Wall clock time and date at job start Tue Mar 31 2020 00:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47532 * 2 1 4 4 O 1.42901 * 109.46944 * 119.99896 * 2 1 3 5 5 C 1.52998 * 109.47229 * 239.99633 * 2 1 3 6 6 N 1.46508 * 115.54978 * 305.69391 * 5 2 1 7 7 S 1.65598 * 119.99984 * 263.06482 * 6 5 2 8 8 O 1.42106 * 106.40251 * 302.77157 * 7 6 5 9 9 O 1.42095 * 106.40459 * 169.84809 * 7 6 5 10 10 N 1.65603 * 107.21919 * 56.30748 * 7 6 5 11 11 C 1.46505 * 120.00170 * 267.91194 * 10 7 6 12 12 C 1.46497 * 119.99892 * 87.91281 * 10 7 6 13 13 C 1.50703 * 109.46996 * 95.00357 * 12 10 7 14 14 H 1.08004 * 119.99945 * 359.97438 * 13 12 10 15 15 C 1.37873 * 119.99834 * 179.97438 * 13 12 10 16 16 N 1.31521 * 119.99840 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00212 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47229 * 90.00264 * 17 15 13 19 19 H 1.48501 * 109.47282 * 209.99867 * 17 15 13 20 20 H 1.48503 * 109.47162 * 330.00288 * 17 15 13 21 21 C 1.53000 * 117.51945 * 91.39349 * 5 2 1 22 22 C 1.52996 * 117.50074 * 160.02442 * 5 2 1 23 23 H 1.08996 * 109.47619 * 185.10513 * 1 2 3 24 24 H 1.08999 * 109.46947 * 305.10727 * 1 2 3 25 25 H 1.09002 * 109.46610 * 65.09929 * 1 2 3 26 26 H 0.96700 * 114.00249 * 59.99474 * 4 2 1 27 27 H 0.96994 * 119.99936 * 83.06210 * 6 5 2 28 28 H 1.09000 * 109.47471 * 275.19130 * 11 10 7 29 29 H 1.09007 * 109.46643 * 35.18944 * 11 10 7 30 30 H 1.08996 * 109.46796 * 155.18301 * 11 10 7 31 31 H 1.08997 * 109.46832 * 214.99812 * 12 10 7 32 32 H 1.08994 * 109.47268 * 335.00172 * 12 10 7 33 33 H 0.97004 * 119.99679 * 180.02562 * 16 15 13 34 34 H 1.09001 * 117.49669 * 214.97455 * 21 5 2 35 35 H 1.08996 * 117.49649 * 359.97438 * 21 5 2 36 36 H 1.08997 * 117.50021 * 359.97438 * 22 5 2 37 37 H 1.08997 * 117.50305 * 144.99912 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2492 6 7 1.5235 -2.0774 -1.4509 7 16 2.4149 -3.3843 -0.9611 8 8 3.6668 -3.2884 -1.6267 9 8 1.5617 -4.5154 -1.0695 10 7 2.7274 -3.1873 0.6532 11 6 3.9569 -2.5176 1.0850 12 6 1.7745 -3.6826 1.6495 13 6 2.1922 -5.0574 2.1042 14 1 3.0787 -5.5163 1.6918 15 6 1.4428 -5.7291 3.0465 16 7 1.8071 -6.9291 3.4429 17 14 -0.0899 -4.9350 3.7602 18 1 -1.2669 -5.2955 2.9295 19 1 -0.2974 -5.4189 5.1488 20 1 0.0758 -3.4593 3.7698 21 6 2.3068 0.1256 -2.4951 22 6 3.4780 -0.4403 -1.6896 23 1 -0.3634 -1.0235 0.0914 24 1 -0.3633 0.5910 0.8407 25 1 -0.3632 0.4327 -0.9322 26 1 1.7209 -1.5952 1.2330 27 1 0.6595 -2.2098 -1.8713 28 1 4.7717 -3.2408 1.1192 29 1 4.2049 -1.7239 0.3802 30 1 3.8086 -2.0899 2.0764 31 1 1.7584 -3.0066 2.5044 32 1 0.7796 -3.7329 1.2072 33 1 1.2796 -7.4018 4.1056 34 1 2.0980 -0.3262 -3.4649 35 1 2.1185 1.1969 -2.4252 36 1 4.0606 0.2588 -1.0897 37 1 4.0398 -1.2643 -2.1295 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595362272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:16 Heat of formation + Delta-G solvation = -113.657442 kcal Electronic energy + Delta-G solvation = -22018.048784 eV Core-core repulsion = 18729.686832 eV Total energy + Delta-G solvation = -3288.361952 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24874 -38.36627 -37.70475 -36.94864 -36.38319 -34.51855 -33.15751 -31.25079 -30.30289 -26.82814 -24.83928 -23.91261 -23.42221 -21.74870 -20.19836 -19.33366 -18.57139 -18.48271 -18.07847 -17.04826 -16.75216 -16.22228 -15.84632 -15.57865 -15.22038 -14.78208 -14.62137 -14.43005 -14.17182 -13.64038 -13.42260 -13.28312 -13.23190 -13.16024 -13.03536 -12.77664 -12.44179 -12.36301 -12.20682 -12.08632 -12.01869 -11.88472 -11.71981 -11.48784 -10.90049 -10.78877 -10.24922 -9.86392 -8.29167 -6.35585 -0.45003 1.36966 1.40343 1.48735 1.87669 2.34803 2.46489 2.65337 3.03829 3.38013 3.46697 3.63242 3.83800 3.87912 4.08912 4.19328 4.41632 4.52740 4.61946 4.77179 4.80327 4.83365 4.85140 5.03631 5.09178 5.10396 5.14258 5.27876 5.30435 5.36996 5.45044 5.63480 6.04930 6.29076 6.66516 6.73889 7.26979 8.88423 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.007771 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.703573 B = 3602.464092 C = 4113.271694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.125 3.875 3 H 0.135 0.865 4 O -0.581 6.581 5 C 0.038 3.962 6 N -1.086 6.086 7 S 2.794 3.206 8 O -1.001 7.001 9 O -1.011 7.011 10 N -0.993 5.993 11 C 0.107 3.893 12 C 0.226 3.774 13 C -0.542 4.542 14 H 0.028 0.972 15 C 0.007 3.993 16 N -0.948 5.948 17 Si 0.941 3.059 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.225 1.225 21 C -0.132 4.132 22 C -0.193 4.193 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.375 0.625 27 H 0.425 0.575 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.268 0.732 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.946 20.845 -9.012 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.064 3.936 3 H 0.152 0.848 4 O -0.392 6.392 5 C -0.052 4.052 6 N -0.848 5.848 7 S 2.802 3.198 8 O -0.984 6.984 9 O -0.995 6.995 10 N -0.836 5.836 11 C -0.038 4.038 12 C 0.102 3.898 13 C -0.581 4.581 14 H 0.047 0.953 15 C -0.191 4.191 16 N -0.588 5.588 17 Si 0.763 3.237 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.148 1.148 21 C -0.171 4.171 22 C -0.231 4.231 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.230 0.770 27 H 0.262 0.738 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.258 20.544 -9.234 22.637 hybrid contribution -1.133 -1.280 0.350 1.745 sum -3.392 19.264 -8.884 21.484 Atomic orbital electron populations 1.22444 0.95367 1.02362 1.03943 1.21957 0.94000 0.96279 0.81338 0.84798 1.86579 1.77623 1.31026 1.44019 1.21637 1.00098 0.84204 0.99274 1.55211 1.35104 1.18193 1.76331 1.01506 0.73048 0.72437 0.72787 1.93495 1.44360 1.87002 1.73544 1.93590 1.69074 1.50099 1.86719 1.57417 1.30486 1.71911 1.23806 1.21496 0.84034 0.95587 1.02682 1.19341 0.87767 0.93816 0.88869 1.21624 1.11324 1.01749 1.23375 0.95349 1.25953 1.01433 0.95176 0.96551 1.70077 1.41513 1.14534 1.32658 0.85823 0.78736 0.81314 0.77874 1.19347 1.20511 1.14777 1.23393 0.99096 1.00597 0.93975 1.23822 0.90355 1.04936 1.03963 0.93584 0.91200 0.89296 0.76995 0.73775 0.94912 0.89652 0.89456 0.91930 0.94497 0.92343 0.87771 0.84547 0.85555 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 9.31 71.98 0.67 -2.47 16 2 C 0.12 2.40 3.59 30.59 0.11 2.51 16 3 H 0.13 1.85 8.09 -2.39 -0.02 1.83 16 4 O -0.58 -15.39 10.93 -148.98 -1.63 -17.02 16 5 C 0.04 0.78 1.95 3.60 0.01 0.78 16 6 N -1.09 -28.06 5.47 -152.21 -0.83 -28.89 16 7 S 2.79 105.83 5.91 -56.49 -0.33 105.50 16 8 O -1.00 -40.00 14.62 -128.00 -1.87 -41.87 16 9 O -1.01 -47.86 17.18 -128.00 -2.20 -50.06 16 10 N -0.99 -38.70 1.72 -543.22 -0.93 -39.63 16 11 C 0.11 3.60 8.32 127.77 1.06 4.66 16 12 C 0.23 10.09 2.66 85.63 0.23 10.32 16 13 C -0.54 -31.31 9.94 25.60 0.25 -31.06 16 14 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 15 C 0.01 0.39 5.47 84.65 0.46 0.85 16 16 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 17 Si 0.94 42.12 27.47 68.60 1.88 44.01 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.23 -8.64 6.54 99.48 0.65 -7.99 16 21 C -0.13 -1.87 10.14 30.59 0.31 -1.55 16 22 C -0.19 -3.87 8.00 30.59 0.24 -3.63 16 23 H 0.04 0.93 7.95 -2.39 -0.02 0.91 16 24 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.38 11.22 3.64 -74.06 -0.27 10.95 16 27 H 0.43 9.16 8.96 -96.75 -0.87 8.29 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 2.41 6.17 -2.38 -0.01 2.40 16 30 H 0.09 2.72 7.50 -2.39 -0.02 2.71 16 31 H 0.06 2.54 6.35 -2.39 -0.02 2.52 16 32 H 0.04 1.60 7.10 -2.39 -0.02 1.58 16 33 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.10 2.68 5.95 -2.39 -0.01 2.66 16 Total: -1.00 -77.10 304.32 -2.37 -79.47 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -0.10 Total: 27.85 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 3.35 Total: -19.59 kcal Atomic # 7 Polarization: -126.81 SS G_CDS: -1.47 Total: -128.28 kcal Atomic # 8 Polarization: -103.25 SS G_CDS: -5.70 Total: -108.95 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.88 Total: 44.01 kcal Atomic # 16 Polarization: 105.83 SS G_CDS: -0.33 Total: 105.50 kcal Total: -77.10 -2.37 -79.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595362272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.189 kcal (2) G-P(sol) polarization free energy of solvation -77.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds