Wall clock time and date at job start Tue Mar 31 2020 01:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46880 * 2 1 4 4 C 1.50699 * 109.47061 * 119.99245 * 2 1 3 5 5 H 1.08006 * 119.99770 * 120.00594 * 4 2 1 6 6 C 1.37877 * 120.00459 * 300.00483 * 4 2 1 7 7 N 1.31516 * 119.99956 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00225 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46820 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46927 * 119.99979 * 8 6 4 11 11 H 1.48502 * 109.46910 * 240.00019 * 8 6 4 12 12 N 1.46497 * 109.47728 * 239.99639 * 2 1 3 13 13 S 1.65598 * 120.00175 * 94.99474 * 12 2 1 14 14 O 1.42102 * 106.40051 * 311.46758 * 13 12 2 15 15 O 1.42094 * 106.40487 * 178.54444 * 13 12 2 16 16 N 1.65603 * 107.21432 * 65.00524 * 13 12 2 17 17 C 1.43430 * 120.63428 * 269.71728 * 16 13 12 18 18 C 1.55327 * 116.24042 * 269.63292 * 17 16 13 19 19 C 1.55186 * 108.87140 * 319.46387 * 18 17 16 20 20 O 1.39642 * 110.57207 * 322.14736 * 19 18 17 21 21 C 1.42378 * 108.63572 * 101.17390 * 20 19 18 22 22 C 1.46918 * 113.78521 * 267.44976 * 21 20 19 23 23 H 1.08995 * 109.47048 * 60.00856 * 1 2 3 24 24 H 1.09004 * 109.46821 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47372 * 300.00014 * 1 2 3 26 26 H 0.96998 * 119.99982 * 180.02562 * 7 6 4 27 27 H 0.96997 * 119.99784 * 275.00308 * 12 2 1 28 28 H 1.09004 * 108.12358 * 31.39267 * 17 16 13 29 29 H 1.09005 * 108.12448 * 147.87188 * 17 16 13 30 30 H 1.09000 * 109.56590 * 199.65137 * 18 17 16 31 31 H 1.08994 * 109.66978 * 79.34409 * 18 17 16 32 32 H 1.08999 * 109.25929 * 201.86067 * 19 18 17 33 33 H 1.09007 * 109.25374 * 82.42754 * 19 18 17 34 34 H 1.08999 * 108.61751 * 146.34200 * 21 20 19 35 35 H 1.08995 * 108.62812 * 28.56671 * 21 20 19 36 36 H 1.08998 * 109.99628 * 297.48992 * 22 21 20 37 37 H 1.09004 * 110.07038 * 176.16220 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3213 -1.1200 4.0081 9 1 3.1465 -2.2866 3.6040 10 1 3.1465 -0.1870 4.8166 11 1 1.1660 -1.5864 4.8162 12 7 2.0185 -0.6906 -1.1961 13 16 2.4123 0.1770 -2.5504 14 8 1.3247 1.0591 -2.7922 15 8 2.8778 -0.7636 -3.5084 16 7 3.7098 1.1299 -2.1620 17 6 3.5156 2.4527 -1.6426 18 6 3.4444 3.5979 -2.6895 19 6 4.5101 3.3409 -3.7879 20 8 5.6765 2.8167 -3.2268 21 6 5.6966 1.4107 -3.4499 22 6 5.1117 0.6282 -2.3526 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7094 1.1620 3.4844 27 1 2.1111 -1.6562 -1.1947 28 1 2.5886 2.4591 -1.0692 29 1 4.3338 2.6709 -0.9562 30 1 3.6458 4.5516 -2.2015 31 1 2.4527 3.6210 -3.1411 32 1 4.7431 4.2801 -4.2896 33 1 4.1124 2.6341 -4.5162 34 1 6.7306 1.0953 -3.5896 35 1 5.1437 1.1953 -4.3642 36 1 5.6883 0.7774 -1.4398 37 1 5.0963 -0.4299 -2.6145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593539275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:17 Heat of formation + Delta-G solvation = -115.526435 kcal Electronic energy + Delta-G solvation = -21604.220610 eV Core-core repulsion = 18315.777612 eV Total energy + Delta-G solvation = -3288.442998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.60870 -36.81185 -35.53239 -35.31577 -35.25406 -32.60698 -32.20674 -28.47584 -28.26391 -25.86241 -25.24296 -22.43878 -21.29788 -20.92580 -18.95623 -17.54275 -17.32969 -16.54534 -16.29695 -15.83161 -15.55160 -15.08889 -14.74565 -14.28768 -13.63273 -13.49536 -13.08196 -12.64053 -12.51310 -12.31692 -12.09961 -12.00115 -11.68482 -11.61586 -11.45806 -11.17484 -11.10731 -11.03551 -10.77141 -10.57261 -10.36180 -10.29459 -10.14814 -9.59923 -9.22122 -8.80896 -8.65736 -8.30277 -6.16753 -4.24906 1.17636 3.20749 3.28950 3.31111 3.38504 3.98169 4.11434 4.31611 4.79136 4.91505 5.03154 5.09432 5.14534 5.20826 5.30345 5.32901 5.49941 5.58688 5.84810 5.89742 5.95204 6.07224 6.22512 6.37091 6.43547 6.81331 6.90075 7.03423 7.08394 7.17722 7.55988 7.68404 7.81387 8.01186 8.25369 8.78775 9.41724 10.88820 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.006391 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.412485 B = 4380.101467 C = 4670.271367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.276 3.724 3 H 0.041 0.959 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -1.111 6.111 13 S 2.781 3.219 14 O -0.980 6.980 15 O -1.004 7.004 16 N -1.001 6.001 17 C 0.128 3.872 18 C -0.168 4.168 19 C 0.053 3.947 20 O -0.353 6.353 21 C 0.036 3.964 22 C 0.098 3.902 23 H 0.024 0.976 24 H 0.031 0.969 25 H 0.091 0.909 26 H 0.264 0.736 27 H 0.406 0.594 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 2.665 -9.130 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.172 3.828 3 H 0.058 0.942 4 C -0.564 4.564 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.873 5.873 13 S 2.789 3.211 14 O -0.963 6.963 15 O -0.988 6.988 16 N -0.839 5.839 17 C 0.000 4.000 18 C -0.208 4.208 19 C -0.024 4.024 20 O -0.271 6.271 21 C -0.042 4.042 22 C -0.026 4.026 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.238 0.762 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.000 3.074 -9.722 12.368 hybrid contribution 0.268 -0.927 1.273 1.597 sum 7.267 2.147 -8.449 11.349 Atomic orbital electron populations 1.22243 0.98333 0.99872 1.01384 1.18511 0.91279 0.92039 0.81015 0.94152 1.21325 1.31865 1.13170 0.90034 0.91844 1.24925 0.94847 0.95018 0.99085 1.69886 1.36110 1.22610 1.23833 0.86424 0.78631 0.79593 0.82630 1.19767 1.20929 1.20899 1.55930 1.81152 1.18611 1.31631 1.01875 0.73046 0.72887 0.73290 1.93586 1.51469 1.66564 1.84712 1.93529 1.82119 1.62970 1.60193 1.58059 1.19465 1.24750 1.81615 1.20697 1.03282 0.81035 0.94975 1.23440 0.99732 0.99325 0.98258 1.22620 0.86010 0.98969 0.94834 1.87664 1.40064 1.19744 1.79611 1.21909 1.01816 0.82475 0.97980 1.21515 0.81888 0.98961 1.00273 0.95721 0.95000 0.89047 0.92613 0.76173 0.90346 0.90718 0.90222 0.90328 0.90737 0.92949 0.89372 0.92292 0.89623 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 9.29 37.16 0.35 -3.49 16 2 C 0.28 6.55 2.78 -69.08 -0.19 6.36 16 3 H 0.04 1.00 6.08 -51.93 -0.32 0.69 16 4 C -0.52 -13.38 8.76 -34.44 -0.30 -13.68 16 5 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.86 11.32 55.43 0.63 -23.23 16 8 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 N -1.11 -22.48 5.52 -5.88 -0.03 -22.52 16 13 S 2.78 52.59 6.00 -107.50 -0.65 51.94 16 14 O -0.98 -20.98 16.48 -57.17 -0.94 -21.92 16 15 O -1.00 -19.64 16.94 -57.17 -0.97 -20.60 16 16 N -1.00 -16.26 2.96 -115.55 -0.34 -16.61 16 17 C 0.13 2.04 4.78 -4.43 -0.02 2.02 16 18 C -0.17 -2.29 6.75 -24.34 -0.16 -2.46 16 19 C 0.05 0.67 6.38 38.31 0.24 0.91 16 20 O -0.35 -4.70 10.24 -31.94 -0.33 -5.03 16 21 C 0.04 0.43 6.01 34.24 0.21 0.64 16 22 C 0.10 1.31 6.26 -4.93 -0.03 1.28 16 23 H 0.02 0.56 7.64 -51.93 -0.40 0.17 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 26 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.41 7.58 8.83 -34.47 -0.30 7.27 16 28 H 0.08 1.41 5.99 -51.93 -0.31 1.10 16 29 H 0.07 1.15 7.99 -51.93 -0.41 0.73 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.66 6.66 -51.92 -0.35 0.31 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.71 6.77 -51.93 -0.35 0.35 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.10 1.26 7.28 -51.93 -0.38 0.89 16 LS Contribution 304.91 15.07 4.59 4.59 Total: -1.00 -30.22 304.91 -8.28 -38.50 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.21 Total: 6.54 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -0.01 Total: -6.85 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.25 Total: -62.35 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -2.24 Total: -47.55 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -0.65 Total: 51.94 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.22 -8.28 -38.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593539275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.031 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds