Wall clock time and date at job start Tue Mar 31 2020 00:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47532 * 2 1 4 4 O 1.42901 * 109.46944 * 119.99896 * 2 1 3 5 5 C 1.52998 * 109.47229 * 239.99633 * 2 1 3 6 6 N 1.46508 * 115.54978 * 305.69391 * 5 2 1 7 7 S 1.65598 * 119.99984 * 263.06482 * 6 5 2 8 8 O 1.42106 * 106.40251 * 302.77157 * 7 6 5 9 9 O 1.42095 * 106.40459 * 169.84809 * 7 6 5 10 10 N 1.65603 * 107.21919 * 56.30748 * 7 6 5 11 11 C 1.46505 * 120.00170 * 267.91194 * 10 7 6 12 12 C 1.46497 * 119.99892 * 87.91281 * 10 7 6 13 13 C 1.50703 * 109.46996 * 95.00357 * 12 10 7 14 14 H 1.08004 * 119.99945 * 359.97438 * 13 12 10 15 15 C 1.37873 * 119.99834 * 179.97438 * 13 12 10 16 16 N 1.31521 * 119.99840 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00212 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47229 * 90.00264 * 17 15 13 19 19 H 1.48501 * 109.47282 * 209.99867 * 17 15 13 20 20 H 1.48503 * 109.47162 * 330.00288 * 17 15 13 21 21 C 1.53000 * 117.51945 * 91.39349 * 5 2 1 22 22 C 1.52996 * 117.50074 * 160.02442 * 5 2 1 23 23 H 1.08996 * 109.47619 * 185.10513 * 1 2 3 24 24 H 1.08999 * 109.46947 * 305.10727 * 1 2 3 25 25 H 1.09002 * 109.46610 * 65.09929 * 1 2 3 26 26 H 0.96700 * 114.00249 * 59.99474 * 4 2 1 27 27 H 0.96994 * 119.99936 * 83.06210 * 6 5 2 28 28 H 1.09000 * 109.47471 * 275.19130 * 11 10 7 29 29 H 1.09007 * 109.46643 * 35.18944 * 11 10 7 30 30 H 1.08996 * 109.46796 * 155.18301 * 11 10 7 31 31 H 1.08997 * 109.46832 * 214.99812 * 12 10 7 32 32 H 1.08994 * 109.47268 * 335.00172 * 12 10 7 33 33 H 0.97004 * 119.99679 * 180.02562 * 16 15 13 34 34 H 1.09001 * 117.49669 * 214.97455 * 21 5 2 35 35 H 1.08996 * 117.49649 * 359.97438 * 21 5 2 36 36 H 1.08997 * 117.50021 * 359.97438 * 22 5 2 37 37 H 1.08997 * 117.50305 * 144.99912 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 1.5235 -2.0774 -1.4509 7 16 2.4149 -3.3843 -0.9611 8 8 3.6668 -3.2884 -1.6267 9 8 1.5617 -4.5154 -1.0695 10 7 2.7274 -3.1873 0.6532 11 6 3.9569 -2.5176 1.0850 12 6 1.7745 -3.6826 1.6495 13 6 2.1922 -5.0574 2.1042 14 1 3.0787 -5.5163 1.6918 15 6 1.4428 -5.7291 3.0465 16 7 1.8071 -6.9291 3.4429 17 14 -0.0899 -4.9350 3.7602 18 1 -1.2669 -5.2955 2.9295 19 1 -0.2974 -5.4189 5.1488 20 1 0.0758 -3.4593 3.7698 21 6 2.3068 0.1256 -2.4951 22 6 3.4780 -0.4403 -1.6896 23 1 -0.3634 -1.0235 0.0914 24 1 -0.3633 0.5910 0.8407 25 1 -0.3632 0.4327 -0.9322 26 1 1.7209 -1.5952 1.2330 27 1 0.6595 -2.2098 -1.8713 28 1 4.7717 -3.2408 1.1192 29 1 4.2049 -1.7239 0.3802 30 1 3.8086 -2.0899 2.0764 31 1 1.7584 -3.0066 2.5044 32 1 0.7796 -3.7329 1.2072 33 1 1.2796 -7.4018 4.1056 34 1 2.0980 -0.3262 -3.4649 35 1 2.1185 1.1969 -2.4252 36 1 4.0606 0.2588 -1.0897 37 1 4.0398 -1.2643 -2.1295 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595362272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:16 Heat of formation + Delta-G solvation = -85.349651 kcal Electronic energy + Delta-G solvation = -22016.821266 eV Core-core repulsion = 18729.686832 eV Total energy + Delta-G solvation = -3287.134434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.30452 -36.79421 -36.28353 -35.36283 -35.13038 -32.42215 -32.05617 -30.39125 -28.43752 -25.18775 -23.96771 -22.61980 -22.05599 -20.71585 -18.81300 -17.56612 -17.28343 -16.97946 -16.50593 -15.82302 -15.38989 -15.00555 -14.54929 -14.27721 -13.83872 -13.61095 -13.13390 -12.71092 -12.52976 -12.43004 -12.18071 -11.93668 -11.81689 -11.74773 -11.44616 -11.39898 -11.23502 -11.20459 -10.94452 -10.66081 -10.56497 -10.47744 -10.27074 -9.96377 -9.57263 -9.25310 -8.62812 -8.22252 -6.11058 -4.11011 1.03125 3.21732 3.26308 3.28942 3.33539 3.41975 3.96797 4.32873 4.34821 4.52908 4.67890 4.79115 4.92101 5.11830 5.17389 5.19593 5.34404 5.48525 5.51343 5.65554 5.87181 5.91615 5.94643 6.13528 6.14164 6.17670 6.27388 6.45992 6.56294 6.87207 7.03955 7.31026 7.48736 7.81699 8.45141 8.94268 9.46898 11.02372 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.007771 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.703573 B = 3602.464092 C = 4113.271694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.130 3.870 3 H 0.107 0.893 4 O -0.566 6.566 5 C 0.059 3.941 6 N -1.104 6.104 7 S 2.782 3.218 8 O -0.986 6.986 9 O -0.961 6.961 10 N -0.989 5.989 11 C 0.110 3.890 12 C 0.217 3.783 13 C -0.530 4.530 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.892 5.892 17 Si 0.870 3.130 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.263 1.263 21 C -0.164 4.164 22 C -0.177 4.177 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.384 0.616 27 H 0.414 0.586 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.028 0.972 33 H 0.265 0.735 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.369 17.004 -8.632 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.069 3.931 3 H 0.124 0.876 4 O -0.378 6.378 5 C -0.033 4.033 6 N -0.861 5.861 7 S 2.789 3.211 8 O -0.970 6.970 9 O -0.945 6.945 10 N -0.834 5.834 11 C -0.036 4.036 12 C 0.094 3.906 13 C -0.569 4.569 14 H 0.098 0.902 15 C -0.129 4.129 16 N -0.530 5.530 17 Si 0.696 3.304 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.188 1.188 21 C -0.203 4.203 22 C -0.215 4.215 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.240 0.760 27 H 0.248 0.752 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.704 16.675 -8.831 18.882 hybrid contribution -1.738 -0.120 0.353 1.777 sum -2.442 16.555 -8.478 18.759 Atomic orbital electron populations 1.22436 0.96215 1.03030 1.02450 1.21640 0.93192 0.95540 0.82760 0.87569 1.86598 1.77172 1.31681 1.42398 1.21328 0.99557 0.85209 0.97162 1.55778 1.34990 1.18292 1.77041 1.02109 0.73485 0.72419 0.73046 1.93508 1.43404 1.86600 1.73448 1.93662 1.67985 1.46679 1.86129 1.57515 1.30019 1.71683 1.24147 1.21354 0.85416 0.95569 1.01270 1.19562 0.86991 0.96552 0.87517 1.21286 1.12927 0.99090 1.23560 0.90203 1.24877 0.97321 0.94676 0.96062 1.69894 1.39411 1.12351 1.31394 0.86959 0.84166 0.80233 0.79026 1.19845 1.20818 1.18808 1.23227 1.02563 0.99224 0.95285 1.23792 0.90196 1.04836 1.02637 0.92013 0.91655 0.91585 0.75979 0.75204 0.93243 0.92148 0.90580 0.94186 0.95409 0.92460 0.88087 0.88007 0.87361 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 9.31 37.16 0.35 -1.59 16 2 C 0.13 1.51 3.59 -26.73 -0.10 1.41 16 3 H 0.11 1.01 8.09 -51.93 -0.42 0.59 16 4 O -0.57 -8.37 10.93 -35.23 -0.39 -8.76 16 5 C 0.06 0.69 1.95 -131.82 -0.26 0.44 16 6 N -1.10 -15.25 5.47 0.54 0.00 -15.25 16 7 S 2.78 52.56 5.91 -107.50 -0.64 51.92 16 8 O -0.99 -19.52 14.62 -57.17 -0.84 -20.35 16 9 O -0.96 -22.19 17.18 -57.17 -0.98 -23.17 16 10 N -0.99 -19.34 1.72 -123.05 -0.21 -19.56 16 11 C 0.11 1.87 8.32 59.85 0.50 2.36 16 12 C 0.22 4.89 2.66 -5.19 -0.01 4.88 16 13 C -0.53 -14.85 9.94 -34.44 -0.34 -15.19 16 14 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 15 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 16 N -0.89 -27.24 13.96 55.43 0.77 -26.46 16 17 Si 0.87 20.68 27.47 -169.99 -4.67 16.01 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 21 C -0.16 -1.52 10.14 -26.73 -0.27 -1.80 16 22 C -0.18 -2.03 8.00 -26.73 -0.21 -2.25 16 23 H 0.06 0.72 7.95 -51.93 -0.41 0.31 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.38 6.21 3.64 45.56 0.17 6.38 16 27 H 0.41 4.86 8.96 -34.47 -0.31 4.55 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.89 6.17 -51.93 -0.32 0.57 16 30 H 0.08 1.23 7.50 -51.93 -0.39 0.84 16 31 H 0.04 0.86 6.35 -51.93 -0.33 0.53 16 32 H 0.03 0.62 7.10 -51.93 -0.37 0.25 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.13 1.78 5.95 -51.93 -0.31 1.47 16 LS Contribution 304.32 15.07 4.59 4.59 Total: -1.00 -33.83 304.32 -7.62 -41.45 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.82 Total: 9.29 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.45 Total: -9.71 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 0.56 Total: -61.26 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -2.20 Total: -52.28 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Atomic # 16 Polarization: 52.56 SS G_CDS: -0.64 Total: 51.92 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.83 -7.62 -41.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595362272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.901 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds