -19.49 3.75 -111.41 -0.42 -19.91 16 9 C 0.12 2.30 6.97 -2.53 -0.02 2.28 16 10 C -0.13 -2.80 5.47 -24.58 -0.13 -2.93 16 11 C 0.25 5.91 0.85 -89.93 -0.08 5.83 16 12 O -0.59 -14.66 13.07 -35.23 -0.46 -15.12 16 13 C -0.53 -13.56 8.22 -34.44 -0.28 -13.84 16 14 H 0.06 1.61 7.58 -52.48 -0.40 1.22 16 15 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 16 N -0.89 -22.65 10.67 55.43 0.59 -22.06 16 17 Si 0.90 19.78 29.54 -169.99 -5.02 14.75 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 21 C 0.14 2.93 6.35 -3.06 -0.02 2.91 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 1.07 7.61 -51.93 -0.40 0.67 16 26 H 0.08 0.77 7.96 -51.93 -0.41 0.36 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.80 7.79 -51.93 -0.40 0.39 16 29 H 0.07 0.64 7.94 -51.93 -0.41 0.22 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.40 8.04 -51.93 -0.42 0.99 16 33 H 0.09 1.92 7.54 -51.93 -0.39 1.53 16 34 H 0.38 9.54 7.46 45.56 0.34 9.88 16 35 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 36 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 37 H 0.07 1.30 7.66 -51.93 -0.40 0.91 16 LS Contribution 315.94 15.07 4.76 4.76 Total: -1.00 -29.45 315.94 -8.16 -37.61 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -4.98 Total: 8.15 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 0.35 Total: -2.33 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.22 Total: -56.47 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -2.37 Total: -55.55 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 49.75 SS G_CDS: -0.67 Total: 49.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.45 -8.16 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.097 kcal (2) G-P(sol) polarization free energy of solvation -29.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds