Wall clock time and date at job start Tue Mar 31 2020 00:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47274 * 2 1 4 4 C 1.50696 * 109.47008 * 239.99714 * 2 1 3 5 5 H 1.08002 * 120.00305 * 240.00012 * 4 2 1 6 6 C 1.37879 * 120.00023 * 60.00409 * 4 2 1 7 7 N 1.31509 * 119.99860 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00118 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47294 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47153 * 119.99863 * 8 6 4 11 11 H 1.48501 * 109.47031 * 239.99990 * 8 6 4 12 12 C 1.53001 * 109.46871 * 120.00406 * 2 1 3 13 13 S 1.81405 * 109.46910 * 299.99481 * 12 2 1 14 14 C 1.76201 * 102.99906 * 180.02562 * 13 12 2 15 15 C 1.38936 * 120.20341 * 0.02562 * 14 13 12 16 16 C 1.37864 * 120.26729 * 180.17991 * 15 14 13 17 17 C 1.39288 * 120.34798 * 359.97438 * 16 15 14 18 18 C 1.38963 * 118.99320 * 359.61488 * 17 16 15 19 19 C 1.37627 * 120.84955 * 0.59201 * 18 17 16 20 20 C 1.51665 * 106.99625 * 180.57430 * 18 17 16 21 21 C 1.54699 * 101.94983 * 15.72832 * 20 18 17 22 22 O 1.36271 * 129.77208 * 179.58875 * 17 16 15 23 23 H 1.08998 * 109.47032 * 300.00346 * 1 2 3 24 24 H 1.09004 * 109.46979 * 59.99661 * 1 2 3 25 25 H 1.08999 * 109.47520 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47103 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47080 * 299.99724 * 3 2 1 28 28 H 1.09001 * 109.47213 * 60.00348 * 3 2 1 29 29 H 0.97005 * 120.00170 * 180.02562 * 7 6 4 30 30 H 1.09010 * 109.47255 * 180.02562 * 12 2 1 31 31 H 1.08995 * 109.47945 * 59.99959 * 12 2 1 32 32 H 1.08005 * 119.86471 * 0.15106 * 15 14 13 33 33 H 1.08002 * 119.82484 * 179.97438 * 16 15 14 34 34 H 1.08008 * 120.01533 * 179.57273 * 19 18 17 35 35 H 1.09002 * 110.94285 * 257.55228 * 20 18 17 36 36 H 1.08997 * 110.93728 * 133.89868 * 20 18 17 37 37 H 1.09000 * 110.74876 * 92.91789 * 21 20 18 38 38 H 1.09003 * 110.74587 * 216.07540 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1473 -2.2865 -3.6038 10 1 1.1677 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8160 12 6 2.0399 -0.7214 1.2492 13 16 1.4353 0.1338 2.7304 14 6 2.1130 -0.8235 4.0452 15 6 2.8997 -1.9346 3.7674 16 6 3.4275 -2.6867 4.7952 17 6 3.1781 -2.3402 6.1210 18 6 2.3974 -1.2224 6.3895 19 6 1.8649 -0.4711 5.3667 20 6 2.3148 -1.0914 7.8983 21 6 3.4650 -2.0154 8.3634 22 8 3.5903 -2.9423 7.2718 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7082 1.1608 -3.4844 30 1 3.1300 -0.7210 1.2495 31 1 1.6766 -1.7490 1.2493 32 1 3.0980 -2.2103 2.7422 33 1 4.0377 -3.5492 4.5711 34 1 1.2543 0.3911 5.5908 35 1 1.3539 -1.4490 8.2684 36 1 2.4916 -0.0621 8.2101 37 1 4.3863 -1.4482 8.4960 38 1 3.1962 -2.5330 9.2843 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594904825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:55 Heat of formation + Delta-G solvation = -17.831483 kcal Electronic energy + Delta-G solvation = -18851.592391 eV Core-core repulsion = 15978.235027 eV Total energy + Delta-G solvation = -2873.357364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00798 -37.31873 -36.02296 -32.76746 -31.58037 -30.08008 -29.34193 -26.34085 -25.66973 -25.16106 -23.55785 -22.34489 -21.69203 -19.04422 -17.43677 -17.08378 -16.47804 -16.16747 -15.84694 -14.75856 -14.26663 -14.07744 -13.78201 -13.52297 -13.27145 -13.11622 -12.95078 -12.69758 -12.43929 -11.89147 -11.61359 -11.49184 -11.21353 -11.11426 -10.92323 -10.81908 -10.64740 -10.33158 -10.12876 -9.75843 -9.57579 -9.44440 -8.96375 -8.70324 -8.64490 -8.39254 -6.74536 -6.02902 -4.14465 1.27742 1.37740 2.10060 3.11811 3.22649 3.25343 3.34217 3.37553 3.68271 4.29579 4.37778 4.48946 4.77898 4.87493 5.15924 5.23363 5.24064 5.33777 5.51352 5.56958 5.65637 5.90225 5.97513 6.05733 6.12705 6.36981 6.40155 6.46952 6.56459 6.78068 6.92558 7.07885 7.09264 7.15933 7.35564 7.59101 7.68638 8.02458 8.13656 8.36687 8.84851 9.51198 10.98083 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038742 B = 0.003700 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.551112 B = 7565.829568 C = 8079.363172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.082 3.918 3 C -0.134 4.134 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.893 3.107 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.076 4.076 13 S -0.117 6.117 14 C -0.104 4.104 15 C -0.102 4.102 16 C -0.115 4.115 17 C 0.082 3.918 18 C -0.159 4.159 19 C -0.059 4.059 20 C -0.108 4.108 21 C 0.052 3.948 22 O -0.308 6.308 23 H 0.019 0.981 24 H 0.085 0.915 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.019 0.981 29 H 0.260 0.740 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 -2.887 17.705 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.080 3.920 3 C -0.192 4.192 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.223 4.223 13 S 0.130 5.870 14 C -0.217 4.217 15 C -0.126 4.126 16 C -0.136 4.136 17 C 0.034 3.966 18 C -0.162 4.162 19 C -0.083 4.083 20 C -0.145 4.145 21 C -0.023 4.023 22 O -0.223 6.223 23 H 0.038 0.962 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.067 -1.959 17.536 17.765 hybrid contribution 1.117 -1.524 -0.789 2.047 sum 3.184 -3.483 16.747 17.399 Atomic orbital electron populations 1.21883 0.97291 0.99295 1.00737 1.17990 0.93036 0.92521 0.88424 1.21882 0.98471 0.98108 1.00735 1.21048 1.31714 1.12139 0.89794 0.92546 1.24883 0.94846 0.94918 0.98792 1.69827 1.36423 1.22658 1.23185 0.86521 0.78655 0.79687 0.83036 1.19829 1.20999 1.20995 1.24184 1.02567 1.01599 0.93997 1.85614 1.64840 1.39017 0.97532 1.22037 1.02208 0.99609 0.97821 1.21050 0.97673 0.94546 0.99359 1.20129 1.03099 1.01982 0.88367 1.19480 0.96120 0.93273 0.87678 1.20600 1.01944 0.98593 0.95040 1.19821 0.99728 0.99341 0.89443 1.21774 0.99872 1.01480 0.91424 1.23767 0.98292 0.90506 0.89726 1.86821 1.83082 1.37550 1.14816 0.96188 0.89605 0.95498 0.95507 0.89611 0.96185 0.92963 0.90809 0.90797 0.84624 0.85459 0.85505 0.89225 0.89128 0.90760 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.01 37.16 0.30 -2.87 16 2 C 0.08 1.93 0.52 -155.67 -0.08 1.85 16 3 C -0.13 -3.16 8.01 37.16 0.30 -2.86 16 4 C -0.51 -13.16 8.01 -34.44 -0.28 -13.44 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -23.75 9.35 55.43 0.52 -23.23 16 8 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C -0.08 -1.53 3.28 37.16 0.12 -1.41 16 13 S -0.12 -2.15 18.98 -107.50 -2.04 -4.19 16 14 C -0.10 -1.70 6.11 -39.04 -0.24 -1.94 16 15 C -0.10 -1.59 9.35 -39.46 -0.37 -1.96 16 16 C -0.12 -1.65 10.05 -39.33 -0.40 -2.05 16 17 C 0.08 1.16 7.04 -38.92 -0.27 0.89 16 18 C -0.16 -2.11 6.27 -104.10 -0.65 -2.76 16 19 C -0.06 -0.86 9.78 -39.52 -0.39 -1.25 16 20 C -0.11 -1.00 7.11 -26.51 -0.19 -1.19 16 21 C 0.05 0.46 8.01 38.05 0.30 0.76 16 22 O -0.31 -3.98 11.11 -20.61 -0.23 -4.21 16 23 H 0.02 0.43 6.91 -51.93 -0.36 0.07 16 24 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 27 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 28 H 0.02 0.43 6.91 -51.93 -0.36 0.07 16 29 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.07 1.46 7.75 -51.92 -0.40 1.06 16 31 H 0.07 1.46 7.76 -51.93 -0.40 1.06 16 32 H 0.14 2.08 5.88 -52.48 -0.31 1.77 16 33 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -27.75 315.38 -9.34 -37.09 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.39 Total: 0.81 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -1.93 Total: -26.53 kcal Atomic # 7 Polarization: -23.75 SS G_CDS: 0.52 Total: -23.23 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.23 Total: -4.21 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -2.04 Total: -4.19 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.75 -9.34 -37.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594904825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.258 kcal (2) G-P(sol) polarization free energy of solvation -27.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds