Wall clock time and date at job start Tue Mar 31 2020 01:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47415 * 2 1 4 4 C 1.50700 * 109.46878 * 240.00233 * 2 1 3 5 5 H 1.08004 * 120.00007 * 240.00611 * 4 2 1 6 6 C 1.37879 * 120.00328 * 59.99959 * 4 2 1 7 7 N 1.31513 * 119.99602 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00109 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47012 * 90.00626 * 8 6 4 10 10 H 1.48496 * 109.46658 * 210.00254 * 8 6 4 11 11 H 1.48494 * 109.47367 * 330.00133 * 8 6 4 12 12 N 1.46500 * 109.47101 * 120.00709 * 2 1 3 13 13 S 1.65605 * 119.99729 * 263.71435 * 12 2 1 14 14 O 1.42107 * 106.39827 * 311.49612 * 13 12 2 15 15 O 1.42102 * 106.40000 * 178.58406 * 13 12 2 16 16 N 1.65594 * 107.22179 * 65.03904 * 13 12 2 17 17 C 1.44461 * 118.51172 * 263.88909 * 16 13 12 18 18 C 1.54869 * 109.32466 * 268.90815 * 17 16 13 19 19 C 1.47693 * 109.67916 * 290.10287 * 18 17 16 20 20 O 1.42558 * 113.66086 * 60.80931 * 19 18 17 21 21 C 1.40520 * 113.53805 * 272.23159 * 20 19 18 22 22 C 1.48184 * 118.51127 * 83.86457 * 16 13 12 23 23 H 1.09000 * 109.47043 * 174.26031 * 1 2 3 24 24 H 1.08994 * 109.46689 * 294.26097 * 1 2 3 25 25 H 1.08994 * 109.46736 * 54.25798 * 1 2 3 26 26 H 0.96998 * 119.99791 * 179.97438 * 7 6 4 27 27 H 0.97002 * 120.00295 * 83.70666 * 12 2 1 28 28 H 1.09004 * 109.49749 * 148.95264 * 17 16 13 29 29 H 1.09003 * 109.49787 * 28.86721 * 17 16 13 30 30 H 1.09011 * 109.43729 * 170.04340 * 18 17 16 31 31 H 1.09000 * 109.40557 * 50.14988 * 18 17 16 32 32 H 1.08994 * 108.64358 * 299.72507 * 19 18 17 33 33 H 1.09000 * 108.64349 * 181.89143 * 19 18 17 34 34 H 1.09007 * 109.41225 * 215.41333 * 21 20 19 35 35 H 1.08999 * 109.40971 * 335.17335 * 21 20 19 36 36 H 1.09001 * 109.23206 * 259.10610 * 22 16 13 37 37 H 1.08992 * 109.23145 * 18.52141 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1614 -4.4125 10 1 2.4872 -0.1401 -5.1120 11 1 3.6307 -1.7565 -3.7121 12 7 2.0184 -0.6908 1.1961 13 16 2.4424 0.1796 2.5397 14 8 3.2879 1.2286 2.0879 15 8 2.8366 -0.7674 3.5231 16 7 1.0659 0.9015 3.1108 17 6 0.7916 2.2661 2.7242 18 6 1.4065 3.2285 3.7701 19 6 0.6537 3.1329 5.0371 20 8 0.6758 1.8317 5.6190 21 6 -0.3507 0.9919 5.1547 22 6 0.1710 0.1182 3.9948 23 1 -0.3633 -1.0225 -0.1028 24 1 -0.3632 0.4222 0.9369 25 1 -0.3632 0.6003 -0.8341 26 1 0.7095 1.1619 -3.4843 27 1 2.0932 -1.6579 1.2011 28 1 -0.2863 2.4211 2.6766 29 1 1.2312 2.4625 1.7462 30 1 1.3574 4.2510 3.3952 31 1 2.4473 2.9561 3.9451 32 1 -0.3827 3.4129 4.8486 33 1 1.0787 3.8404 5.7492 34 1 -0.6891 0.3497 5.9679 35 1 -1.1848 1.5994 4.8036 36 1 -0.6748 -0.2501 3.4142 37 1 0.7217 -0.7288 4.4037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593539263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:15 Heat of formation + Delta-G solvation = -120.298485 kcal Electronic energy + Delta-G solvation = -21575.262363 eV Core-core repulsion = 18286.612434 eV Total energy + Delta-G solvation = -3288.649930 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.36041 -36.72751 -35.55878 -35.29844 -35.13848 -32.91881 -32.16169 -28.36567 -28.24852 -26.12416 -25.25305 -21.95480 -21.57919 -20.94720 -18.85381 -17.48885 -17.31737 -16.91883 -16.17871 -15.89804 -15.37472 -15.14129 -14.59705 -13.93877 -13.78394 -13.53969 -13.42017 -12.71860 -12.61972 -12.29357 -12.15729 -11.86440 -11.68762 -11.46641 -11.33929 -11.19551 -11.05397 -10.99385 -10.72220 -10.67037 -10.54808 -10.36475 -10.10258 -9.64340 -9.22073 -8.78893 -8.61919 -8.28695 -6.14728 -4.20676 1.25166 3.24986 3.31958 3.35467 3.43351 3.86734 4.18933 4.36110 4.78076 4.79656 4.95603 5.06660 5.08969 5.18635 5.34200 5.39948 5.46958 5.54415 5.72938 5.73689 5.83915 5.92427 6.24146 6.31510 6.39915 6.76050 6.79548 6.93463 6.98369 7.28356 7.56502 7.64166 7.87424 7.99743 8.26085 8.81969 9.45231 10.91951 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031210 B = 0.005655 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.944984 B = 4950.192683 C = 5159.116796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.270 3.730 3 H 0.048 0.952 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -1.112 6.112 13 S 2.780 3.220 14 O -0.980 6.980 15 O -1.001 7.001 16 N -0.995 5.995 17 C 0.125 3.875 18 C -0.176 4.176 19 C 0.065 3.935 20 O -0.368 6.368 21 C 0.056 3.944 22 C 0.088 3.912 23 H 0.033 0.967 24 H 0.014 0.986 25 H 0.088 0.912 26 H 0.264 0.736 27 H 0.405 0.595 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 2.989 12.183 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.166 3.834 3 H 0.065 0.935 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.874 5.874 13 S 2.788 3.212 14 O -0.964 6.964 15 O -0.985 6.985 16 N -0.833 5.833 17 C -0.002 4.002 18 C -0.216 4.216 19 C -0.012 4.012 20 O -0.285 6.285 21 C -0.023 4.023 22 C -0.037 4.037 23 H 0.053 0.947 24 H 0.033 0.967 25 H 0.107 0.893 26 H 0.073 0.927 27 H 0.238 0.762 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.802 3.372 12.558 13.861 hybrid contribution -0.343 -0.791 -1.367 1.617 sum -5.145 2.581 11.191 12.584 Atomic orbital electron populations 1.22254 0.98578 1.00705 0.99740 1.18541 0.90695 0.92848 0.81336 0.93477 1.21254 1.31812 1.13080 0.89970 0.91872 1.24911 0.94889 0.95011 0.99084 1.69865 1.36451 1.22604 1.23880 0.86444 0.79281 0.79255 0.82125 1.20627 1.21091 1.19808 1.55922 1.83578 1.18854 1.29077 1.01918 0.73356 0.73177 0.72718 1.93583 1.63388 1.57530 1.81866 1.93527 1.81710 1.63213 1.60022 1.57535 1.43180 1.21288 1.61343 1.21185 1.01025 0.79989 0.97987 1.22093 1.02090 1.00937 0.96460 1.21536 0.99695 0.84551 0.95379 1.87471 1.52619 1.24021 1.64414 1.22790 0.89753 0.93541 0.96192 1.22471 0.94972 0.94825 0.91474 0.94735 0.96663 0.89343 0.92651 0.76217 0.90780 0.89010 0.89463 0.90449 0.93333 0.90104 0.89060 0.92644 0.91043 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.21 37.16 0.34 -3.00 16 2 C 0.27 6.42 2.92 -69.08 -0.20 6.22 16 3 H 0.05 1.23 7.33 -51.93 -0.38 0.85 16 4 C -0.52 -13.78 8.76 -34.44 -0.30 -14.09 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.11 11.39 55.43 0.63 -23.48 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -1.11 -22.85 5.51 -5.88 -0.03 -22.88 16 13 S 2.78 54.67 6.00 -107.50 -0.65 54.03 16 14 O -0.98 -22.23 15.96 -57.17 -0.91 -23.14 16 15 O -1.00 -20.99 16.68 -57.17 -0.95 -21.94 16 16 N -0.99 -15.79 2.47 -112.74 -0.28 -16.07 16 17 C 0.12 1.82 4.93 -4.14 -0.02 1.80 16 18 C -0.18 -2.27 6.03 -28.31 -0.17 -2.44 16 19 C 0.06 0.73 6.04 34.59 0.21 0.94 16 20 O -0.37 -4.92 10.23 -34.08 -0.35 -5.27 16 21 C 0.06 0.62 6.49 37.83 0.25 0.86 16 22 C 0.09 1.15 6.70 -2.44 -0.02 1.13 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.01 0.27 7.34 -51.93 -0.38 -0.11 16 25 H 0.09 2.13 6.25 -51.93 -0.32 1.81 16 26 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.41 7.72 8.84 -34.48 -0.30 7.41 16 28 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 29 H 0.09 1.52 7.25 -51.93 -0.38 1.15 16 30 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.08 1.18 7.94 -51.93 -0.41 0.76 16 32 H 0.05 0.45 7.28 -51.93 -0.38 0.07 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.51 7.21 -51.93 -0.37 0.13 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.30 6.82 -51.93 -0.35 0.94 16 LS Contribution 306.66 15.07 4.62 4.62 Total: -1.00 -31.89 306.66 -8.31 -40.20 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.36 Total: 5.22 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -0.01 Total: -6.98 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: 0.32 Total: -62.43 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -2.21 Total: -50.35 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 54.67 SS G_CDS: -0.65 Total: 54.03 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.89 -8.31 -40.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593539263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.099 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds