Wall clock time and date at job start Tue Mar 31 2020 01:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46880 * 2 1 4 4 C 1.50699 * 109.47061 * 119.99245 * 2 1 3 5 5 H 1.08006 * 119.99770 * 120.00594 * 4 2 1 6 6 C 1.37877 * 120.00459 * 300.00483 * 4 2 1 7 7 N 1.31516 * 119.99956 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00225 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46820 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46927 * 119.99979 * 8 6 4 11 11 H 1.48502 * 109.46910 * 240.00019 * 8 6 4 12 12 N 1.46497 * 109.47728 * 239.99639 * 2 1 3 13 13 S 1.65598 * 120.00175 * 94.99474 * 12 2 1 14 14 O 1.42102 * 106.40051 * 311.46758 * 13 12 2 15 15 O 1.42094 * 106.40487 * 178.54444 * 13 12 2 16 16 N 1.65603 * 107.21432 * 65.00524 * 13 12 2 17 17 C 1.43430 * 120.63428 * 269.71728 * 16 13 12 18 18 C 1.55327 * 116.24042 * 269.63292 * 17 16 13 19 19 C 1.55186 * 108.87140 * 319.46387 * 18 17 16 20 20 O 1.39642 * 110.57207 * 322.14736 * 19 18 17 21 21 C 1.42378 * 108.63572 * 101.17390 * 20 19 18 22 22 C 1.46918 * 113.78521 * 267.44976 * 21 20 19 23 23 H 1.08995 * 109.47048 * 60.00856 * 1 2 3 24 24 H 1.09004 * 109.46821 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47372 * 300.00014 * 1 2 3 26 26 H 0.96998 * 119.99982 * 180.02562 * 7 6 4 27 27 H 0.96997 * 119.99784 * 275.00308 * 12 2 1 28 28 H 1.09004 * 108.12358 * 31.39267 * 17 16 13 29 29 H 1.09005 * 108.12448 * 147.87188 * 17 16 13 30 30 H 1.09000 * 109.56590 * 199.65137 * 18 17 16 31 31 H 1.08994 * 109.66978 * 79.34409 * 18 17 16 32 32 H 1.08999 * 109.25929 * 201.86067 * 19 18 17 33 33 H 1.09007 * 109.25374 * 82.42754 * 19 18 17 34 34 H 1.08999 * 108.61751 * 146.34200 * 21 20 19 35 35 H 1.08995 * 108.62812 * 28.56671 * 21 20 19 36 36 H 1.08998 * 109.99628 * 297.48992 * 22 21 20 37 37 H 1.09004 * 110.07038 * 176.16220 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3213 -1.1200 4.0081 9 1 3.1465 -2.2866 3.6040 10 1 3.1465 -0.1870 4.8166 11 1 1.1660 -1.5864 4.8162 12 7 2.0185 -0.6906 -1.1961 13 16 2.4123 0.1770 -2.5504 14 8 1.3247 1.0591 -2.7922 15 8 2.8778 -0.7636 -3.5084 16 7 3.7098 1.1299 -2.1620 17 6 3.5156 2.4527 -1.6426 18 6 3.4444 3.5979 -2.6895 19 6 4.5101 3.3409 -3.7879 20 8 5.6765 2.8167 -3.2268 21 6 5.6966 1.4107 -3.4499 22 6 5.1117 0.6282 -2.3526 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7094 1.1620 3.4844 27 1 2.1111 -1.6562 -1.1947 28 1 2.5886 2.4591 -1.0692 29 1 4.3338 2.6709 -0.9562 30 1 3.6458 4.5516 -2.2015 31 1 2.4527 3.6210 -3.1411 32 1 4.7431 4.2801 -4.2896 33 1 4.1124 2.6341 -4.5162 34 1 6.7306 1.0953 -3.5896 35 1 5.1437 1.1953 -4.3642 36 1 5.6883 0.7774 -1.4398 37 1 5.0963 -0.4299 -2.6145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593539275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:17 Heat of formation + Delta-G solvation = -138.550058 kcal Electronic energy + Delta-G solvation = -21605.218989 eV Core-core repulsion = 18315.777612 eV Total energy + Delta-G solvation = -3289.441377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.64263 -38.40681 -37.26169 -36.91724 -36.54205 -34.11119 -33.67479 -30.13653 -29.55867 -27.24694 -26.99013 -23.50295 -22.86824 -22.40226 -20.46299 -19.10047 -18.77515 -18.02725 -17.62537 -17.18654 -16.87349 -16.61357 -16.10012 -15.70066 -15.27340 -14.69664 -14.45994 -14.14097 -14.11128 -13.71078 -13.51634 -13.39142 -13.30293 -13.22670 -13.02119 -12.91735 -12.85388 -12.36760 -12.27145 -12.19528 -12.00986 -11.77797 -11.52738 -11.07050 -10.64894 -10.56766 -10.19358 -9.99454 -8.13941 -6.28380 -0.33495 1.44075 1.47233 1.57209 1.93509 2.43669 2.58116 3.05181 3.15707 3.39755 3.64719 3.92187 4.05335 4.15545 4.29077 4.33012 4.46621 4.50689 4.64735 4.78726 4.84747 4.87258 4.92661 4.98956 5.07334 5.09511 5.13895 5.24771 5.58169 5.63563 5.74113 6.00750 6.10203 6.21090 6.40983 6.82798 7.41586 8.91465 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.006391 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.412485 B = 4380.101467 C = 4670.271367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.280 3.720 3 H 0.027 0.973 4 C -0.536 4.536 5 H 0.067 0.933 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.961 3.039 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.283 1.283 12 N -1.112 6.112 13 S 2.796 3.204 14 O -1.008 7.008 15 O -1.008 7.008 16 N -0.999 5.999 17 C 0.125 3.875 18 C -0.166 4.166 19 C 0.053 3.947 20 O -0.361 6.361 21 C 0.032 3.968 22 C 0.091 3.909 23 H 0.025 0.975 24 H 0.035 0.965 25 H 0.071 0.929 26 H 0.265 0.735 27 H 0.412 0.588 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.120 0.880 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.088 2.354 -9.392 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.175 3.825 3 H 0.045 0.955 4 C -0.576 4.576 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.787 3.213 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.209 1.209 12 N -0.873 5.873 13 S 2.804 3.196 14 O -0.991 6.991 15 O -0.992 6.992 16 N -0.839 5.839 17 C -0.002 4.002 18 C -0.206 4.206 19 C -0.025 4.025 20 O -0.279 6.279 21 C -0.046 4.046 22 C -0.032 4.032 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.246 0.754 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.138 0.862 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.699 2.740 -9.999 13.534 hybrid contribution -0.232 -0.816 1.320 1.569 sum 8.467 1.925 -8.679 12.276 Atomic orbital electron populations 1.22156 0.98943 0.99767 1.00403 1.18248 0.90801 0.91594 0.81866 0.95511 1.21608 1.31840 1.13316 0.90804 0.91482 1.25671 0.95035 0.95650 1.01823 1.70002 1.37039 1.23791 1.24450 0.85457 0.78023 0.78644 0.79157 1.18998 1.20719 1.20904 1.55802 1.81579 1.19132 1.30832 1.01309 0.72958 0.72494 0.72820 1.93545 1.53395 1.67123 1.85072 1.93518 1.82196 1.63341 1.60119 1.57881 1.20175 1.24485 1.81395 1.20753 1.02026 0.81592 0.95843 1.23447 0.99945 0.99019 0.98215 1.22694 0.85479 1.00153 0.94181 1.87658 1.40057 1.20376 1.79798 1.22023 1.03603 0.81804 0.97123 1.21847 0.80032 0.99770 1.01539 0.95619 0.94579 0.91045 0.92566 0.75411 0.93187 0.90114 0.88500 0.91326 0.88306 0.93162 0.86174 0.92326 0.88613 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.51 9.29 71.98 0.67 -6.84 16 2 C 0.28 13.42 2.78 44.25 0.12 13.54 16 3 H 0.03 1.37 6.08 -2.39 -0.01 1.36 16 4 C -0.54 -27.20 8.76 25.60 0.22 -26.97 16 5 H 0.07 3.28 7.81 -2.91 -0.02 3.26 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.91 -49.58 11.32 21.45 0.24 -49.34 16 8 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 9 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 N -1.11 -44.78 5.52 -172.53 -0.95 -45.74 16 13 S 2.80 104.76 6.00 -56.49 -0.34 104.42 16 14 O -1.01 -43.55 16.48 -128.00 -2.11 -45.66 16 15 O -1.01 -38.27 16.94 -128.00 -2.17 -40.44 16 16 N -1.00 -31.65 2.96 -519.50 -1.54 -33.19 16 17 C 0.13 3.97 4.78 87.75 0.42 4.39 16 18 C -0.17 -4.39 6.75 32.14 0.22 -4.17 16 19 C 0.05 1.21 6.38 72.73 0.46 1.67 16 20 O -0.36 -8.69 10.24 -137.21 -1.41 -10.09 16 21 C 0.03 0.69 6.01 70.10 0.42 1.11 16 22 C 0.09 2.25 6.26 83.79 0.52 2.77 16 23 H 0.02 1.20 7.64 -2.39 -0.02 1.18 16 24 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 26 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 27 H 0.41 15.16 8.83 -96.75 -0.85 14.31 16 28 H 0.05 1.86 5.99 -2.38 -0.01 1.85 16 29 H 0.08 2.43 7.99 -2.38 -0.02 2.41 16 30 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.17 6.66 -2.38 -0.02 1.16 16 34 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.27 6.77 -2.39 -0.02 1.25 16 36 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.11 2.50 7.28 -2.38 -0.02 2.49 16 Total: -1.00 -62.89 304.91 -2.50 -65.39 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.23 Total: 24.75 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 3.51 Total: -13.09 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -2.25 Total: -128.27 kcal Atomic # 8 Polarization: -90.51 SS G_CDS: -5.68 Total: -96.19 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 104.76 SS G_CDS: -0.34 Total: 104.42 kcal Total: -62.89 -2.50 -65.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593539275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.160 kcal (2) G-P(sol) polarization free energy of solvation -62.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds