Wall clock time and date at job start Tue Mar 31 2020 00:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 110.00323 * 2 1 4 4 C 1.54340 * 109.99018 * 238.96079 * 2 1 3 5 5 H 1.08999 * 110.84818 * 100.19766 * 4 2 1 6 6 O 1.42897 * 110.66715 * 337.04675 * 4 2 1 7 7 C 1.55162 * 103.01972 * 218.66388 * 4 2 1 8 8 C 1.54911 * 101.58051 * 35.30956 * 7 4 2 9 9 N 1.47024 * 109.88720 * 121.09661 * 2 1 3 10 10 S 1.65603 * 125.64223 * 298.39654 * 9 2 1 11 11 O 1.42105 * 106.39924 * 156.17407 * 10 9 2 12 12 O 1.42094 * 106.40678 * 23.25198 * 10 9 2 13 13 N 1.65600 * 107.21636 * 269.70954 * 10 9 2 14 14 C 1.46499 * 120.00499 * 270.00218 * 13 10 9 15 15 C 1.46506 * 119.99952 * 90.00317 * 13 10 9 16 16 C 1.50696 * 109.46871 * 94.99625 * 15 13 10 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 15 13 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 H 1.09003 * 109.46965 * 298.90462 * 1 2 3 25 25 H 1.08996 * 109.47359 * 58.90225 * 1 2 3 26 26 H 1.09006 * 109.47265 * 178.90604 * 1 2 3 27 27 H 0.96699 * 113.99957 * 184.95857 * 6 4 2 28 28 H 1.08992 * 111.00236 * 277.23318 * 7 4 2 29 29 H 1.09002 * 111.00033 * 153.38202 * 7 4 2 30 30 H 1.08997 * 110.36264 * 204.15357 * 8 7 4 31 31 H 1.08994 * 110.46281 * 81.87615 * 8 7 4 32 32 H 1.09001 * 109.47223 * 270.00709 * 14 13 10 33 33 H 1.09005 * 109.46822 * 30.00141 * 14 13 10 34 34 H 1.08997 * 109.47514 * 149.99964 * 14 13 10 35 35 H 1.09005 * 109.46943 * 334.99946 * 15 13 10 36 36 H 1.09002 * 109.47064 * 215.00208 * 15 13 10 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0575 -0.7479 -1.2427 5 1 2.3596 -0.0451 -2.0192 6 8 1.0730 -1.6560 -1.7406 7 6 3.2863 -1.5184 -0.6915 8 6 2.8099 -1.8826 0.7369 9 7 2.0301 -0.7141 1.1839 10 16 1.7565 -0.2814 2.7588 11 8 1.9044 -1.4649 3.5315 12 8 0.5724 0.5041 2.7594 13 7 2.9883 0.7289 3.2106 14 6 4.2092 0.1765 3.8025 15 6 2.8571 2.1754 3.0186 16 6 2.3537 2.8074 4.2907 17 1 2.1522 2.1932 5.1558 18 6 2.1506 4.1699 4.3500 19 7 1.7118 4.7215 5.4603 20 14 2.4985 5.2321 2.8534 21 1 3.9102 5.6916 2.8898 22 1 2.2677 4.4392 1.6191 23 1 1.5942 6.4100 2.8614 24 1 -0.3633 0.4967 0.8997 25 1 -0.3634 0.5308 -0.8799 26 1 -0.3634 -1.0275 -0.0196 27 1 1.3803 -2.2058 -2.4744 28 1 4.1668 -0.8769 -0.6580 29 1 3.4806 -2.4156 -1.2792 30 1 3.6655 -2.0412 1.3932 31 1 2.1806 -2.7722 0.7134 32 1 4.0974 0.1261 4.8855 33 1 4.3832 -0.8248 3.4082 34 1 5.0555 0.8168 3.5539 35 1 2.1516 2.3722 2.2112 36 1 3.8289 2.5976 2.7628 37 1 1.5692 5.6801 5.5022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594780618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:49 Heat of formation + Delta-G solvation = -111.274686 kcal Electronic energy + Delta-G solvation = -21518.682483 eV Core-core repulsion = 18230.423855 eV Total energy + Delta-G solvation = -3288.258628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.33039 -36.70300 -35.63485 -35.49763 -35.19590 -32.38676 -31.30803 -29.85385 -28.40231 -25.59736 -25.10066 -22.15484 -21.87855 -20.98018 -18.46570 -17.65859 -17.17784 -16.93675 -16.62195 -15.88849 -15.30040 -14.62459 -14.23595 -13.94058 -13.81248 -13.42619 -13.08911 -12.87753 -12.75885 -12.44548 -12.40701 -12.30646 -11.81758 -11.71141 -11.56082 -11.31430 -11.29558 -11.10502 -11.00775 -10.62497 -10.56414 -10.37071 -10.22081 -10.15707 -9.56360 -8.91919 -8.59658 -8.12469 -6.08286 -4.07507 1.06644 3.24466 3.31626 3.32389 3.42949 3.92429 4.07779 4.30512 4.37463 4.51430 4.74937 4.99552 5.15267 5.18849 5.31660 5.37689 5.46394 5.52391 5.59480 5.65610 5.84222 5.91876 5.96303 6.17199 6.21663 6.38205 6.41466 6.56002 6.69406 6.72286 7.05050 7.38216 7.46705 7.57391 8.48979 8.96776 9.50451 11.05418 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.006908 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.822062 B = 4052.251651 C = 4522.859536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.158 3.842 3 H 0.083 0.917 4 C 0.098 3.902 5 H 0.074 0.926 6 O -0.552 6.552 7 C -0.163 4.163 8 C 0.129 3.871 9 N -1.020 6.020 10 S 2.794 3.206 11 O -0.988 6.988 12 O -0.952 6.952 13 N -0.993 5.993 14 C 0.108 3.892 15 C 0.228 3.772 16 C -0.531 4.531 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.874 3.126 21 H -0.275 1.275 22 H -0.265 1.265 23 H -0.283 1.283 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.374 0.626 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 -11.855 -16.033 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.052 3.948 3 H 0.101 0.899 4 C 0.038 3.962 5 H 0.092 0.908 6 O -0.357 6.357 7 C -0.202 4.202 8 C 0.003 3.997 9 N -0.859 5.859 10 S 2.804 3.196 11 O -0.972 6.972 12 O -0.936 6.936 13 N -0.834 5.834 14 C -0.039 4.039 15 C 0.105 3.895 16 C -0.570 4.570 17 H 0.095 0.905 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.700 3.300 21 H -0.201 1.201 22 H -0.189 1.189 23 H -0.208 1.208 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.221 0.779 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.201 -11.644 -14.825 19.313 hybrid contribution 0.952 0.604 -1.280 1.706 sum 5.153 -11.039 -16.105 20.194 Atomic orbital electron populations 1.22238 0.93790 1.03306 1.03841 1.21286 0.95734 0.94765 0.83050 0.89868 1.22780 0.87477 0.91021 0.94962 0.90799 1.86603 1.39821 1.54860 1.54405 1.23500 0.98592 1.01201 0.96936 1.21811 0.94565 0.88568 0.94769 1.59536 1.66572 1.36761 1.22982 1.01675 0.73751 0.72592 0.71582 1.93542 1.87155 1.48748 1.67761 1.93592 1.44253 1.70273 1.85466 1.57554 1.32487 1.18611 1.74769 1.21239 0.87029 0.96784 0.98805 1.19454 0.96901 0.75159 0.97999 1.21370 1.44493 0.93086 0.98070 0.90457 1.24879 0.94518 0.97757 0.95853 1.69898 1.45539 1.11529 1.26321 0.86897 0.78469 0.80697 0.83901 1.20097 1.18924 1.20823 0.89372 0.91918 0.91605 0.77877 0.89726 0.89869 0.91053 0.91366 0.92688 0.92948 0.91491 0.94967 0.95452 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 8.60 37.15 0.32 -2.33 16 2 C 0.16 2.22 3.65 -66.95 -0.24 1.98 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.10 0.97 4.18 -24.88 -0.10 0.87 16 5 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 6 O -0.55 -5.33 11.74 -35.23 -0.41 -5.74 16 7 C -0.16 -1.40 6.81 -24.58 -0.17 -1.57 16 8 C 0.13 1.54 6.98 -2.53 -0.02 1.53 16 9 N -1.02 -15.87 3.46 -104.42 -0.36 -16.23 16 10 S 2.79 56.78 6.22 -107.50 -0.67 56.11 16 11 O -0.99 -21.35 16.80 -57.17 -0.96 -22.31 16 12 O -0.95 -22.66 14.25 -57.17 -0.81 -23.48 16 13 N -0.99 -20.45 3.23 -123.05 -0.40 -20.84 16 14 C 0.11 1.84 10.33 59.85 0.62 2.46 16 15 C 0.23 5.38 4.19 -5.19 -0.02 5.36 16 16 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 17 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 19 N -0.89 -27.66 13.96 55.43 0.77 -26.88 16 20 Si 0.87 21.03 27.47 -169.99 -4.67 16.36 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.09 1.61 5.72 -51.93 -0.30 1.31 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.01 7.38 -51.93 -0.38 0.63 16 27 H 0.37 1.82 9.11 45.56 0.42 2.24 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 34 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 35 H 0.03 0.76 6.66 -51.93 -0.35 0.42 16 36 H 0.03 0.60 7.39 -51.93 -0.38 0.22 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 311.50 15.07 4.69 4.69 Total: -1.00 -35.91 311.50 -7.66 -43.57 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.78 Total: 0.06 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -0.06 Total: -5.31 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: 0.02 Total: -63.96 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -2.19 Total: -51.53 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 16 Polarization: 56.78 SS G_CDS: -0.67 Total: 56.11 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.91 -7.66 -43.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594780618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.707 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds