Wall clock time and date at job start Tue Mar 31 2020 01:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47415 * 2 1 4 4 C 1.50700 * 109.46878 * 240.00233 * 2 1 3 5 5 H 1.08004 * 120.00007 * 240.00611 * 4 2 1 6 6 C 1.37879 * 120.00328 * 59.99959 * 4 2 1 7 7 N 1.31513 * 119.99602 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00109 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47012 * 90.00626 * 8 6 4 10 10 H 1.48496 * 109.46658 * 210.00254 * 8 6 4 11 11 H 1.48494 * 109.47367 * 330.00133 * 8 6 4 12 12 N 1.46500 * 109.47101 * 120.00709 * 2 1 3 13 13 S 1.65605 * 119.99729 * 263.71435 * 12 2 1 14 14 O 1.42107 * 106.39827 * 311.49612 * 13 12 2 15 15 O 1.42102 * 106.40000 * 178.58406 * 13 12 2 16 16 N 1.65594 * 107.22179 * 65.03904 * 13 12 2 17 17 C 1.44461 * 118.51172 * 263.88909 * 16 13 12 18 18 C 1.54869 * 109.32466 * 268.90815 * 17 16 13 19 19 C 1.47693 * 109.67916 * 290.10287 * 18 17 16 20 20 O 1.42558 * 113.66086 * 60.80931 * 19 18 17 21 21 C 1.40520 * 113.53805 * 272.23159 * 20 19 18 22 22 C 1.48184 * 118.51127 * 83.86457 * 16 13 12 23 23 H 1.09000 * 109.47043 * 174.26031 * 1 2 3 24 24 H 1.08994 * 109.46689 * 294.26097 * 1 2 3 25 25 H 1.08994 * 109.46736 * 54.25798 * 1 2 3 26 26 H 0.96998 * 119.99791 * 179.97438 * 7 6 4 27 27 H 0.97002 * 120.00295 * 83.70666 * 12 2 1 28 28 H 1.09004 * 109.49749 * 148.95264 * 17 16 13 29 29 H 1.09003 * 109.49787 * 28.86721 * 17 16 13 30 30 H 1.09011 * 109.43729 * 170.04340 * 18 17 16 31 31 H 1.09000 * 109.40557 * 50.14988 * 18 17 16 32 32 H 1.08994 * 108.64358 * 299.72507 * 19 18 17 33 33 H 1.09000 * 108.64349 * 181.89143 * 19 18 17 34 34 H 1.09007 * 109.41225 * 215.41333 * 21 20 19 35 35 H 1.08999 * 109.40971 * 335.17335 * 21 20 19 36 36 H 1.09001 * 109.23206 * 259.10610 * 22 16 13 37 37 H 1.08992 * 109.23145 * 18.52141 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1614 -4.4125 10 1 2.4872 -0.1401 -5.1120 11 1 3.6307 -1.7565 -3.7121 12 7 2.0184 -0.6908 1.1961 13 16 2.4424 0.1796 2.5397 14 8 3.2879 1.2286 2.0879 15 8 2.8366 -0.7674 3.5231 16 7 1.0659 0.9015 3.1108 17 6 0.7916 2.2661 2.7242 18 6 1.4065 3.2285 3.7701 19 6 0.6537 3.1329 5.0371 20 8 0.6758 1.8317 5.6190 21 6 -0.3507 0.9919 5.1547 22 6 0.1710 0.1182 3.9948 23 1 -0.3633 -1.0225 -0.1028 24 1 -0.3632 0.4222 0.9369 25 1 -0.3632 0.6003 -0.8341 26 1 0.7095 1.1619 -3.4843 27 1 2.0932 -1.6579 1.2011 28 1 -0.2863 2.4211 2.6766 29 1 1.2312 2.4625 1.7462 30 1 1.3574 4.2510 3.3952 31 1 2.4473 2.9561 3.9451 32 1 -0.3827 3.4129 4.8486 33 1 1.0787 3.8404 5.7492 34 1 -0.6891 0.3497 5.9679 35 1 -1.1848 1.5994 4.8036 36 1 -0.6748 -0.2501 3.4142 37 1 0.7217 -0.7288 4.4037 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593539263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:15 Heat of formation + Delta-G solvation = -145.124409 kcal Electronic energy + Delta-G solvation = -21576.338896 eV Core-core repulsion = 18286.612434 eV Total energy + Delta-G solvation = -3289.726462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32268 -38.38869 -37.26777 -36.90571 -36.46653 -34.12212 -33.88596 -30.10895 -29.32262 -27.23163 -27.14761 -22.92846 -22.80906 -22.65634 -20.38607 -19.07979 -18.82520 -18.06117 -17.79207 -17.06516 -16.92639 -16.45076 -16.11112 -15.44826 -14.94727 -14.80843 -14.63634 -14.33820 -14.01728 -13.72936 -13.63065 -13.42327 -13.25676 -13.15788 -13.00271 -12.81297 -12.61846 -12.45357 -12.22799 -12.08255 -12.01216 -11.73530 -11.53832 -11.12220 -10.61265 -10.59158 -10.11376 -9.91328 -8.15861 -6.28651 -0.30234 1.43094 1.45046 1.54515 2.01140 2.42226 2.61926 3.05366 3.14138 3.43969 3.73830 3.88259 3.99698 4.21713 4.37442 4.45047 4.52878 4.56007 4.66497 4.76660 4.79471 4.90456 4.91256 4.98603 5.05602 5.15771 5.20756 5.26838 5.59062 5.73486 5.80958 6.03030 6.15708 6.40910 6.45544 6.80921 7.40398 8.89562 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031210 B = 0.005655 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.944984 B = 4950.192683 C = 5159.116796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.275 3.725 3 H 0.018 0.982 4 C -0.547 4.547 5 H 0.059 0.941 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.275 1.275 12 N -1.113 6.113 13 S 2.792 3.208 14 O -1.017 7.017 15 O -1.015 7.015 16 N -0.988 5.988 17 C 0.117 3.883 18 C -0.174 4.174 19 C 0.060 3.940 20 O -0.393 6.393 21 C 0.055 3.945 22 C 0.077 3.923 23 H 0.034 0.966 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.266 0.734 27 H 0.411 0.589 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.389 3.055 12.917 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.170 3.830 3 H 0.036 0.964 4 C -0.586 4.586 5 H 0.077 0.923 6 C -0.181 4.181 7 N -0.549 5.549 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.200 1.200 12 N -0.874 5.874 13 S 2.801 3.199 14 O -1.000 7.000 15 O -0.999 6.999 16 N -0.830 5.830 17 C -0.009 4.009 18 C -0.213 4.213 19 C -0.016 4.016 20 O -0.311 6.311 21 C -0.023 4.023 22 C -0.047 4.047 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.245 0.755 28 H 0.124 0.876 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.492 3.419 13.300 15.190 hybrid contribution 0.180 -0.785 -1.538 1.736 sum -6.313 2.634 11.762 13.606 Atomic orbital electron populations 1.22034 0.96852 1.00478 1.00432 1.18285 0.91888 0.91244 0.81588 0.96429 1.21616 1.32195 1.13343 0.91475 0.92324 1.25634 0.95091 0.95708 1.01664 1.69970 1.36981 1.23418 1.24518 0.85531 0.78730 0.78366 0.78836 1.19609 1.20798 1.19950 1.55774 1.83713 1.19166 1.28739 1.01349 0.73876 0.72459 0.72230 1.93528 1.65534 1.58517 1.82443 1.93500 1.82502 1.63847 1.60083 1.57263 1.42532 1.21820 1.61380 1.21379 1.02850 0.79427 0.97265 1.22116 1.00350 1.01629 0.97247 1.21668 1.01171 0.84197 0.94530 1.87457 1.53768 1.25073 1.64822 1.22980 0.89701 0.93690 0.95973 1.22826 0.94827 0.94826 0.92219 0.94648 0.93510 0.91615 0.92499 0.75545 0.87552 0.91790 0.87207 0.93639 0.90407 0.88731 0.86790 0.90080 0.88860 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 9.21 71.98 0.66 -5.28 16 2 C 0.28 13.24 2.92 44.25 0.13 13.37 16 3 H 0.02 0.96 7.33 -2.39 -0.02 0.95 16 4 C -0.55 -29.20 8.76 25.60 0.22 -28.98 16 5 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -49.59 11.39 21.45 0.24 -49.35 16 8 Si 0.96 42.38 29.54 68.60 2.03 44.40 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 N -1.11 -46.10 5.51 -172.52 -0.95 -47.05 16 13 S 2.79 111.07 6.00 -56.49 -0.34 110.73 16 14 O -1.02 -47.72 15.96 -128.00 -2.04 -49.76 16 15 O -1.02 -42.82 16.68 -128.00 -2.13 -44.96 16 16 N -0.99 -30.26 2.47 -510.60 -1.26 -31.53 16 17 C 0.12 3.24 4.93 87.40 0.43 3.67 16 18 C -0.17 -4.25 6.03 29.57 0.18 -4.07 16 19 C 0.06 1.18 6.04 70.32 0.42 1.61 16 20 O -0.39 -9.51 10.23 -144.88 -1.48 -10.99 16 21 C 0.06 1.01 6.49 72.42 0.47 1.48 16 22 C 0.08 1.84 6.70 86.49 0.58 2.41 16 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 1.65 7.34 -2.39 -0.02 1.63 16 25 H 0.07 3.15 6.25 -2.39 -0.01 3.14 16 26 H 0.27 13.74 8.31 -92.71 -0.77 12.96 16 27 H 0.41 15.76 8.84 -96.74 -0.86 14.90 16 28 H 0.11 2.25 8.10 -2.39 -0.02 2.23 16 29 H 0.06 2.15 7.25 -2.39 -0.02 2.13 16 30 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.04 1.39 7.94 -2.39 -0.02 1.37 16 32 H 0.08 1.08 7.28 -2.39 -0.02 1.06 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.08 1.08 7.21 -2.39 -0.02 1.07 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 2.16 6.82 -2.39 -0.02 2.14 16 Total: -1.00 -69.19 306.66 -2.17 -71.37 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.22 Total: 21.43 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 3.55 Total: -14.29 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -1.97 Total: -127.93 kcal Atomic # 8 Polarization: -100.05 SS G_CDS: -5.66 Total: -105.71 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 111.07 SS G_CDS: -0.34 Total: 110.73 kcal Total: -69.19 -2.17 -71.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593539263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.758 kcal (2) G-P(sol) polarization free energy of solvation -69.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds