Wall clock time and date at job start Tue Mar 31 2020 00:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47274 * 2 1 4 4 C 1.50696 * 109.47008 * 239.99714 * 2 1 3 5 5 H 1.08002 * 120.00305 * 240.00012 * 4 2 1 6 6 C 1.37879 * 120.00023 * 60.00409 * 4 2 1 7 7 N 1.31509 * 119.99860 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00118 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47294 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47153 * 119.99863 * 8 6 4 11 11 H 1.48501 * 109.47031 * 239.99990 * 8 6 4 12 12 C 1.53001 * 109.46871 * 120.00406 * 2 1 3 13 13 S 1.81405 * 109.46910 * 299.99481 * 12 2 1 14 14 C 1.76201 * 102.99906 * 180.02562 * 13 12 2 15 15 C 1.38936 * 120.20341 * 0.02562 * 14 13 12 16 16 C 1.37864 * 120.26729 * 180.17991 * 15 14 13 17 17 C 1.39288 * 120.34798 * 359.97438 * 16 15 14 18 18 C 1.38963 * 118.99320 * 359.61488 * 17 16 15 19 19 C 1.37627 * 120.84955 * 0.59201 * 18 17 16 20 20 C 1.51665 * 106.99625 * 180.57430 * 18 17 16 21 21 C 1.54699 * 101.94983 * 15.72832 * 20 18 17 22 22 O 1.36271 * 129.77208 * 179.58875 * 17 16 15 23 23 H 1.08998 * 109.47032 * 300.00346 * 1 2 3 24 24 H 1.09004 * 109.46979 * 59.99661 * 1 2 3 25 25 H 1.08999 * 109.47520 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47103 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47080 * 299.99724 * 3 2 1 28 28 H 1.09001 * 109.47213 * 60.00348 * 3 2 1 29 29 H 0.97005 * 120.00170 * 180.02562 * 7 6 4 30 30 H 1.09010 * 109.47255 * 180.02562 * 12 2 1 31 31 H 1.08995 * 109.47945 * 59.99959 * 12 2 1 32 32 H 1.08005 * 119.86471 * 0.15106 * 15 14 13 33 33 H 1.08002 * 119.82484 * 179.97438 * 16 15 14 34 34 H 1.08008 * 120.01533 * 179.57273 * 19 18 17 35 35 H 1.09002 * 110.94285 * 257.55228 * 20 18 17 36 36 H 1.08997 * 110.93728 * 133.89868 * 20 18 17 37 37 H 1.09000 * 110.74876 * 92.91789 * 21 20 18 38 38 H 1.09003 * 110.74587 * 216.07540 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1473 -2.2865 -3.6038 10 1 1.1677 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8160 12 6 2.0399 -0.7214 1.2492 13 16 1.4353 0.1338 2.7304 14 6 2.1130 -0.8235 4.0452 15 6 2.8997 -1.9346 3.7674 16 6 3.4275 -2.6867 4.7952 17 6 3.1781 -2.3402 6.1210 18 6 2.3974 -1.2224 6.3895 19 6 1.8649 -0.4711 5.3667 20 6 2.3148 -1.0914 7.8983 21 6 3.4650 -2.0154 8.3634 22 8 3.5903 -2.9423 7.2718 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7082 1.1608 -3.4844 30 1 3.1300 -0.7210 1.2495 31 1 1.6766 -1.7490 1.2493 32 1 3.0980 -2.2103 2.7422 33 1 4.0377 -3.5492 4.5711 34 1 1.2543 0.3911 5.5908 35 1 1.3539 -1.4490 8.2684 36 1 2.4916 -0.0621 8.2101 37 1 4.3863 -1.4482 8.4960 38 1 3.1962 -2.5330 9.2843 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594904825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:54 Heat of formation + Delta-G solvation = -30.542870 kcal Electronic energy + Delta-G solvation = -18852.143598 eV Core-core repulsion = 15978.235027 eV Total energy + Delta-G solvation = -2873.908571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.96720 -38.37944 -37.89244 -33.74549 -33.49147 -31.18153 -30.30893 -27.97966 -27.58536 -27.16320 -24.50001 -23.38812 -22.68966 -20.89332 -18.44816 -18.29583 -17.90473 -17.45505 -16.97760 -16.60726 -15.79260 -15.15565 -15.10961 -14.96217 -14.63273 -14.34644 -14.08823 -14.00613 -13.67119 -13.33011 -13.24112 -12.91285 -12.73253 -12.62638 -12.40008 -12.26389 -12.03339 -11.96919 -11.95594 -11.45602 -11.37604 -11.21745 -10.47597 -10.41745 -10.09280 -9.76014 -8.09514 -8.01851 -6.19460 0.15623 0.26547 0.70367 1.42144 1.45793 1.54949 1.67071 2.30822 2.45974 2.59686 3.21561 3.45040 3.68979 3.89629 4.17517 4.18368 4.24015 4.24647 4.30169 4.50686 4.63782 4.71801 4.83860 4.89353 4.92129 4.96632 5.04394 5.09399 5.19016 5.21342 5.26346 5.30843 5.44303 5.48354 5.64530 5.66358 6.08772 6.16153 6.19041 6.40093 6.85546 7.48550 8.97461 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038742 B = 0.003700 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.551112 B = 7565.829568 C = 8079.363172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.074 3.926 3 C -0.123 4.123 4 C -0.524 4.524 5 H 0.052 0.948 6 C 0.025 3.975 7 N -0.903 5.903 8 Si 0.949 3.051 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.067 4.067 13 S -0.127 6.127 14 C -0.122 4.122 15 C -0.112 4.112 16 C -0.125 4.125 17 C 0.079 3.921 18 C -0.161 4.161 19 C -0.063 4.063 20 C -0.104 4.104 21 C 0.046 3.954 22 O -0.322 6.322 23 H 0.033 0.967 24 H 0.060 0.940 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.260 0.740 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.287 -3.436 20.035 20.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.072 3.928 3 C -0.181 4.181 4 C -0.564 4.564 5 H 0.070 0.930 6 C -0.175 4.175 7 N -0.542 5.542 8 Si 0.776 3.224 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.215 4.215 13 S 0.119 5.881 14 C -0.235 4.235 15 C -0.136 4.136 16 C -0.145 4.145 17 C 0.031 3.969 18 C -0.164 4.164 19 C -0.087 4.087 20 C -0.141 4.141 21 C -0.028 4.028 22 O -0.237 6.237 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.106 0.894 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.573 -2.519 19.888 20.211 hybrid contribution 0.994 -1.390 -1.322 2.160 sum 3.567 -3.908 18.566 19.305 Atomic orbital electron populations 1.21731 0.97484 0.98804 1.00105 1.17979 0.92896 0.92556 0.89340 1.21729 0.98100 0.98172 1.00104 1.21360 1.31714 1.12229 0.91106 0.92952 1.25540 0.95131 0.95578 1.01235 1.69953 1.37105 1.23549 1.23572 0.85642 0.78074 0.78733 0.79974 1.19446 1.20888 1.20858 1.23838 1.02383 1.01255 0.94032 1.85414 1.65646 1.39615 0.97433 1.21979 1.03648 1.00154 0.97685 1.21060 0.98082 0.94802 0.99612 1.20293 1.03260 1.02362 0.88593 1.19701 0.95791 0.93331 0.88076 1.21028 1.00599 0.97569 0.97157 1.19991 0.99803 0.99901 0.88960 1.21921 1.00879 1.03102 0.88230 1.24148 0.98893 0.90339 0.89415 1.86813 1.82852 1.38891 1.15177 0.94856 0.92069 0.95829 0.95804 0.92081 0.94845 0.93057 0.90884 0.90924 0.85133 0.84016 0.84250 0.87750 0.86918 0.89432 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.01 71.98 0.58 -5.31 16 2 C 0.07 3.52 0.52 -52.93 -0.03 3.49 16 3 C -0.12 -5.87 8.01 71.98 0.58 -5.29 16 4 C -0.52 -27.54 8.01 25.60 0.21 -27.33 16 5 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 6 C 0.02 1.32 5.15 84.66 0.44 1.75 16 7 N -0.90 -49.41 9.35 21.45 0.20 -49.21 16 8 Si 0.95 42.40 29.54 68.60 2.03 44.43 16 9 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C -0.07 -2.73 3.28 71.98 0.24 -2.49 16 13 S -0.13 -4.60 18.98 -56.49 -1.07 -5.68 16 14 C -0.12 -3.91 6.11 22.62 0.14 -3.77 16 15 C -0.11 -3.44 9.35 22.35 0.21 -3.23 16 16 C -0.12 -3.45 10.05 22.43 0.23 -3.22 16 17 C 0.08 2.07 7.04 22.70 0.16 2.23 16 18 C -0.16 -3.86 6.27 -19.53 -0.12 -3.98 16 19 C -0.06 -1.72 9.78 22.31 0.22 -1.50 16 20 C -0.10 -1.52 7.11 30.74 0.22 -1.30 16 21 C 0.05 0.63 8.01 72.56 0.58 1.21 16 22 O -0.32 -7.46 11.11 -96.65 -1.07 -8.53 16 23 H 0.03 1.45 6.91 -2.39 -0.02 1.44 16 24 H 0.06 3.22 6.07 -2.38 -0.01 3.21 16 25 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 28 H 0.03 1.46 6.91 -2.39 -0.02 1.44 16 29 H 0.26 13.63 8.31 -92.70 -0.77 12.86 16 30 H 0.07 2.93 7.75 -2.38 -0.02 2.91 16 31 H 0.07 2.92 7.76 -2.39 -0.02 2.90 16 32 H 0.13 4.05 5.88 -2.91 -0.02 4.03 16 33 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 34 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -59.33 315.38 4.76 -54.57 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.05 Total: 13.18 kcal Atomic # 6 Polarization: -52.40 SS G_CDS: 3.63 Total: -48.77 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.20 Total: -49.21 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -1.07 Total: -8.53 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -1.07 Total: -5.68 kcal Total: -59.33 4.76 -54.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594904825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.028 kcal (2) G-P(sol) polarization free energy of solvation -59.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds