Wall clock time and date at job start Tue Mar 31 2020 00:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 110.00323 * 2 1 4 4 C 1.54340 * 109.99018 * 238.96079 * 2 1 3 5 5 H 1.08999 * 110.84818 * 100.19766 * 4 2 1 6 6 O 1.42897 * 110.66715 * 337.04675 * 4 2 1 7 7 C 1.55162 * 103.01972 * 218.66388 * 4 2 1 8 8 C 1.54911 * 101.58051 * 35.30956 * 7 4 2 9 9 N 1.47024 * 109.88720 * 121.09661 * 2 1 3 10 10 S 1.65603 * 125.64223 * 298.39654 * 9 2 1 11 11 O 1.42105 * 106.39924 * 156.17407 * 10 9 2 12 12 O 1.42094 * 106.40678 * 23.25198 * 10 9 2 13 13 N 1.65600 * 107.21636 * 269.70954 * 10 9 2 14 14 C 1.46499 * 120.00499 * 270.00218 * 13 10 9 15 15 C 1.46506 * 119.99952 * 90.00317 * 13 10 9 16 16 C 1.50696 * 109.46871 * 94.99625 * 15 13 10 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 15 13 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 H 1.09003 * 109.46965 * 298.90462 * 1 2 3 25 25 H 1.08996 * 109.47359 * 58.90225 * 1 2 3 26 26 H 1.09006 * 109.47265 * 178.90604 * 1 2 3 27 27 H 0.96699 * 113.99957 * 184.95857 * 6 4 2 28 28 H 1.08992 * 111.00236 * 277.23318 * 7 4 2 29 29 H 1.09002 * 111.00033 * 153.38202 * 7 4 2 30 30 H 1.08997 * 110.36264 * 204.15357 * 8 7 4 31 31 H 1.08994 * 110.46281 * 81.87615 * 8 7 4 32 32 H 1.09001 * 109.47223 * 270.00709 * 14 13 10 33 33 H 1.09005 * 109.46822 * 30.00141 * 14 13 10 34 34 H 1.08997 * 109.47514 * 149.99964 * 14 13 10 35 35 H 1.09005 * 109.46943 * 334.99946 * 15 13 10 36 36 H 1.09002 * 109.47064 * 215.00208 * 15 13 10 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0575 -0.7479 -1.2427 5 1 2.3596 -0.0451 -2.0192 6 8 1.0730 -1.6560 -1.7406 7 6 3.2863 -1.5184 -0.6915 8 6 2.8099 -1.8826 0.7369 9 7 2.0301 -0.7141 1.1839 10 16 1.7565 -0.2814 2.7588 11 8 1.9044 -1.4649 3.5315 12 8 0.5724 0.5041 2.7594 13 7 2.9883 0.7289 3.2106 14 6 4.2092 0.1765 3.8025 15 6 2.8571 2.1754 3.0186 16 6 2.3537 2.8074 4.2907 17 1 2.1522 2.1932 5.1558 18 6 2.1506 4.1699 4.3500 19 7 1.7118 4.7215 5.4603 20 14 2.4985 5.2321 2.8534 21 1 3.9102 5.6916 2.8898 22 1 2.2677 4.4392 1.6191 23 1 1.5942 6.4100 2.8614 24 1 -0.3633 0.4967 0.8997 25 1 -0.3634 0.5308 -0.8799 26 1 -0.3634 -1.0275 -0.0196 27 1 1.3803 -2.2058 -2.4744 28 1 4.1668 -0.8769 -0.6580 29 1 3.4806 -2.4156 -1.2792 30 1 3.6655 -2.0412 1.3932 31 1 2.1806 -2.7722 0.7134 32 1 4.0974 0.1261 4.8855 33 1 4.3832 -0.8248 3.4082 34 1 5.0555 0.8168 3.5539 35 1 2.1516 2.3722 2.2112 36 1 3.8289 2.5976 2.7628 37 1 1.5692 5.6801 5.5022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594780618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:49 Heat of formation + Delta-G solvation = -142.402778 kcal Electronic energy + Delta-G solvation = -21520.032298 eV Core-core repulsion = 18230.423855 eV Total energy + Delta-G solvation = -3289.608444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.21913 -38.39483 -37.32579 -36.91008 -36.31359 -34.52634 -32.30342 -30.82738 -30.29906 -26.92362 -26.43892 -23.88571 -23.02785 -21.94145 -19.86357 -19.22395 -18.64691 -18.47704 -17.99851 -17.16733 -16.60369 -16.19470 -15.54389 -15.45536 -14.86488 -14.64830 -14.59805 -14.42526 -14.29525 -13.81130 -13.65334 -13.45275 -13.32941 -13.16445 -13.08689 -13.03780 -12.65702 -12.37999 -12.35781 -12.17192 -12.06293 -11.92168 -11.72999 -11.43196 -10.80733 -10.78705 -10.09859 -9.81138 -8.29943 -6.36488 -0.48441 1.35287 1.40932 1.50161 1.99811 2.35183 2.52476 3.03399 3.12815 3.34210 3.64164 3.74973 3.95715 4.11965 4.23035 4.35421 4.54091 4.59100 4.64636 4.69084 4.75033 4.77659 4.81916 4.93487 5.02023 5.08422 5.20060 5.23863 5.32842 5.42404 5.47558 5.50048 5.77696 6.29041 6.66121 7.05574 7.26493 8.88016 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.006908 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.822062 B = 4052.251651 C = 4522.859536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 H 0.085 0.915 4 C 0.108 3.892 5 H 0.104 0.896 6 O -0.571 6.571 7 C -0.147 4.147 8 C 0.112 3.888 9 N -1.014 6.014 10 S 2.803 3.197 11 O -1.010 7.010 12 O -0.998 6.998 13 N -1.000 6.000 14 C 0.099 3.901 15 C 0.236 3.764 16 C -0.546 4.546 17 H 0.023 0.977 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.948 3.052 21 H -0.251 1.251 22 H -0.237 1.237 23 H -0.284 1.284 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.397 0.603 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.035 0.965 36 H 0.057 0.943 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.611 -12.283 -20.093 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.035 3.965 3 H 0.103 0.897 4 C 0.048 3.952 5 H 0.122 0.878 6 O -0.380 6.380 7 C -0.186 4.186 8 C -0.012 4.012 9 N -0.856 5.856 10 S 2.814 3.186 11 O -0.994 6.994 12 O -0.982 6.982 13 N -0.841 5.841 14 C -0.047 4.047 15 C 0.112 3.888 16 C -0.585 4.585 17 H 0.041 0.959 18 C -0.193 4.193 19 N -0.590 5.590 20 Si 0.769 3.231 21 H -0.176 1.176 22 H -0.160 1.160 23 H -0.210 1.210 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.248 0.752 28 H 0.117 0.883 29 H 0.135 0.865 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.488 -12.125 -18.885 23.361 hybrid contribution 0.186 0.600 0.043 0.630 sum 6.673 -11.525 -18.842 23.073 Atomic orbital electron populations 1.22173 0.95399 1.02626 1.02796 1.21620 0.94659 0.95774 0.84402 0.89713 1.22702 0.87355 0.91550 0.93595 0.87806 1.86549 1.40394 1.55364 1.55676 1.23509 0.98164 1.02674 0.94234 1.22209 0.94473 0.87068 0.97494 1.59085 1.67023 1.37923 1.21570 1.01036 0.73081 0.71919 0.72545 1.93498 1.87306 1.49260 1.69367 1.93538 1.46715 1.71351 1.86624 1.57501 1.33522 1.17436 1.75660 1.21491 0.86466 0.99017 0.97688 1.19245 0.97875 0.76618 0.95081 1.21701 1.44801 0.93270 0.98739 0.95906 1.26008 0.94014 0.99478 0.99792 1.70086 1.47359 1.12145 1.29406 0.85717 0.79369 0.78212 0.79759 1.17562 1.15997 1.21003 0.93124 0.90058 0.92196 0.75212 0.88296 0.86536 0.90156 0.91643 0.94790 0.89761 0.89003 0.94676 0.92482 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 8.60 71.98 0.62 -4.54 16 2 C 0.14 3.66 3.65 45.34 0.17 3.83 16 3 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.11 1.68 4.18 31.79 0.13 1.81 16 5 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 6 O -0.57 -8.84 11.74 -148.98 -1.75 -10.58 16 7 C -0.15 -1.78 6.81 31.99 0.22 -1.56 16 8 C 0.11 2.36 6.98 86.86 0.61 2.96 16 9 N -1.01 -30.04 3.46 -484.27 -1.67 -31.71 16 10 S 2.80 115.42 6.22 -56.49 -0.35 115.07 16 11 O -1.01 -44.45 16.80 -128.00 -2.15 -46.60 16 12 O -1.00 -49.65 14.25 -128.00 -1.82 -51.47 16 13 N -1.00 -40.91 3.23 -543.21 -1.75 -42.67 16 14 C 0.10 3.26 10.33 127.77 1.32 4.58 16 15 C 0.24 10.95 4.19 85.63 0.36 11.31 16 16 C -0.55 -32.40 9.94 25.60 0.25 -32.14 16 17 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 18 C 0.00 0.27 5.47 84.66 0.46 0.74 16 19 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 20 Si 0.95 42.63 27.47 68.60 1.88 44.52 16 21 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H 0.05 1.90 5.72 -2.39 -0.01 1.89 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 1.82 7.38 -2.38 -0.02 1.80 16 27 H 0.40 2.04 9.11 -74.06 -0.67 1.36 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.08 2.21 7.79 -2.38 -0.02 2.19 16 34 H 0.09 2.55 7.94 -2.39 -0.02 2.53 16 35 H 0.04 1.62 6.66 -2.38 -0.02 1.60 16 36 H 0.06 2.33 7.39 -2.39 -0.02 2.31 16 37 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -83.51 311.50 -2.84 -86.35 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.34 Total: 10.78 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 4.14 Total: -13.01 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -3.13 Total: -135.04 kcal Atomic # 8 Polarization: -102.93 SS G_CDS: -5.72 Total: -108.65 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.88 Total: 44.52 kcal Atomic # 16 Polarization: 115.42 SS G_CDS: -0.35 Total: 115.07 kcal Total: -83.51 -2.84 -86.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594780618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.056 kcal (2) G-P(sol) polarization free energy of solvation -83.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds