Wall clock time and date at job start Tue Mar 31 2020 01:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46496 * 120.00054 * 275.00409 * 3 2 1 5 5 S 1.65609 * 119.99795 * 94.99975 * 3 2 1 6 6 O 1.42095 * 106.39804 * 203.54348 * 5 3 2 7 7 O 1.42097 * 106.39906 * 336.46033 * 5 3 2 8 8 N 1.65597 * 107.21866 * 90.00244 * 5 3 2 9 9 C 1.47422 * 125.64781 * 90.02037 * 8 5 3 10 10 C 1.54912 * 104.83325 * 204.09384 * 9 8 5 11 11 C 1.55151 * 101.58068 * 322.99092 * 10 9 8 12 12 O 1.42901 * 110.72547 * 276.96484 * 11 10 9 13 13 C 1.50701 * 110.71989 * 153.86527 * 11 10 9 14 14 H 1.08006 * 119.99905 * 241.45834 * 13 11 10 15 15 C 1.37872 * 120.00170 * 61.45486 * 13 11 10 16 16 N 1.31523 * 119.99799 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00408 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46710 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47472 * 120.00101 * 17 15 13 20 20 H 1.48502 * 109.47008 * 240.00066 * 17 15 13 21 21 C 1.47016 * 125.64782 * 269.71870 * 8 5 3 22 22 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 27 27 H 1.08998 * 109.47387 * 89.99718 * 4 3 2 28 28 H 1.09004 * 109.46919 * 210.00098 * 4 3 2 29 29 H 1.09000 * 109.47054 * 329.99591 * 4 3 2 30 30 H 1.09003 * 110.37140 * 322.93379 * 9 8 5 31 31 H 1.09004 * 110.36628 * 85.25390 * 9 8 5 32 32 H 1.08995 * 111.00498 * 81.07044 * 10 9 8 33 33 H 1.09006 * 111.00209 * 204.88190 * 10 9 8 34 34 H 0.96708 * 113.99073 * 298.54753 * 12 11 10 35 35 H 0.97002 * 119.99658 * 179.97438 * 16 15 13 36 36 H 1.09006 * 109.88236 * 298.38972 * 21 8 5 37 37 H 1.09003 * 109.88795 * 59.55725 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 16 2.4123 2.1201 1.4288 6 8 2.3058 3.5185 1.1999 7 8 1.6869 1.4414 2.4448 8 7 4.0145 1.8136 1.7138 9 6 5.1424 2.6503 1.2654 10 6 6.3544 1.6871 1.2129 11 6 6.0863 0.7816 2.4439 12 8 6.5586 1.4027 3.6410 13 6 6.7244 -0.5712 2.2599 14 1 6.1106 -1.4597 2.2403 15 6 8.0917 -0.6747 2.1165 16 7 8.8391 0.4073 2.1397 17 14 8.8827 -2.3514 1.8876 18 1 7.8313 -3.4000 1.8968 19 1 9.6050 -2.3852 0.5906 20 1 9.8407 -2.6020 2.9943 21 6 4.5473 0.6652 2.4613 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.2278 2.6304 -1.4877 28 1 2.9691 2.8321 -1.1788 29 1 2.3821 1.4047 -2.0654 30 1 4.9406 3.0605 0.2758 31 1 5.3264 3.4532 1.9794 32 1 6.3512 1.1049 0.2914 33 1 7.2918 2.2321 1.3249 34 1 7.5113 1.5688 3.6484 35 1 9.8012 0.3344 2.0392 36 1 4.1834 0.6903 3.4885 37 1 4.2423 -0.2641 1.9803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592078330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:38 Heat of formation + Delta-G solvation = -145.715512 kcal Electronic energy + Delta-G solvation = -21396.227363 eV Core-core repulsion = 18106.475269 eV Total energy + Delta-G solvation = -3289.752095 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.77808 -38.48249 -37.63908 -37.01953 -36.08043 -34.16181 -31.65562 -30.82902 -30.02759 -27.08751 -26.69450 -23.70223 -23.11856 -21.60387 -20.06373 -19.17326 -18.85284 -18.40959 -17.36751 -16.88371 -16.39699 -16.00888 -15.81477 -15.25619 -14.93340 -14.85390 -14.54740 -13.96244 -13.87331 -13.62241 -13.54702 -13.35600 -13.32303 -13.21088 -13.15647 -12.95332 -12.82746 -12.63336 -12.38690 -12.22642 -12.14822 -11.94860 -11.83097 -11.17126 -10.60813 -10.18201 -10.09650 -9.91989 -8.19978 -6.34454 -0.55383 1.43120 1.48035 1.57280 1.83314 2.39869 2.44200 3.03817 3.14953 3.69073 3.80664 4.05132 4.21158 4.24685 4.33412 4.42629 4.56215 4.63340 4.67765 4.70957 4.77092 4.88264 4.93461 4.95032 5.15808 5.20152 5.27561 5.31054 5.35167 5.51814 5.58350 5.70576 5.81539 6.13806 6.70338 7.35749 7.44726 8.86213 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024873 B = 0.005969 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.453738 B = 4689.964165 C = 5116.252185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 N -1.006 6.006 4 C 0.087 3.913 5 S 2.810 3.190 6 O -1.000 7.000 7 O -1.002 7.002 8 N -1.018 6.018 9 C 0.124 3.876 10 C -0.119 4.119 11 C 0.231 3.769 12 O -0.596 6.596 13 C -0.556 4.556 14 H 0.060 0.940 15 C 0.034 3.966 16 N -0.909 5.909 17 Si 0.960 3.040 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.284 1.284 21 C 0.143 3.857 22 H 0.072 0.928 23 H 0.039 0.961 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.378 0.622 35 H 0.269 0.731 36 H 0.047 0.953 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.145 0.176 -9.176 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.013 4.013 3 N -0.848 5.848 4 C -0.057 4.057 5 S 2.820 3.180 6 O -0.984 6.984 7 O -0.986 6.986 8 N -0.858 5.858 9 C -0.001 4.001 10 C -0.159 4.159 11 C 0.190 3.810 12 O -0.405 6.405 13 C -0.594 4.594 14 H 0.078 0.922 15 C -0.167 4.167 16 N -0.549 5.549 17 Si 0.786 3.214 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.210 1.210 21 C 0.018 3.982 22 H 0.091 0.909 23 H 0.058 0.942 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.227 0.773 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.302 0.738 -8.513 14.169 hybrid contribution 1.540 -0.855 -0.140 1.767 sum -9.762 -0.117 -8.654 13.046 Atomic orbital electron populations 1.22211 0.95037 1.03566 1.02093 1.21499 0.95361 0.80303 1.04150 1.57803 1.79448 1.24724 1.22854 1.21700 1.02227 0.96929 0.84878 1.00965 0.71419 0.72491 0.73154 1.93536 1.86350 1.32044 1.86455 1.93537 1.70947 1.76367 1.57717 1.58893 1.23294 1.35568 1.68055 1.22079 0.85937 0.93072 0.99016 1.23062 0.96126 0.97009 0.99687 1.19746 0.88299 0.90707 0.82222 1.86133 1.29002 1.83195 1.42166 1.21801 0.93031 0.93336 1.51247 0.92192 1.25631 0.97530 1.00159 0.93420 1.69794 1.06072 1.29061 1.49945 0.85487 0.78229 0.80131 0.77598 1.19469 1.20333 1.20964 1.21620 0.94883 0.87211 0.94506 0.90934 0.94210 0.89508 0.91419 0.87561 0.91497 0.91616 0.88248 0.89509 0.92688 0.91752 0.91070 0.77278 0.92115 0.93430 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 10.24 71.98 0.74 -2.52 16 2 C 0.11 2.43 6.08 86.38 0.53 2.96 16 3 N -1.01 -25.75 3.24 -539.14 -1.75 -27.50 16 4 C 0.09 1.69 10.33 127.77 1.32 3.01 16 5 S 2.81 97.30 6.26 -56.49 -0.35 96.94 16 6 O -1.00 -37.87 16.80 -128.00 -2.15 -40.02 16 7 O -1.00 -39.62 16.69 -128.00 -2.14 -41.76 16 8 N -1.02 -38.42 3.75 -506.39 -1.90 -40.32 16 9 C 0.12 4.58 6.97 86.86 0.61 5.19 16 10 C -0.12 -5.07 5.47 31.99 0.17 -4.90 16 11 C 0.23 11.01 0.85 -10.35 -0.01 11.00 16 12 O -0.60 -30.48 13.07 -148.98 -1.95 -32.42 16 13 C -0.56 -28.19 8.22 25.60 0.21 -27.98 16 14 H 0.06 3.01 7.58 -2.91 -0.02 2.99 16 15 C 0.03 1.68 5.28 84.65 0.45 2.12 16 16 N -0.91 -45.98 10.67 21.45 0.23 -45.75 16 17 Si 0.96 40.08 29.54 68.60 2.03 42.11 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 19 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 21 C 0.14 6.12 6.35 86.74 0.55 6.67 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 24 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.07 1.67 7.61 -2.39 -0.02 1.66 16 26 H 0.11 1.72 7.96 -2.39 -0.02 1.70 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.33 7.79 -2.38 -0.02 1.31 16 29 H 0.10 1.37 7.94 -2.39 -0.02 1.35 16 30 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 2.71 8.04 -2.39 -0.02 2.69 16 33 H 0.07 3.21 7.54 -2.38 -0.02 3.19 16 34 H 0.38 19.36 7.46 -74.05 -0.55 18.80 16 35 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 36 H 0.05 2.14 8.07 -2.38 -0.02 2.13 16 37 H 0.08 3.06 7.66 -2.39 -0.02 3.04 16 Total: -1.00 -62.19 315.94 -2.91 -65.10 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.51 Total: 28.06 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.56 Total: -4.44 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -3.42 Total: -113.57 kcal Atomic # 8 Polarization: -107.97 SS G_CDS: -6.23 Total: -114.20 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: 97.30 SS G_CDS: -0.35 Total: 96.94 kcal Total: -62.19 -2.91 -65.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.614 kcal (2) G-P(sol) polarization free energy of solvation -62.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds